Wall clock time and date at job start Tue Mar 31 2020 13:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.52996 * 109.46927 * 119.99771 * 2 1 3 5 5 C 1.53042 * 109.46092 * 60.00395 * 4 2 1 6 6 C 1.53192 * 109.31232 * 181.37102 * 5 4 2 7 7 N 1.46918 * 108.77433 * 305.36098 * 6 5 4 8 8 C 1.34781 * 120.62945 * 233.59047 * 7 6 5 9 9 O 1.21592 * 120.00219 * 356.11955 * 8 7 6 10 10 C 1.47540 * 119.99812 * 176.12660 * 8 7 6 11 11 C 1.39663 * 120.20004 * 53.69867 * 10 8 7 12 12 C 1.37830 * 119.91807 * 180.25367 * 11 10 8 13 13 C 1.38570 * 120.32463 * 359.72041 * 12 11 10 14 14 C 1.38020 * 120.40199 * 0.02562 * 13 12 11 15 15 C 1.38843 * 120.07317 * 359.97438 * 14 13 12 16 16 O 1.35519 * 120.16103 * 180.02562 * 15 14 13 17 17 C 1.34809 * 116.99988 * 5.92295 * 16 15 14 18 18 H 1.07994 * 120.00380 * 354.86062 * 17 16 15 19 19 C 1.38704 * 119.99709 * 174.58516 * 17 16 15 20 20 N 1.31520 * 120.00103 * 0.27732 * 19 17 16 21 21 Si 1.86802 * 119.99724 * 180.27433 * 19 17 16 22 22 H 1.48496 * 109.47574 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47025 * 120.00721 * 21 19 17 24 24 H 1.48505 * 109.46864 * 240.00064 * 21 19 17 25 25 C 1.46923 * 118.74359 * 53.86351 * 7 6 5 26 26 C 1.53038 * 109.44761 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47504 * 300.00357 * 1 2 3 28 28 H 1.09008 * 109.47280 * 60.00039 * 1 2 3 29 29 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46996 * 240.00068 * 2 1 3 31 31 H 1.08996 * 109.47211 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47384 * 299.99647 * 3 2 1 33 33 H 1.08998 * 109.47608 * 59.99926 * 3 2 1 34 34 H 1.09000 * 109.46371 * 300.02518 * 4 2 1 35 35 H 1.08997 * 109.49920 * 61.41589 * 5 4 2 36 36 H 1.09006 * 109.51850 * 301.33511 * 5 4 2 37 37 H 1.09004 * 109.58066 * 185.57426 * 6 5 4 38 38 H 1.08995 * 109.58773 * 65.15363 * 6 5 4 39 39 H 1.07999 * 120.04180 * 359.97438 * 11 10 8 40 40 H 1.08006 * 119.83614 * 179.74436 * 12 11 10 41 41 H 1.07999 * 119.79610 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.96635 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99770 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58840 * 65.91986 * 25 7 6 45 45 H 1.08999 * 109.59349 * 186.35423 * 25 7 6 46 46 H 1.09007 * 109.49799 * 298.57251 * 26 4 2 47 47 H 1.09002 * 109.49919 * 58.67044 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5297 -2.1641 1.2490 6 6 2.0138 -2.8728 2.5179 7 7 3.4755 -2.7498 2.5999 8 6 4.2494 -3.8433 2.7476 9 8 3.7365 -4.9371 2.8850 10 6 5.7191 -3.7130 2.7426 11 6 6.3482 -2.8203 3.6132 12 6 7.7211 -2.6994 3.6000 13 6 8.4824 -3.4640 2.7305 14 6 7.8750 -4.3541 1.8682 15 6 6.4931 -4.4892 1.8675 16 8 5.8948 -5.3630 1.0219 17 6 6.7021 -6.1599 0.2934 18 1 7.7731 -6.0279 0.3365 19 6 6.1574 -7.1529 -0.5073 20 7 4.8531 -7.3136 -0.5598 21 14 7.2763 -8.2620 -1.5109 22 1 8.6919 -7.8789 -1.2776 23 1 7.0719 -9.6742 -1.0995 24 1 6.9545 -8.1151 -2.9532 25 6 4.0772 -1.4116 2.5241 26 6 3.5703 -0.7203 1.2491 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6762 -0.2075 2.1391 35 1 1.9135 -2.6855 0.3721 36 1 0.4399 -2.1650 1.2249 37 1 1.7375 -3.9264 2.4759 38 1 1.5582 -2.4082 3.3923 39 1 5.7593 -2.2221 4.2928 40 1 8.2059 -2.0056 4.2709 41 1 9.5576 -3.3627 2.7277 42 1 8.4752 -4.9468 1.1938 43 1 4.4722 -8.0078 -1.1200 44 1 3.7866 -0.8300 3.3990 45 1 5.1629 -1.5006 2.4861 46 1 3.9344 -1.2558 0.3722 47 1 3.9336 0.3071 1.2253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174495254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:19 Heat of formation + Delta-G solvation = -48.963408 kcal Electronic energy + Delta-G solvation = -27488.106833 eV Core-core repulsion = 23829.063900 eV Total energy + Delta-G solvation = -3659.042933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.09257 -38.86676 -37.55964 -36.37675 -35.01381 -32.34981 -31.74285 -30.84528 -29.96482 -28.97101 -27.27833 -25.49228 -25.21750 -23.13361 -22.64844 -21.48796 -20.94181 -19.85534 -18.94644 -18.05384 -17.20630 -16.35918 -15.54559 -15.14369 -14.79347 -14.70307 -14.51891 -14.24375 -14.12765 -13.95303 -13.67818 -13.60646 -13.49983 -12.93175 -12.79548 -12.61715 -12.31196 -12.14933 -12.04790 -11.75592 -11.73409 -11.49959 -11.33221 -11.14033 -11.02808 -10.95406 -10.86759 -10.77649 -10.48138 -10.44679 -10.16335 -10.07697 -9.58891 -8.98357 -8.88256 -8.22310 -8.12925 -7.33074 -6.46536 -4.06722 1.82788 2.28199 3.10753 3.12705 3.18081 3.40720 3.62669 3.92866 4.47842 4.66292 4.71609 4.79078 5.01690 5.02282 5.15530 5.21689 5.29832 5.35132 5.44050 5.48548 5.53180 5.53613 5.54371 5.61206 5.72764 5.75044 5.83213 5.88231 5.91914 5.93379 5.99579 6.04986 6.12586 6.15743 6.20756 6.23199 6.31534 6.34149 6.55988 6.57612 6.65732 6.94067 7.01350 7.06135 7.24562 7.29361 7.67319 7.90707 7.99861 8.94286 8.97077 9.64141 10.69198 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.004307 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.639207 B = 6500.143018 C = 7663.148623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.079 4.079 5 C -0.131 4.131 6 C 0.116 3.884 7 N -0.615 5.615 8 C 0.577 3.423 9 O -0.520 6.520 10 C -0.214 4.214 11 C -0.045 4.045 12 C -0.224 4.224 13 C -0.056 4.056 14 C -0.234 4.234 15 C 0.188 3.812 16 O -0.150 6.150 17 C -0.399 4.399 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.844 5.844 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.104 3.896 26 C -0.132 4.132 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.069 0.931 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.177 15.856 3.046 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.097 4.097 5 C -0.170 4.170 6 C -0.007 4.007 7 N -0.351 5.351 8 C 0.366 3.634 9 O -0.395 6.395 10 C -0.218 4.218 11 C -0.064 4.064 12 C -0.243 4.243 13 C -0.074 4.074 14 C -0.253 4.253 15 C 0.130 3.870 16 O -0.051 6.051 17 C -0.475 4.475 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.477 5.477 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.020 4.020 26 C -0.170 4.170 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.088 0.912 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.894 15.001 2.926 15.772 hybrid contribution 0.649 -0.460 -0.552 0.968 sum -3.245 14.542 2.374 15.087 Atomic orbital electron populations 1.21892 0.95482 1.01907 1.01288 1.21147 0.95550 0.96010 0.98487 1.21888 1.01327 0.95999 1.01304 1.21167 0.95290 0.95562 0.97726 1.22041 1.00505 0.95399 0.99013 1.21455 0.80161 1.02414 0.96666 1.47970 1.06222 1.06477 1.74433 1.18215 0.86609 0.83267 0.75270 1.90783 1.74879 1.25906 1.47901 1.18741 0.92009 1.06141 1.04920 1.20723 0.94627 0.94987 0.96065 1.20476 0.93429 1.05663 1.04703 1.20879 0.98688 0.93981 0.93897 1.21138 0.94233 1.04875 1.05103 1.19172 0.90569 0.89028 0.88232 1.84001 1.34958 1.41388 1.44708 1.21452 0.90383 1.12452 1.23199 0.88790 1.25361 0.96551 0.96910 0.97485 1.70088 1.10219 1.31159 1.36209 0.85644 0.79315 0.79462 0.78974 1.18971 1.19997 1.20066 1.21971 1.00016 0.82937 0.97031 1.22128 0.95406 1.00615 0.98900 0.92907 0.93073 0.92264 0.91163 0.92280 0.93086 0.92898 0.91350 0.91193 0.90902 0.89074 0.92423 0.86688 0.87156 0.87155 0.85067 0.91912 0.92183 0.88489 0.91203 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 2 C -0.09 -0.94 2.51 -90.62 -0.23 -1.17 16 3 C -0.15 -1.29 8.84 37.16 0.33 -0.96 16 4 C -0.08 -0.88 1.74 -90.58 -0.16 -1.04 16 5 C -0.13 -1.74 5.04 -26.61 -0.13 -1.88 16 6 C 0.12 1.81 6.42 -3.72 -0.02 1.78 16 7 N -0.62 -10.87 2.97 -173.73 -0.52 -11.39 16 8 C 0.58 13.10 6.87 -12.47 -0.09 13.01 16 9 O -0.52 -14.22 16.16 1.35 0.02 -14.20 16 10 C -0.21 -4.69 4.92 -104.81 -0.52 -5.21 16 11 C -0.05 -0.79 7.41 -39.20 -0.29 -1.08 16 12 C -0.22 -3.65 10.02 -39.61 -0.40 -4.04 16 13 C -0.06 -0.98 10.03 -39.54 -0.40 -1.38 16 14 C -0.23 -5.02 9.16 -39.44 -0.36 -5.38 16 15 C 0.19 4.65 6.64 -38.59 -0.26 4.39 16 16 O -0.15 -4.43 8.94 -3.12 -0.03 -4.45 16 17 C -0.40 -11.30 9.49 30.90 0.29 -11.01 16 18 H 0.09 2.42 5.21 -52.49 -0.27 2.15 16 19 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 20 N -0.84 -25.45 13.67 55.48 0.76 -24.69 16 21 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 C 0.10 1.43 5.53 -3.48 -0.02 1.41 16 26 C -0.13 -1.63 5.06 -26.38 -0.13 -1.76 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.56 6.40 -51.93 -0.33 0.22 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.52 6.40 -51.93 -0.33 0.18 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.83 6.36 -51.93 -0.33 0.49 16 37 H 0.09 1.67 7.03 -51.93 -0.36 1.30 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.12 1.68 7.32 -52.49 -0.38 1.30 16 40 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.42 4.70 -51.93 -0.24 1.17 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -33.83 367.88 -8.48 -42.32 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.10 Total: 5.46 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.14 Total: -14.21 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.24 Total: -36.08 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.01 Total: -18.66 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.83 -8.48 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174495254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.648 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds