Wall clock time and date at job start Tue Mar 31 2020 12:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 C 1.53007 * 109.46966 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.49880 * 59.93106 * 4 3 2 6 6 C 1.53040 * 109.52169 * 299.85476 * 4 3 2 7 7 C 1.53040 * 109.53752 * 178.66761 * 6 4 3 8 8 C 1.52759 * 109.38242 * 61.23830 * 7 6 4 9 9 N 1.46931 * 109.00783 * 305.58762 * 8 7 6 10 10 S 1.65601 * 120.62964 * 233.58551 * 9 8 7 11 11 O 1.42096 * 104.27550 * 153.65152 * 10 9 8 12 12 O 1.42097 * 104.27967 * 25.78995 * 10 9 8 13 13 C 1.81399 * 104.44938 * 269.72039 * 10 9 8 14 14 C 1.53002 * 109.47162 * 180.02562 * 13 10 9 15 15 C 1.53006 * 109.46974 * 179.97438 * 14 13 10 16 16 C 1.50699 * 109.46866 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99962 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99745 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00005 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46731 * 90.00468 * 20 18 16 22 22 H 1.48499 * 109.47078 * 209.99919 * 20 18 16 23 23 H 1.48491 * 109.47340 * 330.00301 * 20 18 16 24 24 C 1.46925 * 118.73652 * 53.31331 * 9 8 7 25 25 H 1.08992 * 109.47400 * 60.00040 * 1 2 3 26 26 H 1.09000 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46822 * 300.00084 * 1 2 3 28 28 H 1.08997 * 109.47012 * 240.00258 * 2 1 3 29 29 H 1.08997 * 109.46975 * 119.99861 * 2 1 3 30 30 H 1.08997 * 109.47090 * 60.00306 * 3 2 1 31 31 H 1.08997 * 109.47206 * 299.99719 * 3 2 1 32 32 H 1.08995 * 109.47412 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46975 * 300.06815 * 5 4 3 34 34 H 1.09005 * 109.46733 * 60.06545 * 5 4 3 35 35 H 1.09009 * 109.45494 * 298.68660 * 6 4 3 36 36 H 1.08996 * 109.46395 * 58.65567 * 6 4 3 37 37 H 1.08999 * 109.49423 * 181.31004 * 7 6 4 38 38 H 1.08992 * 109.49625 * 301.37636 * 7 6 4 39 39 H 1.09000 * 109.51386 * 185.70601 * 8 7 6 40 40 H 1.09002 * 109.43465 * 65.42079 * 8 7 6 41 41 H 1.09004 * 109.47089 * 300.00001 * 13 10 9 42 42 H 1.09004 * 109.47568 * 60.00012 * 13 10 9 43 43 H 1.09000 * 109.46497 * 299.99702 * 14 13 10 44 44 H 1.08996 * 109.46876 * 60.00092 * 14 13 10 45 45 H 1.08993 * 109.46955 * 300.00073 * 15 14 13 46 46 H 1.09000 * 109.47050 * 59.99902 * 15 14 13 47 47 H 0.97001 * 119.99275 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.58718 * 66.43055 * 24 9 8 49 49 H 1.09005 * 109.58355 * 186.71424 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0802 0.7202 -1.2491 6 6 4.0820 0.7244 1.2500 7 6 5.6120 0.6950 1.2332 8 6 6.1466 2.1260 1.2439 9 7 5.5447 2.8701 0.1292 10 16 6.4978 3.6694 -0.9640 11 8 5.7140 3.7099 -2.1486 12 8 7.7346 2.9707 -0.9275 13 6 6.6864 5.3340 -0.2683 14 6 7.5576 6.1801 -1.1990 15 6 7.7161 7.5843 -0.6124 16 6 8.5747 8.4174 -1.5287 17 1 8.9684 7.9881 -2.4382 18 6 8.8586 9.7273 -1.2055 19 7 9.6084 10.4542 -2.0050 20 14 8.1783 10.4695 0.3680 21 1 9.1413 10.2478 1.4765 22 1 7.9697 11.9274 0.1777 23 1 6.8834 9.8234 0.7005 24 6 4.0813 2.8866 -0.0006 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 5.1702 0.7200 -1.2490 33 1 3.7161 -0.3073 -1.2486 34 1 3.7177 1.2337 -2.1397 35 1 3.7386 1.2538 2.1389 36 1 3.6995 -0.2962 1.2649 37 1 5.9753 0.1631 2.1124 38 1 5.9562 0.1869 0.3325 39 1 7.2306 2.1105 1.1299 40 1 5.8832 2.6045 2.1872 41 1 5.7056 5.7988 -0.1672 42 1 7.1594 5.2670 0.7115 43 1 8.5384 5.7154 -1.3004 44 1 7.0842 6.2471 -2.1784 45 1 6.7352 8.0486 -0.5112 46 1 8.1893 7.5176 0.3673 47 1 9.8078 11.3759 -1.7777 48 1 3.6460 3.4284 0.8390 49 1 3.8028 3.3751 -0.9345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174089903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:17 Heat of formation + Delta-G solvation = -128.273671 kcal Electronic energy + Delta-G solvation = -25882.093730 eV Core-core repulsion = 22355.055598 eV Total energy + Delta-G solvation = -3527.038133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.56856 -38.27653 -37.06453 -36.53914 -36.35711 -34.26707 -33.16804 -32.52687 -30.17124 -28.10279 -27.25662 -25.85124 -25.22962 -23.21910 -22.38377 -21.99949 -19.98536 -19.23381 -18.92356 -18.68897 -17.32634 -17.28990 -16.31563 -16.20817 -16.08207 -15.73797 -15.44226 -15.29844 -15.12685 -14.85552 -14.48635 -14.07570 -13.94396 -13.88155 -13.67964 -13.37191 -13.25323 -13.20554 -13.09479 -12.79574 -12.73416 -12.70977 -12.57387 -12.55996 -12.29690 -12.00406 -11.96906 -11.86549 -11.67487 -11.50385 -11.43763 -11.28526 -11.27665 -11.05117 -10.97324 -10.79159 -9.80175 -8.31497 -6.37808 -0.78619 1.35614 1.38464 1.50204 1.68462 2.35151 2.80680 3.03366 3.12653 3.53878 3.71484 3.78060 3.88225 3.90776 4.11167 4.19502 4.29153 4.30197 4.38414 4.41237 4.48952 4.56412 4.61706 4.70395 4.80190 4.81682 4.85498 4.90337 4.92555 4.94563 4.98903 5.01386 5.09796 5.13592 5.16593 5.25012 5.29239 5.30348 5.40592 5.41247 5.42610 5.50972 5.60368 5.60954 5.63230 5.73105 6.23210 6.70140 7.26833 8.85526 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022777 B = 0.002871 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.018432 B = 9751.948844 C =10056.485777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.069 4.069 5 C -0.146 4.146 6 C -0.102 4.102 7 C -0.135 4.135 8 C 0.108 3.892 9 N -0.993 5.993 10 S 2.610 3.390 11 O -0.987 6.987 12 O -0.991 6.991 13 C -0.610 4.610 14 C -0.104 4.104 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.028 0.972 18 C 0.000 4.000 19 N -0.952 5.952 20 Si 0.957 3.043 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.239 1.239 24 C 0.117 3.883 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.032 0.968 46 H 0.031 0.969 47 H 0.267 0.733 48 H 0.095 0.905 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.944 -23.146 13.093 32.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.071 4.071 5 C -0.204 4.204 6 C -0.140 4.140 7 C -0.174 4.174 8 C -0.016 4.016 9 N -0.831 5.831 10 S 2.708 3.292 11 O -0.977 6.977 12 O -0.981 6.981 13 C -0.741 4.741 14 C -0.143 4.143 15 C -0.043 4.043 16 C -0.583 4.583 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.592 5.592 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.210 1.210 23 H -0.162 1.162 24 C -0.008 4.008 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.100 0.900 40 H 0.114 0.886 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.076 0.924 48 H 0.113 0.887 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.514 -23.370 12.258 32.237 hybrid contribution 0.371 1.218 0.117 1.279 sum -18.143 -22.152 12.375 31.193 Atomic orbital electron populations 1.21778 0.95751 1.01695 1.01796 1.21618 0.95775 0.96535 1.02317 1.21589 0.92442 0.97651 1.02607 1.20853 0.95810 0.94398 0.95998 1.21976 1.00202 1.00919 0.97269 1.21588 0.94360 1.01188 0.96822 1.21869 0.96901 0.95787 1.02856 1.21623 0.98066 0.92762 0.89155 1.57494 1.16375 1.64847 1.44419 1.04730 0.73038 0.77063 0.74340 1.93518 1.70244 1.87714 1.46233 1.93514 1.46169 1.71503 1.86890 1.30575 1.10685 1.20659 1.12145 1.21180 0.98314 0.97078 0.97724 1.19499 0.96674 0.92027 0.96057 1.21547 1.31631 0.97365 1.07802 0.95317 1.26140 0.94875 0.97521 1.01145 1.70091 1.39610 1.09485 1.40030 0.85568 0.80564 0.77327 0.78654 1.18867 1.21024 1.16162 1.21777 0.77724 0.97865 1.03405 0.93242 0.92616 0.92350 0.92399 0.90976 0.90420 0.92331 0.94369 0.91143 0.93797 0.90198 0.90522 0.88871 0.92850 0.89981 0.88621 0.82948 0.82853 0.92118 0.92101 0.94924 0.95055 0.92386 0.88653 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.98 0.71 -0.76 16 2 C -0.13 -1.29 5.23 30.60 0.16 -1.13 16 3 C -0.10 -1.20 4.28 30.60 0.13 -1.07 16 4 C -0.07 -0.99 0.55 -52.10 -0.03 -1.02 16 5 C -0.15 -2.78 7.63 71.98 0.55 -2.23 16 6 C -0.10 -1.13 4.40 30.62 0.13 -0.99 16 7 C -0.14 -1.83 5.72 30.53 0.17 -1.66 16 8 C 0.11 1.72 6.40 86.22 0.55 2.27 16 9 N -0.99 -19.88 2.67 -513.85 -1.37 -21.25 16 10 S 2.61 75.01 5.45 -56.49 -0.31 74.70 16 11 O -0.99 -34.20 16.59 -127.65 -2.12 -36.32 16 12 O -0.99 -34.52 16.58 -127.65 -2.12 -36.64 16 13 C -0.61 -16.70 6.18 71.98 0.44 -16.25 16 14 C -0.10 -4.09 5.16 30.60 0.16 -3.93 16 15 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 16 C -0.55 -32.03 9.66 25.60 0.25 -31.79 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 18 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 19 N -0.95 -60.48 13.96 21.45 0.30 -60.18 16 20 Si 0.96 43.39 27.47 68.60 1.88 45.28 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 24 C 0.12 1.96 5.11 86.36 0.44 2.40 16 25 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 29 H 0.07 0.64 6.41 -2.39 -0.02 0.62 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 0.86 5.97 -2.39 -0.01 0.85 16 33 H 0.07 1.10 6.43 -2.39 -0.02 1.08 16 34 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.08 0.73 6.37 -2.39 -0.02 0.71 16 37 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.05 0.93 6.33 -2.39 -0.02 0.91 16 39 H 0.08 1.51 6.85 -2.39 -0.02 1.50 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.15 3.39 8.14 -2.39 -0.02 3.37 16 43 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 46 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 47 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 48 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.08 1.59 6.86 -2.38 -0.02 1.58 16 Total: -1.00 -76.84 379.92 1.37 -75.46 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.84 Total: 14.73 kcal Atomic # 6 Polarization: -60.04 SS G_CDS: 4.26 Total: -55.78 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.07 Total: -81.43 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -4.23 Total: -72.95 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.88 Total: 45.28 kcal Atomic # 16 Polarization: 75.01 SS G_CDS: -0.31 Total: 74.70 kcal Total: -76.84 1.37 -75.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174089903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.812 kcal (2) G-P(sol) polarization free energy of solvation -76.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds