Wall clock time and date at job start Tue Mar 31 2020 12:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47000 * 2 1 4 4 C 1.52998 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.50077 * 299.93574 * 4 3 2 6 6 C 1.53039 * 109.49813 * 60.00106 * 4 3 2 7 7 C 1.53051 * 109.53801 * 181.31510 * 6 4 3 8 8 C 1.53190 * 109.31113 * 298.63368 * 7 6 4 9 9 N 1.46923 * 108.77426 * 54.63581 * 8 7 6 10 10 S 1.65604 * 120.62822 * 126.36782 * 9 8 7 11 11 O 1.42096 * 104.27908 * 333.92398 * 10 9 8 12 12 O 1.42102 * 104.27417 * 206.06795 * 10 9 8 13 13 C 1.81397 * 104.45076 * 90.00109 * 10 9 8 14 14 C 1.52995 * 109.47426 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47600 * 179.97438 * 14 13 10 16 16 C 1.50694 * 109.47460 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00179 * 359.97438 * 16 15 14 18 18 C 1.37879 * 120.00472 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99350 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00608 * 179.97438 * 18 16 15 21 21 H 1.48493 * 109.47326 * 270.00340 * 20 18 16 22 22 H 1.48506 * 109.46545 * 30.00090 * 20 18 16 23 23 H 1.48498 * 109.47210 * 149.99801 * 20 18 16 24 24 C 1.46927 * 118.74387 * 306.63885 * 9 8 7 25 25 H 1.08999 * 109.47185 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46872 * 300.00066 * 1 2 3 27 27 H 1.09000 * 109.47052 * 59.99870 * 1 2 3 28 28 H 1.08995 * 109.47203 * 240.00288 * 2 1 3 29 29 H 1.09000 * 109.47313 * 119.99648 * 2 1 3 30 30 H 1.09000 * 109.47361 * 60.00234 * 3 2 1 31 31 H 1.09000 * 109.47324 * 299.99963 * 3 2 1 32 32 H 1.09001 * 109.47301 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.47010 * 300.06430 * 5 4 3 34 34 H 1.09002 * 109.46955 * 60.06590 * 5 4 3 35 35 H 1.09004 * 109.46325 * 61.29744 * 6 4 3 36 36 H 1.08997 * 109.46440 * 301.33571 * 6 4 3 37 37 H 1.08997 * 109.49247 * 178.68433 * 7 6 4 38 38 H 1.08995 * 109.49623 * 58.58638 * 7 6 4 39 39 H 1.09003 * 109.58889 * 294.85044 * 8 7 6 40 40 H 1.08994 * 109.70014 * 174.49350 * 8 7 6 41 41 H 1.09002 * 109.47683 * 59.99558 * 13 10 9 42 42 H 1.09006 * 109.46940 * 299.99605 * 13 10 9 43 43 H 1.09003 * 109.47604 * 59.99356 * 14 13 10 44 44 H 1.08999 * 109.47292 * 299.99721 * 14 13 10 45 45 H 1.09005 * 109.46800 * 60.00280 * 15 14 13 46 46 H 1.08998 * 109.47382 * 300.00079 * 15 14 13 47 47 H 0.97005 * 119.99661 * 179.97438 * 19 18 16 48 48 H 1.08995 * 109.59192 * 173.14404 * 24 9 8 49 49 H 1.08998 * 109.58452 * 293.57439 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0812 0.7226 1.2488 6 6 4.0802 0.7214 -1.2503 7 6 5.6104 0.6921 -1.2355 8 6 6.1447 2.1277 -1.2536 9 7 5.5445 2.8698 -0.1366 10 16 6.4991 3.6717 0.9534 11 8 7.7357 2.9725 0.9173 12 8 5.7167 3.7155 2.1388 13 6 6.6872 5.3344 0.2532 14 6 7.5608 6.1823 1.1799 15 6 7.7200 7.5846 0.5891 16 6 8.5799 8.4199 1.5022 17 1 8.9732 7.9934 2.4132 18 6 8.8637 9.7289 1.1753 19 7 8.3844 10.2484 0.0662 20 14 9.9290 10.7646 2.3075 21 1 9.0685 11.4593 3.2984 22 1 10.8939 9.8875 3.0184 23 1 10.6718 11.7699 1.5058 24 6 4.0815 2.8820 -0.0015 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 5.1712 0.7233 1.2482 33 1 3.7175 1.2366 2.1387 34 1 3.7191 -0.3055 1.2495 35 1 3.7358 1.2487 -2.1400 36 1 3.6977 -0.2991 -1.2624 37 1 5.9725 0.1581 -2.1139 38 1 5.9558 0.1867 -0.3337 39 1 5.8765 2.6057 -2.1958 40 1 7.2292 2.1175 -1.1447 41 1 5.7065 5.7992 0.1520 42 1 7.1592 5.2647 -0.7269 43 1 8.5415 5.7174 1.2808 44 1 7.0894 6.2522 2.1602 45 1 6.7394 8.0497 0.4881 46 1 8.1916 7.5145 -0.3911 47 1 8.5838 11.1695 -0.1636 48 1 3.8049 3.3671 0.9346 49 1 3.6417 3.4226 -0.8395 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174089911.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:23 Heat of formation + Delta-G solvation = -130.837607 kcal Electronic energy + Delta-G solvation = -25818.384769 eV Core-core repulsion = 22291.235456 eV Total energy + Delta-G solvation = -3527.149313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.58371 -38.27756 -37.07127 -36.50479 -36.35409 -34.18585 -33.16514 -32.52574 -29.67482 -28.09615 -27.26097 -25.90144 -25.42832 -23.22458 -22.50134 -22.04052 -19.98621 -19.20046 -18.72579 -18.56194 -17.30117 -17.23046 -16.50752 -16.24207 -16.05356 -15.74874 -15.42554 -15.29917 -15.09972 -14.53557 -14.49184 -14.06721 -13.94074 -13.87859 -13.55374 -13.37457 -13.20595 -13.10117 -13.01548 -12.79670 -12.77382 -12.71967 -12.64437 -12.55983 -12.29971 -12.16481 -12.00545 -11.96601 -11.79043 -11.49478 -11.40245 -11.28110 -11.13884 -11.03942 -10.96607 -10.59559 -9.80812 -8.24569 -6.35883 -0.78610 1.38946 1.39908 1.51341 1.67663 2.38433 2.79049 3.08713 3.12250 3.55190 3.73040 3.78873 3.88160 3.90798 4.10872 4.19016 4.29031 4.35067 4.38553 4.41288 4.49419 4.60116 4.61064 4.70550 4.80152 4.85083 4.90101 4.91956 4.94338 4.97977 5.01596 5.02865 5.09986 5.13318 5.16568 5.25155 5.29513 5.40643 5.41356 5.42260 5.50855 5.59140 5.60974 5.63322 5.72485 5.76752 6.17272 6.79334 7.33454 8.86992 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.025948 B = 0.002680 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.813256 B =10443.949160 C =10738.171501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.105 4.105 4 C -0.069 4.069 5 C -0.146 4.146 6 C -0.103 4.103 7 C -0.134 4.134 8 C 0.107 3.893 9 N -0.993 5.993 10 S 2.617 3.383 11 O -0.988 6.988 12 O -0.984 6.984 13 C -0.610 4.610 14 C -0.106 4.106 15 C 0.032 3.968 16 C -0.554 4.554 17 H 0.059 0.941 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.964 3.036 21 H -0.271 1.271 22 H -0.265 1.265 23 H -0.279 1.279 24 C 0.117 3.883 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.044 0.956 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.055 0.945 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.265 0.735 48 H 0.081 0.919 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.430 -22.582 -5.881 27.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.143 4.143 4 C -0.070 4.070 5 C -0.203 4.203 6 C -0.140 4.140 7 C -0.172 4.172 8 C -0.017 4.017 9 N -0.832 5.832 10 S 2.715 3.285 11 O -0.978 6.978 12 O -0.975 6.975 13 C -0.740 4.740 14 C -0.145 4.145 15 C -0.006 4.006 16 C -0.592 4.592 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.196 1.196 22 H -0.189 1.189 23 H -0.204 1.204 24 C -0.008 4.008 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.074 0.926 48 H 0.099 0.901 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -14.074 -22.805 -5.183 27.295 hybrid contribution 0.584 1.423 0.166 1.548 sum -13.490 -21.381 -5.017 25.774 Atomic orbital electron populations 1.21778 0.95749 1.01720 1.01771 1.21614 0.95772 0.96418 1.02380 1.21589 0.92418 0.97750 1.02557 1.20775 0.95836 0.94291 0.96142 1.21977 1.00244 1.00952 0.97145 1.21593 0.94398 1.01217 0.96779 1.21936 0.96848 0.95518 1.02942 1.21711 0.98122 0.92851 0.89011 1.57498 1.16450 1.64803 1.44406 1.04575 0.73042 0.76658 0.74267 1.93509 1.46119 1.71279 1.86898 1.93514 1.70277 1.87625 1.46037 1.30576 1.10275 1.21102 1.12070 1.21310 0.98166 0.97383 0.97664 1.18954 0.95768 0.90536 0.95383 1.21728 1.31981 0.97605 1.07839 0.92235 1.25953 0.97426 0.99311 0.96913 1.70073 1.46425 1.15157 1.25271 0.85460 0.78800 0.78283 0.78625 1.19632 1.18936 1.20403 1.21686 0.77783 0.98069 1.03269 0.92535 0.93227 0.92439 0.90971 0.92247 0.92288 0.90615 0.94294 0.93702 0.91030 0.90416 0.90328 0.88873 0.92578 0.88981 0.89929 0.83907 0.83877 0.91762 0.91722 0.97885 0.97868 0.92571 0.90076 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.12 -1.37 5.23 30.59 0.16 -1.21 16 3 C -0.10 -1.32 4.28 30.59 0.13 -1.19 16 4 C -0.07 -1.07 0.54 -52.25 -0.03 -1.10 16 5 C -0.15 -2.84 7.63 71.98 0.55 -2.29 16 6 C -0.10 -1.25 4.40 30.62 0.13 -1.12 16 7 C -0.13 -1.96 5.74 30.68 0.18 -1.78 16 8 C 0.11 1.90 6.43 86.36 0.56 2.46 16 9 N -0.99 -21.79 2.67 -513.85 -1.37 -23.16 16 10 S 2.62 79.31 5.45 -56.49 -0.31 79.00 16 11 O -0.99 -35.26 16.59 -127.65 -2.12 -37.37 16 12 O -0.98 -34.93 16.58 -127.65 -2.12 -37.04 16 13 C -0.61 -19.15 6.18 71.98 0.44 -18.70 16 14 C -0.11 -4.46 5.16 30.59 0.16 -4.30 16 15 C 0.03 1.67 4.97 29.85 0.15 1.82 16 16 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 17 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 18 C 0.00 0.13 5.46 84.66 0.46 0.59 16 19 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 20 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 24 C 0.12 2.17 5.07 86.22 0.44 2.61 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.69 6.40 -2.39 -0.02 0.67 16 29 H 0.06 0.72 6.44 -2.39 -0.02 0.71 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.89 5.97 -2.39 -0.01 0.88 16 33 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 1.13 6.44 -2.39 -0.02 1.12 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.81 6.36 -2.39 -0.02 0.79 16 37 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 1.01 6.34 -2.39 -0.02 0.99 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.66 6.86 -2.39 -0.02 1.64 16 41 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 42 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 43 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 44 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 46 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 47 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 48 H 0.08 1.74 6.85 -2.39 -0.02 1.73 16 49 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -72.61 383.52 1.57 -71.05 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.89 Total: 13.56 kcal Atomic # 6 Polarization: -61.04 SS G_CDS: 4.27 Total: -56.77 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -1.09 Total: -78.96 kcal Atomic # 8 Polarization: -70.19 SS G_CDS: -4.23 Total: -74.42 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: 79.31 SS G_CDS: -0.31 Total: 79.00 kcal Total: -72.61 1.57 -71.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174089911.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.789 kcal (2) G-P(sol) polarization free energy of solvation -72.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds