Wall clock time and date at job start Tue Mar 31 2020 12:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.50077 * 299.93574 * 4 3 2 6 6 C 1.53039 * 109.49813 * 60.00106 * 4 3 2 7 7 C 1.53051 * 109.53801 * 181.31510 * 6 4 3 8 8 C 1.53190 * 109.31113 * 298.63368 * 7 6 4 9 9 N 1.46923 * 108.77426 * 54.63581 * 8 7 6 10 10 S 1.65604 * 120.62822 * 126.36782 * 9 8 7 11 11 O 1.42096 * 104.27908 * 333.92398 * 10 9 8 12 12 O 1.42102 * 104.27417 * 206.06795 * 10 9 8 13 13 C 1.81397 * 104.45076 * 90.00109 * 10 9 8 14 14 C 1.52995 * 109.47426 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47600 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47460 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.46927 * 118.74387 * 306.63885 * 9 8 7 25 25 H 1.08999 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46872 * 300.00066 * 1 2 3 27 27 H 1.09000 * 109.47052 * 59.99870 * 1 2 3 28 28 H 1.08995 * 109.47203 * 240.00288 * 2 1 3 29 29 H 1.09000 * 109.47313 * 119.99648 * 2 1 3 30 30 H 1.09000 * 109.47361 * 60.00234 * 3 2 1 31 31 H 1.09000 * 109.47324 * 299.99963 * 3 2 1 32 32 H 1.09001 * 109.47301 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47010 * 300.06430 * 5 4 3 34 34 H 1.09002 * 109.46955 * 60.06590 * 5 4 3 35 35 H 1.09004 * 109.46325 * 61.29744 * 6 4 3 36 36 H 1.08997 * 109.46440 * 301.33571 * 6 4 3 37 37 H 1.08997 * 109.49247 * 178.68433 * 7 6 4 38 38 H 1.08995 * 109.49623 * 58.58638 * 7 6 4 39 39 H 1.09003 * 109.58889 * 294.85044 * 8 7 6 40 40 H 1.08994 * 109.70014 * 174.49350 * 8 7 6 41 41 H 1.09002 * 109.47683 * 59.99558 * 13 10 9 42 42 H 1.09006 * 109.46940 * 299.99605 * 13 10 9 43 43 H 1.09003 * 109.47604 * 59.99356 * 14 13 10 44 44 H 1.08999 * 109.47292 * 299.99721 * 14 13 10 45 45 H 1.09005 * 109.46800 * 60.00280 * 15 14 13 46 46 H 1.08998 * 109.47382 * 300.00079 * 15 14 13 47 47 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 48 48 H 1.08995 * 109.59192 * 173.14404 * 24 9 8 49 49 H 1.08998 * 109.58452 * 293.57439 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0812 0.7226 1.2488 6 6 4.0802 0.7214 -1.2503 7 6 5.6104 0.6921 -1.2355 8 6 6.1447 2.1277 -1.2536 9 7 5.5445 2.8698 -0.1366 10 16 6.4991 3.6717 0.9534 11 8 7.7357 2.9725 0.9173 12 8 5.7167 3.7155 2.1388 13 6 6.6872 5.3344 0.2532 14 6 7.5608 6.1823 1.1799 15 6 7.7200 7.5846 0.5891 16 6 8.5799 8.4199 1.5022 17 1 8.9732 7.9934 2.4132 18 6 8.8637 9.7289 1.1753 19 7 8.3844 10.2484 0.0662 20 14 9.9290 10.7646 2.3075 21 1 9.0685 11.4593 3.2984 22 1 10.8939 9.8875 3.0184 23 1 10.6718 11.7699 1.5058 24 6 4.0815 2.8820 -0.0015 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.1712 0.7233 1.2482 33 1 3.7175 1.2366 2.1387 34 1 3.7191 -0.3055 1.2495 35 1 3.7358 1.2487 -2.1400 36 1 3.6977 -0.2991 -1.2624 37 1 5.9725 0.1581 -2.1139 38 1 5.9558 0.1867 -0.3337 39 1 5.8765 2.6057 -2.1958 40 1 7.2292 2.1175 -1.1447 41 1 5.7065 5.7992 0.1520 42 1 7.1592 5.2647 -0.7269 43 1 8.5415 5.7174 1.2808 44 1 7.0894 6.2522 2.1602 45 1 6.7394 8.0497 0.4881 46 1 8.1916 7.5145 -0.3911 47 1 8.5838 11.1695 -0.1636 48 1 3.8049 3.3671 0.9346 49 1 3.6417 3.4226 -0.8395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174089911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:24 Heat of formation + Delta-G solvation = -110.603785 kcal Electronic energy + Delta-G solvation = -25817.507365 eV Core-core repulsion = 22291.235456 eV Total energy + Delta-G solvation = -3526.271909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.86451 -36.95674 -35.80465 -35.59426 -34.65740 -32.46652 -32.17819 -31.84339 -27.79960 -27.33154 -26.65700 -24.96582 -23.65195 -22.55995 -21.56814 -20.52694 -18.96416 -18.36526 -17.61066 -16.61747 -16.12712 -15.82347 -15.55494 -14.96492 -14.91758 -14.67724 -14.51180 -14.32501 -14.12257 -13.74362 -13.34027 -13.15824 -12.59511 -12.42890 -12.28583 -12.19677 -12.00274 -11.93302 -11.90979 -11.79315 -11.76017 -11.61967 -11.36042 -11.25284 -11.20280 -10.92213 -10.85498 -10.84001 -10.69035 -10.43350 -10.39849 -10.29913 -9.95130 -9.47741 -9.20850 -8.84512 -8.40893 -6.05804 -4.08842 0.45494 2.76433 3.30417 3.36428 3.40626 4.02471 4.25745 4.34735 4.42489 4.48084 4.55847 4.76830 4.78477 4.90155 5.01501 5.03609 5.10352 5.19953 5.23105 5.27960 5.30650 5.35851 5.45109 5.49181 5.57580 5.59826 5.60802 5.62952 5.71541 5.78365 5.81722 5.86002 5.90617 5.95554 5.99427 6.01841 6.11678 6.23218 6.25934 6.33308 6.45412 6.55958 6.87339 7.56868 7.66826 7.92260 8.32817 8.97378 9.55808 11.05440 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.002680 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.813256 B =10443.949160 C =10738.171501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.109 4.109 4 C -0.071 4.071 5 C -0.145 4.145 6 C -0.107 4.107 7 C -0.134 4.134 8 C 0.117 3.883 9 N -1.002 6.002 10 S 2.596 3.404 11 O -0.961 6.961 12 O -0.958 6.958 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.286 1.286 24 C 0.127 3.873 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.094 0.906 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.638 -21.645 -4.960 26.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.202 4.202 6 C -0.144 4.144 7 C -0.173 4.173 8 C -0.008 4.008 9 N -0.838 5.838 10 S 2.693 3.307 11 O -0.951 6.951 12 O -0.949 6.949 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.197 1.197 23 H -0.212 1.212 24 C 0.001 3.999 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.112 0.888 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.287 -21.870 -4.269 25.944 hybrid contribution 0.386 1.185 -0.082 1.249 sum -12.901 -20.685 -4.352 24.764 Atomic orbital electron populations 1.21784 0.96110 1.01380 1.01774 1.21632 0.95480 0.97035 1.02260 1.21617 0.93654 0.97092 1.02335 1.20767 0.94919 0.95399 0.96184 1.21967 1.01489 0.99929 0.96853 1.21596 0.95230 1.00488 0.97113 1.21915 0.96103 0.96598 1.02672 1.21427 0.98598 0.91860 0.88934 1.57797 1.16019 1.65602 1.44393 1.05474 0.73575 0.77221 0.74389 1.93549 1.44332 1.70873 1.86369 1.93551 1.69815 1.87383 1.44118 1.30607 1.10253 1.20917 1.12329 1.21497 0.96938 0.99243 0.96842 1.19060 0.97435 0.87954 0.96312 1.21256 1.31320 0.96619 1.07231 0.92374 1.25026 0.96114 0.97952 0.95323 1.69961 1.45257 1.14598 1.23632 0.86549 0.80542 0.80069 0.80625 1.20552 1.19735 1.21161 1.21419 0.78953 0.96673 1.02845 0.93012 0.92775 0.92863 0.91814 0.91678 0.91532 0.91772 0.92427 0.92175 0.92503 0.91854 0.91541 0.91013 0.91027 0.91525 0.88867 0.85526 0.85541 0.91665 0.91646 0.96139 0.96130 0.92899 0.88759 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.84 5.23 -26.73 -0.14 -0.98 16 3 C -0.11 -0.80 4.28 -26.73 -0.11 -0.91 16 4 C -0.07 -0.62 0.54 -154.61 -0.08 -0.70 16 5 C -0.15 -1.45 7.63 37.16 0.28 -1.17 16 6 C -0.11 -0.81 4.40 -26.68 -0.12 -0.93 16 7 C -0.13 -1.13 5.74 -26.61 -0.15 -1.29 16 8 C 0.12 1.15 6.43 -3.71 -0.02 1.13 16 9 N -1.00 -11.59 2.67 -113.77 -0.30 -11.89 16 10 S 2.60 39.43 5.45 -107.50 -0.59 38.85 16 11 O -0.96 -17.03 16.59 -57.54 -0.95 -17.99 16 12 O -0.96 -16.79 16.58 -57.54 -0.95 -17.75 16 13 C -0.61 -9.67 6.18 37.16 0.23 -9.44 16 14 C -0.11 -2.19 5.16 -26.73 -0.14 -2.33 16 15 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 16 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 C 0.13 1.28 5.07 -3.93 -0.02 1.26 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.40 6.40 -51.93 -0.33 0.07 16 29 H 0.06 0.45 6.44 -51.93 -0.33 0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.48 6.44 -51.93 -0.33 0.14 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.46 6.36 -51.93 -0.33 0.13 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.98 6.86 -51.93 -0.36 0.63 16 41 H 0.13 1.81 8.14 -51.92 -0.42 1.38 16 42 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.09 1.04 6.85 -51.93 -0.36 0.68 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -33.51 383.52 -10.75 -44.26 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.99 Total: -2.97 kcal Atomic # 6 Polarization: -28.52 SS G_CDS: -0.46 Total: -28.98 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.43 Total: -37.87 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -1.91 Total: -35.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 39.43 SS G_CDS: -0.59 Total: 38.85 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.51 -10.75 -44.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174089911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.344 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds