Wall clock time and date at job start Tue Mar 31 2020 11:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.50691 * 110.43945 * 64.83392 * 3 2 1 5 5 O 1.21281 * 120.00413 * 242.46129 * 4 3 2 6 6 N 1.34779 * 120.00096 * 62.46046 * 4 3 2 7 7 C 1.46500 * 120.00189 * 174.97476 * 6 4 3 8 8 C 1.50703 * 109.47063 * 180.02562 * 7 6 4 9 9 C 1.38299 * 119.93184 * 90.00350 * 8 7 6 10 10 C 1.38101 * 120.06690 * 180.29710 * 9 8 7 11 11 C 1.38876 * 119.93143 * 359.47345 * 10 9 8 12 12 O 1.35749 * 120.06648 * 180.25422 * 11 10 9 13 13 C 1.34838 * 117.00081 * 185.99037 * 12 11 10 14 14 H 1.08000 * 119.99750 * 5.42844 * 13 12 11 15 15 C 1.38647 * 120.00386 * 185.42473 * 13 12 11 16 16 N 1.31555 * 120.00432 * 180.02562 * 15 13 12 17 17 Si 1.86807 * 119.99973 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46917 * 90.00063 * 17 15 13 19 19 H 1.48492 * 109.47193 * 210.00019 * 17 15 13 20 20 H 1.48494 * 109.47031 * 330.00339 * 17 15 13 21 21 C 1.38871 * 119.86275 * 0.52406 * 11 10 9 22 22 C 1.38102 * 119.93232 * 359.72827 * 21 11 10 23 23 C 1.54887 * 110.59716 * 187.45575 * 3 2 1 24 24 C 1.54886 * 102.75101 * 156.67317 * 23 3 2 25 25 C 1.54262 * 104.19656 * 322.05585 * 24 23 3 26 26 C 1.53873 * 106.59841 * 23.60923 * 25 24 23 27 27 H 1.08998 * 109.47110 * 175.04093 * 1 2 3 28 28 H 1.09004 * 109.47280 * 295.03873 * 1 2 3 29 29 H 1.08993 * 109.47207 * 55.04277 * 1 2 3 30 30 H 1.08997 * 109.47236 * 239.99635 * 2 1 3 31 31 H 1.08999 * 109.46619 * 119.99552 * 2 1 3 32 32 H 0.96999 * 119.99784 * 354.98044 * 6 4 3 33 33 H 1.08998 * 109.47169 * 60.00576 * 7 6 4 34 34 H 1.09001 * 109.47425 * 300.00452 * 7 6 4 35 35 H 1.07996 * 119.96672 * 0.02562 * 9 8 7 36 36 H 1.08002 * 120.03208 * 179.71985 * 10 9 8 37 37 H 0.96991 * 120.00383 * 180.02562 * 16 15 13 38 38 H 1.08002 * 120.03575 * 179.70303 * 21 11 10 39 39 H 1.07997 * 119.96810 * 179.97438 * 22 21 11 40 40 H 1.08999 * 110.75569 * 274.98512 * 23 3 2 41 41 H 1.09005 * 110.76134 * 38.35799 * 23 3 2 42 42 H 1.09003 * 110.49289 * 203.37737 * 24 23 3 43 43 H 1.09002 * 110.48980 * 80.73713 * 24 23 3 44 44 H 1.08997 * 110.03568 * 264.32472 * 25 24 23 45 45 H 1.09000 * 110.03458 * 142.89599 * 25 24 23 46 46 H 1.09000 * 110.03252 * 240.71665 * 26 25 24 47 47 H 1.09000 * 110.03518 * 119.28248 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6492 2.1388 1.2780 5 8 0.9169 3.1049 1.2429 6 7 2.1135 1.6879 2.4602 7 6 1.8245 2.4279 3.6911 8 6 2.4530 1.7187 4.8629 9 6 3.7427 2.0345 5.2498 10 6 4.3236 1.3820 6.3194 11 6 3.6073 0.4157 7.0135 12 8 4.1738 -0.2237 8.0686 13 6 3.4728 -1.2352 8.6196 14 1 2.5481 -1.5610 8.1666 15 6 3.9390 -1.8571 9.7677 16 7 3.2554 -2.8443 10.3051 17 14 5.5388 -1.2942 10.5509 18 1 5.2553 -0.2264 11.5433 19 1 6.1878 -2.4431 11.2319 20 1 6.4451 -0.7653 9.5001 21 6 2.3125 0.1009 6.6227 22 6 1.7389 0.7532 5.5490 23 6 3.5770 1.4771 -0.1881 24 6 3.8196 2.8961 -0.7595 25 6 2.6236 3.1331 -1.7045 26 6 1.4920 2.2088 -1.2217 27 1 -0.3633 -1.0238 -0.0888 28 1 -0.3634 0.4349 0.9311 29 1 -0.3633 0.5888 -0.8422 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.6391 0.8734 2.4961 33 1 0.7457 2.4844 3.8363 34 1 2.2340 3.4352 3.6142 35 1 4.2977 2.7889 4.7121 36 1 5.3324 1.6258 6.6182 37 1 3.5813 -3.2791 11.1084 38 1 1.7546 -0.6536 7.1576 39 1 0.7322 0.5085 5.2443 40 1 4.0860 1.3533 0.7677 41 1 3.8965 0.7148 -0.8987 42 1 4.7569 2.9288 -1.3149 43 1 3.8244 3.6346 0.0423 44 1 2.9006 2.8807 -2.7280 45 1 2.3047 4.1739 -1.6494 46 1 1.2200 1.5079 -2.0109 47 1 0.6240 2.8011 -0.9322 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176515517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:56 Heat of formation + Delta-G solvation = -81.629440 kcal Electronic energy + Delta-G solvation = -26325.579986 eV Core-core repulsion = 22665.120548 eV Total energy + Delta-G solvation = -3660.459438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.62333 -40.90774 -38.86879 -38.06975 -35.71606 -34.47198 -34.16133 -31.91146 -31.61093 -29.70019 -28.78383 -27.71122 -26.14816 -23.76862 -23.73355 -23.27658 -22.07965 -21.22942 -20.15296 -19.82106 -19.12170 -17.81805 -17.09384 -16.89611 -16.61478 -16.40866 -15.91930 -15.69665 -15.59615 -15.49674 -15.10876 -14.87856 -14.45692 -14.38549 -14.28487 -14.08060 -14.01473 -13.88842 -13.32148 -13.13043 -12.99772 -12.59877 -12.48553 -12.36070 -12.32103 -12.18174 -12.07835 -11.94336 -11.92854 -11.50823 -11.43676 -11.33842 -11.28413 -10.94712 -10.66200 -10.05119 -9.85149 -9.10616 -8.51674 -6.24710 0.47627 0.52776 1.32250 1.35549 1.52052 1.69674 2.26901 2.29036 2.78836 3.06975 3.10788 3.47718 3.66838 3.71168 3.82703 3.99039 4.08981 4.12437 4.23630 4.33401 4.37545 4.41251 4.52573 4.57561 4.62921 4.70492 4.72279 4.79679 4.80931 4.90250 4.93560 4.97237 5.08540 5.10756 5.18462 5.20157 5.20902 5.27915 5.32773 5.35894 5.39658 5.45183 5.52374 5.55115 5.69204 5.76836 5.86724 6.17530 6.60959 6.82532 7.28910 7.55250 8.59721 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023538 B = 0.002535 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.258649 B =11043.528008 C =11353.811963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 C -0.081 4.081 4 C 0.527 3.473 5 O -0.582 6.582 6 N -0.716 5.716 7 C 0.183 3.817 8 C -0.173 4.173 9 C -0.045 4.045 10 C -0.190 4.190 11 C 0.130 3.870 12 O -0.241 6.241 13 C -0.399 4.399 14 H 0.082 0.918 15 C 0.011 3.989 16 N -0.922 5.922 17 Si 0.970 3.030 18 H -0.268 1.268 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.237 4.237 22 C -0.051 4.051 23 C -0.109 4.109 24 C -0.127 4.127 25 C -0.123 4.123 26 C -0.107 4.107 27 H 0.068 0.932 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.409 0.591 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.285 0.715 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.050 0.950 46 H 0.087 0.913 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.088 8.427 -24.123 25.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.084 4.084 4 C 0.315 3.685 5 O -0.462 6.462 6 N -0.367 5.367 7 C 0.060 3.940 8 C -0.174 4.174 9 C -0.063 4.063 10 C -0.209 4.209 11 C 0.080 3.920 12 O -0.148 6.148 13 C -0.475 4.475 14 H 0.099 0.901 15 C -0.188 4.188 16 N -0.562 5.562 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.193 1.193 20 H -0.184 1.184 21 C -0.256 4.256 22 C -0.070 4.070 23 C -0.146 4.146 24 C -0.164 4.164 25 C -0.160 4.160 26 C -0.145 4.145 27 H 0.087 0.913 28 H 0.049 0.951 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.245 0.755 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.120 0.880 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.763 9.008 -23.856 25.511 hybrid contribution 0.082 -0.549 1.175 1.300 sum 0.845 8.459 -22.680 24.221 Atomic orbital electron populations 1.21831 0.96046 1.02273 1.01196 1.21596 0.95853 0.92798 1.04149 1.21721 0.98301 0.96507 0.91891 1.20867 0.78551 0.83393 0.85693 1.90643 1.38035 1.29800 1.87726 1.46147 1.55539 1.29089 1.05964 1.19877 0.99250 0.94301 0.80615 1.19530 0.95880 1.01709 1.00280 1.20930 0.93868 0.97435 0.94092 1.20511 1.01240 0.99880 0.99273 1.19732 0.92268 0.92200 0.87802 1.83536 1.45035 1.44254 1.41984 1.20689 1.07454 1.09175 1.10205 0.90081 1.25288 1.02395 0.95348 0.95759 1.69723 1.40618 1.23691 1.22184 0.85223 0.78517 0.78316 0.78724 1.19284 1.19282 1.18353 1.21256 0.96209 1.05785 1.02350 1.20893 0.99339 0.93805 0.92944 1.22657 0.91337 0.98250 1.02383 1.22374 0.98983 0.96404 0.98676 1.22118 0.94857 0.99114 0.99927 1.22152 0.98597 0.98164 0.95568 0.91336 0.95080 0.92063 0.88412 0.91191 0.75484 0.91879 0.90766 0.82893 0.84996 0.90524 0.87324 0.85155 0.90920 0.88035 0.89769 0.93602 0.89999 0.93113 0.89401 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 9.48 71.98 0.68 -1.84 16 2 C -0.11 -1.44 4.87 30.59 0.15 -1.29 16 3 C -0.08 -1.33 0.47 -51.86 -0.02 -1.35 16 4 C 0.53 12.20 5.43 87.65 0.48 12.68 16 5 O -0.58 -18.08 15.43 -3.03 -0.05 -18.13 16 6 N -0.72 -15.23 5.19 -466.79 -2.42 -17.66 16 7 C 0.18 4.37 5.80 85.63 0.50 4.87 16 8 C -0.17 -4.74 5.25 -19.83 -0.10 -4.85 16 9 C -0.04 -1.23 9.69 22.25 0.22 -1.02 16 10 C -0.19 -6.63 9.99 22.39 0.22 -6.41 16 11 C 0.13 5.71 6.65 22.57 0.15 5.86 16 12 O -0.24 -12.57 8.59 -22.81 -0.20 -12.76 16 13 C -0.40 -22.84 9.90 67.92 0.67 -22.16 16 14 H 0.08 4.87 5.53 -2.91 -0.02 4.85 16 15 C 0.01 0.61 5.49 84.83 0.47 1.08 16 16 N -0.92 -54.11 13.96 21.61 0.30 -53.81 16 17 Si 0.97 44.25 28.62 68.60 1.96 46.21 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.24 -9.82 9.13 22.39 0.20 -9.61 16 22 C -0.05 -1.66 9.69 22.25 0.22 -1.44 16 23 C -0.11 -1.40 5.80 31.88 0.18 -1.21 16 24 C -0.13 -1.82 6.61 31.67 0.21 -1.61 16 25 C -0.12 -1.82 6.80 31.32 0.21 -1.60 16 26 C -0.11 -1.77 4.59 31.32 0.14 -1.63 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.03 0.64 7.59 -2.39 -0.02 0.62 16 29 H 0.06 0.96 6.78 -2.39 -0.02 0.94 16 30 H 0.10 0.92 8.08 -2.39 -0.02 0.90 16 31 H 0.07 0.94 7.57 -2.39 -0.02 0.92 16 32 H 0.41 7.55 7.63 -92.71 -0.71 6.84 16 33 H 0.06 1.62 8.08 -2.39 -0.02 1.60 16 34 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 35 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 37 H 0.29 15.35 8.31 -92.72 -0.77 14.58 16 38 H 0.11 5.04 5.71 -2.91 -0.02 5.02 16 39 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.07 0.95 7.53 -2.39 -0.02 0.93 16 41 H 0.10 0.90 8.02 -2.38 -0.02 0.89 16 42 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 45 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.09 1.10 7.46 -2.39 -0.02 1.09 16 47 H 0.06 1.26 6.82 -2.39 -0.02 1.24 16 Total: -1.00 -67.51 376.84 4.43 -63.07 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.26 Total: 24.62 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.57 Total: -31.54 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -2.12 Total: -71.47 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -0.24 Total: -30.89 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.96 Total: 46.21 kcal Total: -67.51 4.43 -63.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176515517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.555 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds