Wall clock time and date at job start Tue Mar 31 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46719 * 2 1 4 4 C 1.53007 * 109.49923 * 300.06372 * 3 2 1 5 5 C 1.53041 * 109.50074 * 180.02562 * 3 2 1 6 6 C 1.53040 * 109.52897 * 178.69315 * 5 3 2 7 7 C 1.53163 * 109.32945 * 61.37036 * 6 5 3 8 8 N 1.46925 * 108.76652 * 305.35352 * 7 6 5 9 9 C 1.34778 * 120.62909 * 233.63106 * 8 7 6 10 10 O 1.21598 * 119.99490 * 175.60481 * 9 8 7 11 11 C 1.47532 * 120.00054 * 355.60263 * 9 8 7 12 12 C 1.39664 * 120.19956 * 321.21407 * 11 9 8 13 13 C 1.37819 * 119.91969 * 180.02562 * 12 11 9 14 14 C 1.38571 * 120.32794 * 359.97438 * 13 12 11 15 15 C 1.38031 * 120.39674 * 0.02562 * 14 13 12 16 16 C 1.38836 * 120.07455 * 359.67977 * 15 14 13 17 17 O 1.35513 * 120.16147 * 180.29724 * 16 15 14 18 18 C 1.34813 * 117.00482 * 354.11198 * 17 16 15 19 19 H 1.08001 * 119.99346 * 355.47450 * 18 17 16 20 20 C 1.38689 * 120.00158 * 175.46860 * 18 17 16 21 21 N 1.31522 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46639 * 120.00522 * 22 20 18 25 25 H 1.48497 * 109.47332 * 240.00233 * 22 20 18 26 26 C 1.46930 * 118.73937 * 53.61351 * 8 7 6 27 27 H 1.09008 * 109.46651 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47222 * 299.99538 * 1 2 3 29 29 H 1.08997 * 109.47446 * 60.00397 * 1 2 3 30 30 H 1.08999 * 109.47222 * 240.00462 * 2 1 3 31 31 H 1.08997 * 109.47446 * 119.99603 * 2 1 3 32 32 H 1.09000 * 109.46852 * 299.93333 * 4 3 2 33 33 H 1.09004 * 109.46675 * 59.93439 * 4 3 2 34 34 H 1.08999 * 109.47295 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.45720 * 298.70659 * 5 3 2 36 36 H 1.08997 * 109.45864 * 58.67137 * 5 3 2 37 37 H 1.09000 * 109.49368 * 181.31335 * 6 5 3 38 38 H 1.08997 * 109.49570 * 301.40140 * 6 5 3 39 39 H 1.08999 * 109.58487 * 185.57387 * 7 6 5 40 40 H 1.08999 * 109.70902 * 65.21294 * 7 6 5 41 41 H 1.08003 * 120.03923 * 359.97438 * 12 11 9 42 42 H 1.08008 * 119.83736 * 179.97438 * 13 12 11 43 43 H 1.07991 * 119.80396 * 180.02562 * 14 13 12 44 44 H 1.08004 * 119.96321 * 179.97438 * 15 14 13 45 45 H 0.96998 * 120.00574 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.58452 * 186.60355 * 26 8 7 47 47 H 1.09001 * 109.70295 * 66.24294 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5289 2.1649 -1.2483 5 6 3.5703 1.4434 -0.0006 6 6 4.0810 2.8857 -0.0335 7 6 3.5979 3.6233 1.2189 8 7 2.1361 3.5029 1.3039 9 6 1.3627 4.6000 1.4260 10 8 0.1514 4.4941 1.4150 11 6 1.9858 5.9292 1.5730 12 6 3.1359 6.0839 2.3502 13 6 3.7129 7.3283 2.4840 14 6 3.1580 8.4286 1.8504 15 6 2.0216 8.2909 1.0790 16 6 1.4302 7.0440 0.9279 17 8 0.3180 6.9057 0.1662 18 6 -0.2360 8.0350 -0.3189 19 1 0.1638 8.9974 -0.0355 20 6 -1.3191 7.9608 -1.1820 21 7 -1.8062 6.7888 -1.5268 22 14 -2.0871 9.5256 -1.8536 23 1 -1.3600 10.7038 -1.3166 24 1 -1.9990 9.5234 -3.3360 25 1 -3.5124 9.5935 -1.4426 26 6 1.5333 2.1639 1.2530 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8923 1.6523 -2.1389 33 1 0.4388 2.1640 -1.2478 34 1 1.8920 3.1926 -1.2476 35 1 3.9341 0.9498 0.9006 36 1 3.9334 0.9094 -0.8787 37 1 5.1708 2.8852 -0.0575 38 1 3.6974 3.3873 -0.9220 39 1 3.8747 4.6755 1.1528 40 1 4.0533 3.1806 2.1047 41 1 3.5720 5.2295 2.8465 42 1 4.6020 7.4465 3.0857 43 1 3.6173 9.3997 1.9606 44 1 1.5948 9.1533 0.5886 45 1 -2.5639 6.7368 -2.1301 46 1 0.4479 2.2533 1.2094 47 1 1.8182 1.5987 2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173491039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:51 Heat of formation + Delta-G solvation = -39.673079 kcal Electronic energy + Delta-G solvation = -28046.854951 eV Core-core repulsion = 24388.214877 eV Total energy + Delta-G solvation = -3658.640074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.32814 -38.98946 -37.35764 -36.38885 -34.66727 -32.35227 -32.03648 -30.74660 -29.31101 -28.96491 -26.92691 -25.62484 -25.27062 -24.06167 -22.57947 -21.51994 -21.22892 -19.37724 -18.25499 -17.98275 -17.06990 -16.35820 -15.59732 -15.14090 -14.89375 -14.75567 -14.52844 -14.24726 -13.89511 -13.82138 -13.60136 -13.51919 -13.30065 -13.05643 -12.76801 -12.51269 -12.34426 -12.09972 -11.99429 -11.72518 -11.52805 -11.35546 -11.15842 -11.05603 -11.05095 -10.88804 -10.80458 -10.60266 -10.45224 -10.40967 -10.12699 -10.07818 -9.58127 -8.93940 -8.85982 -8.20558 -8.08313 -7.31938 -6.46334 -4.05317 1.78216 2.29479 3.11581 3.12231 3.18195 3.45922 3.68197 3.93182 4.52721 4.65952 4.83572 4.88503 5.08554 5.10791 5.14070 5.25721 5.29343 5.37654 5.42413 5.50382 5.53077 5.66217 5.68754 5.74108 5.82046 5.86486 5.94738 5.99009 5.99553 6.04242 6.08388 6.13838 6.15902 6.17879 6.30142 6.32058 6.38361 6.49197 6.56755 6.66777 6.76481 6.93362 7.03042 7.07882 7.25603 7.29193 7.68698 7.91181 8.03087 8.95136 9.02843 9.65621 10.68939 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.004986 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.776236 B = 5614.486566 C = 7285.593198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C -0.075 4.075 4 C -0.140 4.140 5 C -0.105 4.105 6 C -0.139 4.139 7 C 0.099 3.901 8 N -0.616 5.616 9 C 0.571 3.429 10 O -0.513 6.513 11 C -0.220 4.220 12 C -0.045 4.045 13 C -0.228 4.228 14 C -0.053 4.053 15 C -0.236 4.236 16 C 0.189 3.811 17 O -0.140 6.140 18 C -0.398 4.398 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.841 5.841 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.125 3.875 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 46 H 0.094 0.906 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.685 -8.759 3.243 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C -0.076 4.076 4 C -0.197 4.197 5 C -0.143 4.143 6 C -0.177 4.177 7 C -0.024 4.024 8 N -0.352 5.352 9 C 0.361 3.639 10 O -0.388 6.388 11 C -0.225 4.225 12 C -0.064 4.064 13 C -0.247 4.247 14 C -0.072 4.072 15 C -0.256 4.256 16 C 0.131 3.869 17 O -0.040 6.040 18 C -0.474 4.474 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.473 5.473 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.200 1.200 26 C 0.002 3.998 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.118 0.882 40 H 0.078 0.922 41 H 0.136 0.864 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 46 H 0.112 0.888 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.626 -9.100 2.995 14.307 hybrid contribution -0.186 0.837 -0.370 0.934 sum 10.440 -8.263 2.625 13.571 Atomic orbital electron populations 1.21904 0.95677 1.01165 1.02877 1.21499 0.96214 0.95266 1.01554 1.20929 0.95176 0.95067 0.96432 1.21887 1.01672 1.00626 0.95484 1.21555 0.94644 0.96578 1.01529 1.21994 1.00205 0.96174 0.99367 1.22041 0.80640 1.02630 0.97063 1.47894 1.06399 1.05832 1.75029 1.18211 0.86390 0.83527 0.75771 1.90819 1.13641 1.85786 1.48542 1.18772 1.01509 0.92160 1.10067 1.20886 0.92656 0.97127 0.95681 1.20477 1.03424 0.92981 1.07857 1.20889 0.94266 0.97729 0.94310 1.21153 0.99791 0.97826 1.06789 1.19232 0.86337 0.91797 0.89575 1.84062 1.31850 1.33873 1.54191 1.21470 1.13556 0.84434 1.27936 0.88849 1.25355 0.96141 0.98761 0.96065 1.70094 1.22680 1.23464 1.31042 0.85651 0.79165 0.79881 0.78746 1.18973 1.20069 1.19993 1.21568 1.00131 0.82285 0.95790 0.93168 0.92242 0.92041 0.92019 0.92223 0.93357 0.92063 0.91939 0.92163 0.92073 0.91230 0.90896 0.88173 0.92239 0.86355 0.87215 0.87199 0.85097 0.91930 0.88777 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.22 37.16 0.34 -1.53 16 2 C -0.11 -1.17 4.99 -26.73 -0.13 -1.31 16 3 C -0.08 -0.97 0.54 -154.38 -0.08 -1.06 16 4 C -0.14 -2.17 7.63 37.16 0.28 -1.88 16 5 C -0.11 -1.17 4.71 -26.69 -0.13 -1.29 16 6 C -0.14 -1.67 5.74 -26.63 -0.15 -1.82 16 7 C 0.10 1.35 4.86 -3.73 -0.02 1.33 16 8 N -0.62 -10.65 2.41 -174.01 -0.42 -11.07 16 9 C 0.57 12.80 7.17 -12.47 -0.09 12.71 16 10 O -0.51 -13.97 15.52 -10.89 -0.17 -14.13 16 11 C -0.22 -4.82 5.22 -104.81 -0.55 -5.37 16 12 C -0.04 -0.78 7.34 -39.20 -0.29 -1.07 16 13 C -0.23 -3.72 10.02 -39.61 -0.40 -4.11 16 14 C -0.05 -0.94 10.03 -39.53 -0.40 -1.33 16 15 C -0.24 -5.07 9.13 -39.44 -0.36 -5.43 16 16 C 0.19 4.69 6.62 -38.60 -0.26 4.43 16 17 O -0.14 -4.13 8.51 -15.34 -0.13 -4.26 16 18 C -0.40 -11.27 9.45 30.90 0.29 -10.97 16 19 H 0.09 2.42 5.28 -52.49 -0.28 2.14 16 20 C 0.04 1.22 5.49 -17.52 -0.10 1.12 16 21 N -0.84 -25.21 13.67 55.48 0.76 -24.45 16 22 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 26 C 0.12 1.93 4.60 -3.71 -0.02 1.91 16 27 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.06 0.76 6.57 -51.93 -0.34 0.41 16 29 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.05 6.43 -51.93 -0.33 0.72 16 34 H 0.06 1.14 5.97 -51.93 -0.31 0.83 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.02 6.33 -51.93 -0.33 0.69 16 39 H 0.10 1.44 4.53 -51.93 -0.24 1.21 16 40 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.12 1.70 6.35 -52.48 -0.33 1.37 16 42 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.13 2.79 5.71 -52.48 -0.30 2.49 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.09 1.71 5.61 -51.93 -0.29 1.42 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 360.64 15.07 5.43 5.43 Total: -1.00 -33.38 360.64 -8.46 -41.84 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -6.87 Total: 6.73 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.04 Total: -15.69 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.34 Total: -35.51 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.30 Total: -18.40 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.38 -8.46 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173491039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.171 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds