Wall clock time and date at job start Tue Mar 31 2020 12:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 C 1.53007 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.49880 * 59.93106 * 4 3 2 6 6 C 1.53040 * 109.52169 * 299.85476 * 4 3 2 7 7 C 1.53040 * 109.53752 * 178.66761 * 6 4 3 8 8 C 1.52759 * 109.38242 * 61.23830 * 7 6 4 9 9 N 1.46931 * 109.00783 * 305.58762 * 8 7 6 10 10 S 1.65601 * 120.62964 * 233.58551 * 9 8 7 11 11 O 1.42096 * 104.27550 * 153.65152 * 10 9 8 12 12 O 1.42097 * 104.27967 * 25.78995 * 10 9 8 13 13 C 1.81399 * 104.44938 * 269.72039 * 10 9 8 14 14 C 1.53002 * 109.47162 * 180.02562 * 13 10 9 15 15 C 1.53006 * 109.46974 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99745 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00005 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46731 * 90.00468 * 20 18 16 22 22 H 1.48499 * 109.47078 * 209.99919 * 20 18 16 23 23 H 1.48491 * 109.47340 * 330.00301 * 20 18 16 24 24 C 1.46925 * 118.73652 * 53.31331 * 9 8 7 25 25 H 1.08992 * 109.47400 * 60.00040 * 1 2 3 26 26 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46822 * 300.00084 * 1 2 3 28 28 H 1.08997 * 109.47012 * 240.00258 * 2 1 3 29 29 H 1.08997 * 109.46975 * 119.99861 * 2 1 3 30 30 H 1.08997 * 109.47090 * 60.00306 * 3 2 1 31 31 H 1.08997 * 109.47206 * 299.99719 * 3 2 1 32 32 H 1.08995 * 109.47412 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46975 * 300.06815 * 5 4 3 34 34 H 1.09005 * 109.46733 * 60.06545 * 5 4 3 35 35 H 1.09009 * 109.45494 * 298.68660 * 6 4 3 36 36 H 1.08996 * 109.46395 * 58.65567 * 6 4 3 37 37 H 1.08999 * 109.49423 * 181.31004 * 7 6 4 38 38 H 1.08992 * 109.49625 * 301.37636 * 7 6 4 39 39 H 1.09000 * 109.51386 * 185.70601 * 8 7 6 40 40 H 1.09002 * 109.43465 * 65.42079 * 8 7 6 41 41 H 1.09004 * 109.47089 * 300.00001 * 13 10 9 42 42 H 1.09004 * 109.47568 * 60.00012 * 13 10 9 43 43 H 1.09000 * 109.46497 * 299.99702 * 14 13 10 44 44 H 1.08996 * 109.46876 * 60.00092 * 14 13 10 45 45 H 1.08993 * 109.46955 * 300.00073 * 15 14 13 46 46 H 1.09000 * 109.47050 * 59.99902 * 15 14 13 47 47 H 0.97001 * 119.99275 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.58718 * 66.43055 * 24 9 8 49 49 H 1.09005 * 109.58355 * 186.71424 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0802 0.7202 -1.2491 6 6 4.0820 0.7244 1.2500 7 6 5.6120 0.6950 1.2332 8 6 6.1466 2.1260 1.2439 9 7 5.5447 2.8701 0.1292 10 16 6.4978 3.6694 -0.9640 11 8 5.7140 3.7099 -2.1486 12 8 7.7346 2.9707 -0.9275 13 6 6.6864 5.3340 -0.2683 14 6 7.5576 6.1801 -1.1990 15 6 7.7161 7.5843 -0.6124 16 6 8.5747 8.4174 -1.5287 17 1 8.9684 7.9881 -2.4382 18 6 8.8586 9.7273 -1.2055 19 7 9.6084 10.4542 -2.0050 20 14 8.1783 10.4695 0.3680 21 1 9.1413 10.2478 1.4765 22 1 7.9697 11.9274 0.1777 23 1 6.8834 9.8234 0.7005 24 6 4.0813 2.8866 -0.0006 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.1702 0.7200 -1.2490 33 1 3.7161 -0.3073 -1.2486 34 1 3.7177 1.2337 -2.1397 35 1 3.7386 1.2538 2.1389 36 1 3.6995 -0.2962 1.2649 37 1 5.9753 0.1631 2.1124 38 1 5.9562 0.1869 0.3325 39 1 7.2306 2.1105 1.1299 40 1 5.8832 2.6045 2.1872 41 1 5.7056 5.7988 -0.1672 42 1 7.1594 5.2670 0.7115 43 1 8.5384 5.7154 -1.3004 44 1 7.0842 6.2471 -2.1784 45 1 6.7352 8.0486 -0.5112 46 1 8.1893 7.5176 0.3673 47 1 9.8078 11.3759 -1.7777 48 1 3.6460 3.4284 0.8390 49 1 3.8028 3.3751 -0.9345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174089903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:19 Heat of formation + Delta-G solvation = -106.414075 kcal Electronic energy + Delta-G solvation = -25881.145827 eV Core-core repulsion = 22355.055598 eV Total energy + Delta-G solvation = -3526.090229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.90195 -37.02450 -35.86438 -35.65253 -34.80445 -32.51569 -32.21136 -31.89724 -28.37197 -27.37470 -26.69796 -25.02695 -23.52856 -22.60313 -21.59026 -20.42291 -19.01974 -18.42408 -17.66285 -16.90308 -16.20282 -16.05227 -15.61252 -15.03874 -15.01283 -14.72421 -14.39569 -14.24398 -14.19895 -13.80977 -13.37824 -13.21164 -12.90764 -12.47168 -12.36282 -12.24931 -12.14317 -12.04240 -11.95169 -11.90322 -11.84148 -11.66595 -11.56870 -11.38945 -11.29373 -10.98389 -10.95196 -10.89090 -10.72644 -10.45428 -10.35841 -10.09847 -9.88001 -9.70093 -9.28302 -8.95397 -8.59189 -6.08869 -4.08127 0.37329 2.69518 3.26090 3.33650 3.35846 3.95614 4.19277 4.29528 4.39882 4.42654 4.51333 4.72325 4.73937 4.85485 4.95126 4.98715 5.03783 5.09929 5.11960 5.23817 5.24861 5.30967 5.41049 5.45484 5.52594 5.54926 5.56084 5.58436 5.67837 5.74443 5.75487 5.77953 5.82616 5.91815 5.95641 5.97611 6.07602 6.12937 6.18559 6.26404 6.29376 6.49409 6.66468 7.12022 7.26080 7.70587 8.47277 8.95513 9.52234 11.04421 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.002871 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.018432 B = 9751.948844 C =10056.485777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.071 4.071 5 C -0.146 4.146 6 C -0.107 4.107 7 C -0.135 4.135 8 C 0.117 3.883 9 N -1.002 6.002 10 S 2.598 3.402 11 O -0.956 6.956 12 O -0.958 6.958 13 C -0.616 4.616 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 C 0.126 3.874 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.020 0.980 46 H 0.015 0.985 47 H 0.264 0.736 48 H 0.067 0.933 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 -22.395 9.312 29.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.072 4.072 5 C -0.203 4.203 6 C -0.144 4.144 7 C -0.173 4.173 8 C -0.008 4.008 9 N -0.838 5.838 10 S 2.695 3.305 11 O -0.946 6.946 12 O -0.949 6.949 13 C -0.748 4.748 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 C 0.001 3.999 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.086 -22.594 8.490 29.006 hybrid contribution -0.417 1.058 1.394 1.799 sum -16.503 -21.536 9.884 28.877 Atomic orbital electron populations 1.21784 0.96097 1.01407 1.01768 1.21634 0.95496 0.97010 1.02278 1.21620 0.93653 0.97123 1.02316 1.20840 0.94913 0.95278 0.96199 1.21964 1.01502 0.99955 0.96843 1.21596 0.95215 1.00543 0.97087 1.21843 0.96128 0.96618 1.02754 1.21346 0.98608 0.91941 0.88923 1.57812 1.16014 1.65491 1.44521 1.05409 0.73638 0.77093 0.74356 1.93561 1.69738 1.87286 1.43997 1.93559 1.44273 1.70715 1.86308 1.30667 1.10194 1.21594 1.12316 1.21313 0.97530 0.97915 0.96936 1.19529 0.97289 0.90917 0.96550 1.21135 1.30869 0.96261 1.08217 0.90728 1.25030 0.94624 0.97035 0.96760 1.69917 1.37721 1.08875 1.37357 0.86770 0.80080 0.78376 0.84003 1.20221 1.21251 1.19063 1.21511 0.78872 0.96700 1.02831 0.92757 0.92988 0.92886 0.91645 0.91820 0.91801 0.91522 0.92413 0.92439 0.92145 0.91881 0.91498 0.90954 0.90988 0.88823 0.91584 0.85519 0.85526 0.91074 0.91026 0.96187 0.96637 0.92624 0.91513 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.13 -0.80 5.23 -26.73 -0.14 -0.94 16 3 C -0.11 -0.76 4.28 -26.73 -0.11 -0.87 16 4 C -0.07 -0.58 0.55 -154.39 -0.08 -0.67 16 5 C -0.15 -1.40 7.63 37.16 0.28 -1.12 16 6 C -0.11 -0.77 4.40 -26.69 -0.12 -0.89 16 7 C -0.13 -1.08 5.72 -26.83 -0.15 -1.23 16 8 C 0.12 1.08 6.40 -3.93 -0.03 1.06 16 9 N -1.00 -10.98 2.67 -113.77 -0.30 -11.28 16 10 S 2.60 37.88 5.45 -107.50 -0.59 37.29 16 11 O -0.96 -16.26 16.59 -57.54 -0.95 -17.21 16 12 O -0.96 -16.49 16.58 -57.54 -0.95 -17.45 16 13 C -0.62 -9.11 6.18 37.16 0.23 -8.88 16 14 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 15 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -15.09 9.66 -34.44 -0.33 -15.43 16 17 H 0.07 2.29 7.99 -52.48 -0.42 1.87 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 20 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 24 C 0.13 1.20 5.11 -3.71 -0.02 1.18 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 29 H 0.06 0.38 6.41 -51.93 -0.33 0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.64 5.97 -51.93 -0.31 0.33 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.07 0.43 6.37 -51.93 -0.33 0.10 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.66 6.33 -51.93 -0.33 0.33 16 39 H 0.09 0.93 6.85 -51.93 -0.36 0.58 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 42 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 46 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.98 6.86 -51.93 -0.36 0.63 16 LS Contribution 379.92 15.07 5.73 5.73 Total: -1.00 -34.11 379.92 -10.37 -44.48 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -8.95 Total: -2.64 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: -0.45 Total: -28.73 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.47 Total: -38.30 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -1.91 Total: -34.66 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 37.88 SS G_CDS: -0.59 Total: 37.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.11 -10.37 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174089903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.930 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds