Wall clock time and date at job start Tue Mar 31 2020 13:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46985 * 2 1 4 4 C 1.52996 * 109.46927 * 119.99771 * 2 1 3 5 5 C 1.53042 * 109.46092 * 60.00395 * 4 2 1 6 6 C 1.53192 * 109.31232 * 181.37102 * 5 4 2 7 7 N 1.46918 * 108.77433 * 305.36098 * 6 5 4 8 8 C 1.34781 * 120.62945 * 233.59047 * 7 6 5 9 9 O 1.21592 * 120.00219 * 356.11955 * 8 7 6 10 10 C 1.47540 * 119.99812 * 176.12660 * 8 7 6 11 11 C 1.39663 * 120.20004 * 53.69867 * 10 8 7 12 12 C 1.37830 * 119.91807 * 180.25367 * 11 10 8 13 13 C 1.38570 * 120.32463 * 359.72041 * 12 11 10 14 14 C 1.38020 * 120.40199 * 0.02562 * 13 12 11 15 15 C 1.38843 * 120.07317 * 359.97438 * 14 13 12 16 16 O 1.35519 * 120.16103 * 180.02562 * 15 14 13 17 17 C 1.34809 * 116.99988 * 5.92295 * 16 15 14 18 18 H 1.07994 * 120.00380 * 354.86062 * 17 16 15 19 19 C 1.38704 * 119.99709 * 174.58516 * 17 16 15 20 20 N 1.31520 * 120.00103 * 0.27732 * 19 17 16 21 21 Si 1.86802 * 119.99724 * 180.27433 * 19 17 16 22 22 H 1.48496 * 109.47574 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47025 * 120.00721 * 21 19 17 24 24 H 1.48505 * 109.46864 * 240.00064 * 21 19 17 25 25 C 1.46923 * 118.74359 * 53.86351 * 7 6 5 26 26 C 1.53038 * 109.44761 * 180.02562 * 4 2 1 27 27 H 1.09001 * 109.47504 * 300.00357 * 1 2 3 28 28 H 1.09008 * 109.47280 * 60.00039 * 1 2 3 29 29 H 1.08999 * 109.47514 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46996 * 240.00068 * 2 1 3 31 31 H 1.08996 * 109.47211 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47384 * 299.99647 * 3 2 1 33 33 H 1.08998 * 109.47608 * 59.99926 * 3 2 1 34 34 H 1.09000 * 109.46371 * 300.02518 * 4 2 1 35 35 H 1.08997 * 109.49920 * 61.41589 * 5 4 2 36 36 H 1.09006 * 109.51850 * 301.33511 * 5 4 2 37 37 H 1.09004 * 109.58066 * 185.57426 * 6 5 4 38 38 H 1.08995 * 109.58773 * 65.15363 * 6 5 4 39 39 H 1.07999 * 120.04180 * 359.97438 * 11 10 8 40 40 H 1.08006 * 119.83614 * 179.74436 * 12 11 10 41 41 H 1.07999 * 119.79610 * 180.02562 * 13 12 11 42 42 H 1.08001 * 119.96635 * 180.02562 * 14 13 12 43 43 H 0.96997 * 119.99770 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58840 * 65.91986 * 25 7 6 45 45 H 1.08999 * 109.59349 * 186.35423 * 25 7 6 46 46 H 1.09007 * 109.49799 * 298.57251 * 26 4 2 47 47 H 1.09002 * 109.49919 * 58.67044 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.5297 -2.1641 1.2490 6 6 2.0138 -2.8728 2.5179 7 7 3.4755 -2.7498 2.5999 8 6 4.2494 -3.8433 2.7476 9 8 3.7365 -4.9371 2.8850 10 6 5.7191 -3.7130 2.7426 11 6 6.3482 -2.8203 3.6132 12 6 7.7211 -2.6994 3.6000 13 6 8.4824 -3.4640 2.7305 14 6 7.8750 -4.3541 1.8682 15 6 6.4931 -4.4892 1.8675 16 8 5.8948 -5.3630 1.0219 17 6 6.7021 -6.1599 0.2934 18 1 7.7731 -6.0279 0.3365 19 6 6.1574 -7.1529 -0.5073 20 7 4.8531 -7.3136 -0.5598 21 14 7.2763 -8.2620 -1.5109 22 1 8.6919 -7.8789 -1.2776 23 1 7.0719 -9.6742 -1.0995 24 1 6.9545 -8.1151 -2.9532 25 6 4.0772 -1.4116 2.5241 26 6 3.5703 -0.7203 1.2491 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6762 -0.2075 2.1391 35 1 1.9135 -2.6855 0.3721 36 1 0.4399 -2.1650 1.2249 37 1 1.7375 -3.9264 2.4759 38 1 1.5582 -2.4082 3.3923 39 1 5.7593 -2.2221 4.2928 40 1 8.2059 -2.0056 4.2709 41 1 9.5576 -3.3627 2.7277 42 1 8.4752 -4.9468 1.1938 43 1 4.4722 -8.0078 -1.1200 44 1 3.7866 -0.8300 3.3990 45 1 5.1629 -1.5006 2.4861 46 1 3.9344 -1.2558 0.3722 47 1 3.9336 0.3071 1.2253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174495254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:18 Heat of formation + Delta-G solvation = -70.306773 kcal Electronic energy + Delta-G solvation = -27489.032351 eV Core-core repulsion = 23829.063900 eV Total energy + Delta-G solvation = -3659.968451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.63129 -40.38156 -39.01300 -38.08528 -36.29083 -34.36219 -33.09142 -31.98332 -31.36016 -30.62641 -28.03667 -27.45071 -26.53250 -24.44010 -23.97376 -23.10709 -22.18771 -20.83457 -20.35012 -19.91980 -18.83427 -18.03238 -17.12266 -16.64633 -16.40566 -16.01632 -15.73512 -15.62712 -15.43819 -15.33304 -15.10946 -14.98615 -14.85025 -14.47289 -14.26092 -13.82688 -13.66096 -13.55237 -13.12286 -13.06120 -12.98845 -12.72399 -12.70142 -12.59336 -12.36180 -12.29035 -12.13166 -12.10241 -11.84489 -11.46135 -11.39170 -11.21936 -11.07283 -10.86801 -10.69410 -9.78480 -9.56743 -9.06245 -8.49739 -6.20368 0.24340 0.68660 1.30188 1.40746 1.50331 1.74973 2.12909 2.16147 2.79931 3.11091 3.42199 3.62786 3.72051 3.78014 3.90735 4.09605 4.13178 4.20809 4.26849 4.29761 4.38566 4.51253 4.53060 4.56023 4.58771 4.63023 4.81213 4.83004 4.85351 4.92490 4.96454 4.99609 5.05844 5.07421 5.08800 5.12022 5.13211 5.14689 5.34051 5.39996 5.49564 5.52139 5.58070 5.62063 5.68497 5.70465 5.93761 6.15153 6.44283 6.91826 7.28561 7.74285 8.72781 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.004307 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.639207 B = 6500.143018 C = 7663.148623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.125 4.125 6 C 0.110 3.890 7 N -0.607 5.607 8 C 0.563 3.437 9 O -0.589 6.589 10 C -0.229 4.229 11 C -0.038 4.038 12 C -0.189 4.189 13 C -0.046 4.046 14 C -0.249 4.249 15 C 0.144 3.856 16 O -0.216 6.216 17 C -0.420 4.420 18 H 0.108 0.892 19 C -0.024 4.024 20 N -0.916 5.916 21 Si 1.023 2.977 22 H -0.244 1.244 23 H -0.271 1.271 24 H -0.267 1.267 25 C 0.097 3.903 26 C -0.129 4.129 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.096 0.904 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.271 0.729 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.032 0.968 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 20.332 5.238 21.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.089 4.089 5 C -0.163 4.163 6 C -0.012 4.012 7 N -0.340 5.340 8 C 0.354 3.646 9 O -0.469 6.469 10 C -0.233 4.233 11 C -0.056 4.056 12 C -0.208 4.208 13 C -0.064 4.064 14 C -0.269 4.269 15 C 0.091 3.909 16 O -0.121 6.121 17 C -0.496 4.496 18 H 0.125 0.875 19 C -0.222 4.222 20 N -0.553 5.553 21 Si 0.841 3.159 22 H -0.167 1.167 23 H -0.196 1.196 24 H -0.192 1.192 25 C -0.025 4.025 26 C -0.167 4.167 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.046 0.954 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.172 0.828 40 H 0.184 0.816 41 H 0.173 0.827 42 H 0.141 0.859 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.108 0.892 46 H 0.051 0.949 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.844 19.597 5.151 20.346 hybrid contribution 0.090 -1.495 -0.958 1.778 sum -1.754 18.102 4.193 18.664 Atomic orbital electron populations 1.21878 0.94482 1.01648 1.02405 1.21116 0.96402 0.96824 0.96810 1.21855 1.01250 0.94618 1.02381 1.21153 0.94392 0.93830 0.99546 1.22000 1.01768 0.96568 0.95926 1.21639 0.79348 1.00816 0.99407 1.48093 1.06865 1.06959 1.72087 1.18622 0.87599 0.83514 0.74908 1.90737 1.76039 1.28669 1.51451 1.19125 0.91812 1.06906 1.05470 1.21201 0.95873 0.93683 0.94833 1.21174 0.92621 1.03965 1.02993 1.21406 1.01120 0.91897 0.92021 1.21287 0.92831 1.06318 1.06429 1.19909 0.92642 0.89254 0.89098 1.83990 1.36484 1.44030 1.47548 1.22002 0.91158 1.12949 1.23470 0.87462 1.26759 0.98238 0.98470 0.98774 1.70277 1.12938 1.33122 1.38956 0.84486 0.77746 0.76643 0.76981 1.16700 1.19610 1.19157 1.22337 0.99618 0.81012 0.99498 1.22122 0.96268 1.01665 0.96601 0.91319 0.92445 0.93234 0.93588 0.92347 0.92590 0.91290 0.88517 0.95359 0.88644 0.93181 0.88551 0.82792 0.81596 0.82695 0.85892 0.92004 0.87808 0.89152 0.94923 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.84 71.98 0.64 -1.74 16 2 C -0.09 -1.73 2.51 -10.80 -0.03 -1.76 16 3 C -0.14 -2.06 8.84 71.98 0.64 -1.42 16 4 C -0.07 -1.45 1.74 -10.77 -0.02 -1.47 16 5 C -0.12 -3.40 5.04 30.67 0.15 -3.24 16 6 C 0.11 3.53 6.42 86.36 0.55 4.09 16 7 N -0.61 -21.79 2.97 -821.81 -2.44 -24.23 16 8 C 0.56 27.08 6.87 86.70 0.60 27.68 16 9 O -0.59 -35.32 16.16 -0.24 0.00 -35.32 16 10 C -0.23 -10.25 4.92 -19.99 -0.10 -10.35 16 11 C -0.04 -1.19 7.41 22.52 0.17 -1.02 16 12 C -0.19 -5.07 10.02 22.25 0.22 -4.85 16 13 C -0.05 -1.44 10.03 22.30 0.22 -1.22 16 14 C -0.25 -10.72 9.16 22.36 0.20 -10.52 16 15 C 0.14 7.53 6.64 22.91 0.15 7.68 16 16 O -0.22 -13.92 8.94 -16.23 -0.15 -14.07 16 17 C -0.42 -25.67 9.49 67.93 0.64 -25.03 16 18 H 0.11 5.88 5.21 -2.91 -0.02 5.87 16 19 C -0.02 -1.47 5.49 84.85 0.47 -1.00 16 20 N -0.92 -60.51 13.67 21.62 0.30 -60.21 16 21 Si 1.02 44.79 29.55 68.60 2.03 46.82 16 22 H -0.24 -9.62 7.11 99.48 0.71 -8.91 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 25 C 0.10 2.42 5.53 86.51 0.48 2.90 16 26 C -0.13 -2.94 5.06 30.82 0.16 -2.79 16 27 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 0.88 6.40 -2.39 -0.02 0.87 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 0.84 6.40 -2.39 -0.02 0.82 16 32 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 2.15 6.36 -2.38 -0.02 2.14 16 37 H 0.05 2.02 7.03 -2.38 -0.02 2.01 16 38 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.15 3.67 7.32 -2.91 -0.02 3.64 16 40 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.12 5.36 5.64 -2.91 -0.02 5.35 16 43 H 0.27 16.36 8.31 -92.71 -0.77 15.59 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.09 2.39 4.70 -2.39 -0.01 2.38 16 46 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.11 1.76 6.36 -2.39 -0.02 1.75 16 Total: -1.00 -88.47 367.88 5.85 -82.61 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.97 Total: 28.45 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 5.15 Total: -24.05 kcal Atomic # 7 Polarization: -82.30 SS G_CDS: -2.14 Total: -84.44 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.15 Total: -49.38 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -88.47 5.85 -82.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174495254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.307 kcal (2) G-P(sol) polarization free energy of solvation -88.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds