Wall clock time and date at job start Tue Mar 31 2020 12:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46719 * 2 1 4 4 C 1.53007 * 109.49923 * 300.06372 * 3 2 1 5 5 C 1.53041 * 109.50074 * 180.02562 * 3 2 1 6 6 C 1.53040 * 109.52897 * 178.69315 * 5 3 2 7 7 C 1.53163 * 109.32945 * 61.37036 * 6 5 3 8 8 N 1.46925 * 108.76652 * 305.35352 * 7 6 5 9 9 C 1.34778 * 120.62909 * 233.63106 * 8 7 6 10 10 O 1.21598 * 119.99490 * 175.60481 * 9 8 7 11 11 C 1.47532 * 120.00054 * 355.60263 * 9 8 7 12 12 C 1.39664 * 120.19956 * 321.21407 * 11 9 8 13 13 C 1.37819 * 119.91969 * 180.02562 * 12 11 9 14 14 C 1.38571 * 120.32794 * 359.97438 * 13 12 11 15 15 C 1.38031 * 120.39674 * 0.02562 * 14 13 12 16 16 C 1.38836 * 120.07455 * 359.67977 * 15 14 13 17 17 O 1.35513 * 120.16147 * 180.29724 * 16 15 14 18 18 C 1.34813 * 117.00482 * 354.11198 * 17 16 15 19 19 H 1.08001 * 119.99346 * 355.47450 * 18 17 16 20 20 C 1.38689 * 120.00158 * 175.46860 * 18 17 16 21 21 N 1.31522 * 120.00324 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47002 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46639 * 120.00522 * 22 20 18 25 25 H 1.48497 * 109.47332 * 240.00233 * 22 20 18 26 26 C 1.46930 * 118.73937 * 53.61351 * 8 7 6 27 27 H 1.09008 * 109.46651 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47222 * 299.99538 * 1 2 3 29 29 H 1.08997 * 109.47446 * 60.00397 * 1 2 3 30 30 H 1.08999 * 109.47222 * 240.00462 * 2 1 3 31 31 H 1.08997 * 109.47446 * 119.99603 * 2 1 3 32 32 H 1.09000 * 109.46852 * 299.93333 * 4 3 2 33 33 H 1.09004 * 109.46675 * 59.93439 * 4 3 2 34 34 H 1.08999 * 109.47295 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.45720 * 298.70659 * 5 3 2 36 36 H 1.08997 * 109.45864 * 58.67137 * 5 3 2 37 37 H 1.09000 * 109.49368 * 181.31335 * 6 5 3 38 38 H 1.08997 * 109.49570 * 301.40140 * 6 5 3 39 39 H 1.08999 * 109.58487 * 185.57387 * 7 6 5 40 40 H 1.08999 * 109.70902 * 65.21294 * 7 6 5 41 41 H 1.08003 * 120.03923 * 359.97438 * 12 11 9 42 42 H 1.08008 * 119.83736 * 179.97438 * 13 12 11 43 43 H 1.07991 * 119.80396 * 180.02562 * 14 13 12 44 44 H 1.08004 * 119.96321 * 179.97438 * 15 14 13 45 45 H 0.96998 * 120.00574 * 179.97438 * 21 20 18 46 46 H 1.08996 * 109.58452 * 186.60355 * 26 8 7 47 47 H 1.09001 * 109.70295 * 66.24294 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5289 2.1649 -1.2483 5 6 3.5703 1.4434 -0.0006 6 6 4.0810 2.8857 -0.0335 7 6 3.5979 3.6233 1.2189 8 7 2.1361 3.5029 1.3039 9 6 1.3627 4.6000 1.4260 10 8 0.1514 4.4941 1.4150 11 6 1.9858 5.9292 1.5730 12 6 3.1359 6.0839 2.3502 13 6 3.7129 7.3283 2.4840 14 6 3.1580 8.4286 1.8504 15 6 2.0216 8.2909 1.0790 16 6 1.4302 7.0440 0.9279 17 8 0.3180 6.9057 0.1662 18 6 -0.2360 8.0350 -0.3189 19 1 0.1638 8.9974 -0.0355 20 6 -1.3191 7.9608 -1.1820 21 7 -1.8062 6.7888 -1.5268 22 14 -2.0871 9.5256 -1.8536 23 1 -1.3600 10.7038 -1.3166 24 1 -1.9990 9.5234 -3.3360 25 1 -3.5124 9.5935 -1.4426 26 6 1.5333 2.1639 1.2530 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.8923 1.6523 -2.1389 33 1 0.4388 2.1640 -1.2478 34 1 1.8920 3.1926 -1.2476 35 1 3.9341 0.9498 0.9006 36 1 3.9334 0.9094 -0.8787 37 1 5.1708 2.8852 -0.0575 38 1 3.6974 3.3873 -0.9220 39 1 3.8747 4.6755 1.1528 40 1 4.0533 3.1806 2.1047 41 1 3.5720 5.2295 2.8465 42 1 4.6020 7.4465 3.0857 43 1 3.6173 9.3997 1.9606 44 1 1.5948 9.1533 0.5886 45 1 -2.5639 6.7368 -2.1301 46 1 0.4479 2.2533 1.2094 47 1 1.8182 1.5987 2.1403 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173491039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:49 Heat of formation + Delta-G solvation = -60.251488 kcal Electronic energy + Delta-G solvation = -28047.747297 eV Core-core repulsion = 24388.214877 eV Total energy + Delta-G solvation = -3659.532421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77541 -40.54355 -38.95615 -38.09315 -35.95773 -34.35554 -33.22476 -32.23140 -30.63338 -30.44430 -28.22308 -27.43704 -26.76139 -25.14113 -24.06460 -23.15623 -22.32099 -20.86243 -19.93823 -19.32634 -18.69354 -18.00890 -17.10415 -16.53341 -16.41623 -16.22347 -15.81665 -15.75787 -15.49243 -15.28382 -15.14584 -14.77044 -14.59584 -14.36417 -14.27541 -13.97211 -13.75988 -13.56771 -13.25210 -13.14873 -12.97262 -12.77189 -12.59725 -12.51475 -12.37625 -12.23211 -12.12139 -11.97968 -11.76970 -11.49604 -11.44874 -11.24140 -11.13387 -10.86010 -10.61609 -9.77232 -9.48006 -9.04663 -8.48908 -6.18763 0.19180 0.69611 1.29819 1.40459 1.49883 1.89409 2.13198 2.19304 2.81896 3.16202 3.41941 3.56389 3.77641 3.82646 3.90519 4.06275 4.13637 4.24014 4.25720 4.29173 4.37484 4.47281 4.53872 4.60217 4.60810 4.71251 4.73741 4.77953 4.81392 4.90971 4.95790 5.01612 5.02724 5.05859 5.09224 5.12805 5.18009 5.20381 5.29074 5.35713 5.43818 5.49108 5.56417 5.59797 5.68815 5.76322 5.93936 6.16052 6.50934 6.92106 7.38091 7.76361 8.73096 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012125 B = 0.004986 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2308.776236 B = 5614.486566 C = 7285.593198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.099 4.099 3 C -0.069 4.069 4 C -0.134 4.134 5 C -0.099 4.099 6 C -0.138 4.138 7 C 0.090 3.910 8 N -0.605 5.605 9 C 0.558 3.442 10 O -0.584 6.584 11 C -0.236 4.236 12 C -0.036 4.036 13 C -0.195 4.195 14 C -0.043 4.043 15 C -0.254 4.254 16 C 0.146 3.854 17 O -0.206 6.206 18 C -0.420 4.420 19 H 0.106 0.894 20 C -0.024 4.024 21 N -0.912 5.912 22 Si 1.023 2.977 23 H -0.245 1.245 24 H -0.266 1.266 25 H -0.271 1.271 26 C 0.120 3.880 27 H 0.071 0.929 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.025 0.975 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.159 0.841 42 H 0.167 0.833 43 H 0.155 0.845 44 H 0.122 0.878 45 H 0.270 0.730 46 H 0.052 0.948 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.946 -9.220 5.407 20.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.137 4.137 3 C -0.070 4.070 4 C -0.191 4.191 5 C -0.136 4.136 6 C -0.175 4.175 7 C -0.031 4.031 8 N -0.338 5.338 9 C 0.349 3.651 10 O -0.464 6.464 11 C -0.241 4.241 12 C -0.054 4.054 13 C -0.213 4.213 14 C -0.061 4.061 15 C -0.273 4.273 16 C 0.092 3.908 17 O -0.110 6.110 18 C -0.496 4.496 19 H 0.123 0.877 20 C -0.222 4.222 21 N -0.549 5.549 22 Si 0.841 3.159 23 H -0.168 1.168 24 H -0.191 1.191 25 H -0.196 1.196 26 C -0.003 4.003 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.177 0.823 42 H 0.184 0.816 43 H 0.172 0.828 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.012 -9.577 5.201 19.369 hybrid contribution -1.447 0.896 -0.792 1.877 sum 14.565 -8.681 4.409 17.519 Atomic orbital electron populations 1.21908 0.97186 1.01819 1.00906 1.21485 0.94812 0.93737 1.03676 1.20933 0.97300 0.95633 0.93133 1.21832 0.99502 0.99299 0.98515 1.21562 0.91954 0.96241 1.03887 1.22000 1.02236 0.96311 0.97001 1.22413 0.77860 1.02989 0.99841 1.47973 1.08041 1.05177 1.72650 1.18580 0.85936 0.85168 0.75407 1.90780 1.16693 1.86874 1.52047 1.19200 1.03005 0.91334 1.10555 1.21362 0.90583 0.99488 0.93946 1.21185 1.03574 0.91355 1.05185 1.21418 0.92197 1.00489 0.92046 1.21294 1.01538 0.96239 1.08248 1.20001 0.86422 0.94322 0.90034 1.84054 1.34901 1.34588 1.57454 1.21992 1.14316 0.85052 1.28223 0.87669 1.26744 0.96490 1.02773 0.96230 1.70287 1.24353 1.26619 1.33619 0.84493 0.77960 0.75322 0.78118 1.16789 1.19118 1.19607 1.21747 0.98020 0.81913 0.98579 0.91024 0.94074 0.94404 0.90198 0.89546 0.91254 0.95458 0.95570 0.89170 0.90232 0.87575 0.94121 0.89058 0.87933 0.82325 0.81594 0.82772 0.86018 0.92063 0.92987 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.22 71.98 0.66 -3.25 16 2 C -0.10 -1.96 4.99 30.59 0.15 -1.81 16 3 C -0.07 -1.73 0.54 -52.10 -0.03 -1.76 16 4 C -0.13 -4.49 7.63 71.98 0.55 -3.94 16 5 C -0.10 -1.79 4.71 30.62 0.14 -1.65 16 6 C -0.14 -2.87 5.74 30.66 0.18 -2.69 16 7 C 0.09 2.16 4.86 86.35 0.42 2.58 16 8 N -0.61 -21.11 2.41 -822.70 -1.98 -23.09 16 9 C 0.56 26.69 7.17 86.69 0.62 27.31 16 10 O -0.58 -35.32 15.52 11.43 0.18 -35.14 16 11 C -0.24 -10.62 5.22 -19.99 -0.10 -10.72 16 12 C -0.04 -1.12 7.34 22.52 0.17 -0.95 16 13 C -0.19 -5.23 10.02 22.25 0.22 -5.01 16 14 C -0.04 -1.36 10.03 22.30 0.22 -1.14 16 15 C -0.25 -11.04 9.13 22.36 0.20 -10.83 16 16 C 0.15 7.70 6.62 22.91 0.15 7.85 16 17 O -0.21 -13.39 8.51 -4.51 -0.04 -13.43 16 18 C -0.42 -25.87 9.45 67.93 0.64 -25.22 16 19 H 0.11 5.84 5.28 -2.91 -0.02 5.83 16 20 C -0.02 -1.45 5.49 84.85 0.47 -0.99 16 21 N -0.91 -60.43 13.67 21.62 0.30 -60.13 16 22 Si 1.02 45.08 29.55 68.60 2.03 47.11 16 23 H -0.24 -9.75 7.11 99.48 0.71 -9.05 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.12 3.73 4.60 86.36 0.40 4.13 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.04 1.13 6.57 -2.39 -0.02 1.12 16 29 H 0.04 1.07 6.43 -2.39 -0.02 1.06 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 1.06 6.43 -2.38 -0.02 1.04 16 34 H 0.03 1.03 5.97 -2.39 -0.01 1.02 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.04 1.12 6.33 -2.39 -0.02 1.11 16 39 H 0.09 2.35 4.53 -2.39 -0.01 2.34 16 40 H 0.10 1.68 8.10 -2.39 -0.02 1.66 16 41 H 0.16 3.68 6.35 -2.91 -0.02 3.66 16 42 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.15 3.53 8.06 -2.92 -0.02 3.51 16 44 H 0.12 5.39 5.71 -2.91 -0.02 5.37 16 45 H 0.27 16.39 8.31 -92.71 -0.77 15.62 16 46 H 0.05 2.08 5.61 -2.39 -0.01 2.07 16 47 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -89.51 360.64 6.52 -82.98 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.98 Total: 29.81 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 5.07 Total: -28.11 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -1.69 Total: -83.23 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: 0.14 Total: -48.56 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -89.51 6.52 -82.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173491039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.732 kcal (2) G-P(sol) polarization free energy of solvation -89.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds