Wall clock time and date at job start Tue Mar 31 2020 12:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47054 * 2 1 4 4 C 1.53005 * 109.45928 * 303.36795 * 3 2 1 5 5 O 1.42901 * 109.46876 * 305.30063 * 4 3 2 6 6 C 1.53043 * 109.46046 * 183.41266 * 3 2 1 7 7 C 1.53191 * 109.30829 * 301.33716 * 6 3 2 8 8 N 1.46919 * 108.77946 * 305.36451 * 7 6 3 9 9 C 1.34773 * 120.63658 * 233.63027 * 8 7 6 10 10 O 1.21546 * 120.00448 * 174.13536 * 9 8 7 11 11 C 1.47891 * 119.99689 * 354.13916 * 9 8 7 12 12 C 1.39925 * 120.02239 * 324.83106 * 11 9 8 13 13 C 1.38327 * 120.35426 * 179.71649 * 12 11 9 14 14 C 1.37756 * 120.41421 * 0.55959 * 13 12 11 15 15 C 1.40748 * 120.03713 * 359.72491 * 14 13 12 16 16 C 1.41439 * 120.17634 * 180.02562 * 15 14 13 17 17 H 1.07994 * 119.99898 * 328.95313 * 16 15 14 18 18 C 1.39939 * 120.00021 * 148.94977 * 16 15 14 19 19 N 1.30825 * 120.00052 * 346.07935 * 18 16 15 20 20 Si 1.86802 * 119.99929 * 166.07379 * 18 16 15 21 21 H 1.48497 * 109.47074 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46735 * 120.00126 * 20 18 16 23 23 H 1.48498 * 109.47205 * 240.00038 * 20 18 16 24 24 C 1.38992 * 120.02781 * 145.10458 * 11 9 8 25 25 C 1.46928 * 118.73512 * 53.61077 * 8 7 6 26 26 C 1.53042 * 109.46619 * 63.34002 * 3 2 1 27 27 H 1.09006 * 109.47307 * 61.36641 * 1 2 3 28 28 H 1.09004 * 109.47281 * 181.36004 * 1 2 3 29 29 H 1.08999 * 109.47873 * 301.36474 * 1 2 3 30 30 H 1.08998 * 109.47366 * 239.99841 * 2 1 3 31 31 H 1.09000 * 109.46886 * 119.99445 * 2 1 3 32 32 H 1.08998 * 109.47418 * 65.29998 * 4 3 2 33 33 H 1.09003 * 109.47267 * 185.30576 * 4 3 2 34 34 H 0.96704 * 113.99956 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.49704 * 61.29526 * 6 3 2 36 36 H 1.09007 * 109.49545 * 181.38957 * 6 3 2 37 37 H 1.09007 * 109.58524 * 185.57628 * 7 6 3 38 38 H 1.09003 * 109.70056 * 65.22555 * 7 6 3 39 39 H 1.07997 * 119.82088 * 359.97438 * 12 11 9 40 40 H 1.08000 * 119.79235 * 180.25620 * 13 12 11 41 41 H 1.07994 * 119.97892 * 179.69717 * 14 13 12 42 42 H 0.97004 * 120.00265 * 180.02562 * 19 18 16 43 43 H 1.08006 * 120.20009 * 0.02572 * 24 11 9 44 44 H 1.09007 * 109.58664 * 186.59917 * 25 8 7 45 45 H 1.08996 * 109.70614 * 66.24912 * 25 8 7 46 46 H 1.09001 * 109.50039 * 178.60822 * 26 3 2 47 47 H 1.09000 * 109.49273 * 298.70584 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4617 2.1875 -1.2048 5 8 1.7684 1.4688 -2.4013 6 6 3.5679 1.4430 -0.0859 7 6 4.1424 0.6670 1.1034 8 7 3.6077 1.2411 2.3456 9 6 4.4368 1.6416 3.3297 10 8 3.9906 2.2117 4.3060 11 6 5.8897 1.3873 3.2217 12 6 6.3520 0.2147 2.6142 13 6 7.7094 -0.0273 2.5042 14 6 8.6216 0.8773 3.0015 15 6 8.1753 2.0596 3.6212 16 6 9.1093 2.9907 4.1323 17 1 10.0598 2.6481 4.5137 18 6 8.8018 4.3558 4.1437 19 7 7.7892 4.8041 3.4471 20 14 9.8370 5.5380 5.1538 21 1 10.9149 4.7858 5.8448 22 1 10.4409 6.5567 4.2578 23 1 8.9784 6.2113 6.1611 24 6 6.7969 2.3103 3.7286 25 6 2.1517 1.3709 2.4943 26 6 1.5995 2.1391 1.2895 27 1 -0.3634 0.4925 -0.9020 28 1 -0.3634 -1.0274 0.0244 29 1 -0.3635 0.5349 0.8774 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.3801 2.2689 -1.0970 33 1 1.8976 3.1852 -1.2585 34 1 1.4313 1.8841 -3.2069 35 1 3.8802 0.9677 -1.0157 36 1 3.9333 2.4698 -0.0611 37 1 5.2295 0.7479 1.1018 38 1 3.8540 -0.3817 1.0317 39 1 5.6451 -0.5033 2.2253 40 1 8.0563 -0.9335 2.0299 41 1 9.6798 0.6789 2.9162 42 1 7.5762 5.7504 3.4547 43 1 6.4445 3.2145 4.2027 44 1 1.9251 1.9162 3.4106 45 1 1.6969 0.3812 2.5363 46 1 1.9835 3.1592 1.3014 47 1 0.5108 2.1590 1.3386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179381193.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:24 Heat of formation + Delta-G solvation = -91.009502 kcal Electronic energy + Delta-G solvation = -27516.130791 eV Core-core repulsion = 23855.264603 eV Total energy + Delta-G solvation = -3660.866188 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.73725 -40.00433 -38.77789 -37.23593 -35.70285 -35.05406 -32.67639 -31.91616 -31.37701 -31.02273 -28.29792 -27.29092 -25.05061 -24.92964 -23.95696 -22.96696 -22.70788 -20.80052 -19.50338 -18.75331 -18.19186 -17.63794 -17.40406 -16.75178 -16.62264 -16.45192 -16.00969 -15.91552 -15.40837 -15.23964 -14.98287 -14.54523 -14.48209 -14.24959 -14.08843 -13.79012 -13.58639 -13.32472 -13.16639 -13.02467 -12.90764 -12.83963 -12.73819 -12.32290 -12.26859 -12.14030 -11.93132 -11.89661 -11.53368 -11.36211 -11.26799 -11.17871 -11.10081 -10.75833 -10.65338 -9.68841 -9.37628 -9.30984 -8.65588 -6.40350 0.44454 0.97867 1.35682 1.44334 1.51202 1.88567 2.11212 2.19575 2.74812 3.30756 3.60209 3.62299 3.71620 3.87328 4.01103 4.12484 4.19707 4.27207 4.38592 4.43596 4.50773 4.55667 4.60033 4.64131 4.67465 4.72151 4.78859 4.86552 4.89436 4.97711 5.00905 5.03723 5.07092 5.15214 5.17419 5.29196 5.29746 5.37302 5.43738 5.49956 5.60794 5.66691 5.82895 5.92924 6.01753 6.26436 6.37363 6.59406 6.88807 6.92388 6.97684 7.19751 8.33764 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003440 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.224862 B = 8137.513192 C = 8382.156776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.052 4.052 4 C 0.090 3.910 5 O -0.580 6.580 6 C -0.116 4.116 7 C 0.091 3.909 8 N -0.600 5.600 9 C 0.561 3.439 10 O -0.594 6.594 11 C -0.134 4.134 12 C -0.193 4.193 13 C -0.096 4.096 14 C -0.210 4.210 15 C 0.073 3.927 16 C -0.502 4.502 17 H 0.082 0.918 18 C 0.030 3.970 19 N -0.837 5.837 20 Si 0.982 3.018 21 H -0.253 1.253 22 H -0.263 1.263 23 H -0.272 1.272 24 C -0.124 4.124 25 C 0.109 3.891 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.393 0.607 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.110 0.890 42 H 0.284 0.716 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.048 0.952 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.836 -7.011 -11.574 19.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 C -0.052 4.052 4 C 0.012 3.988 5 O -0.388 6.388 6 C -0.154 4.154 7 C -0.031 4.031 8 N -0.332 5.332 9 C 0.352 3.648 10 O -0.476 6.476 11 C -0.137 4.137 12 C -0.213 4.213 13 C -0.114 4.114 14 C -0.230 4.230 15 C 0.071 3.929 16 C -0.532 4.532 17 H 0.101 0.899 18 C -0.183 4.183 19 N -0.464 5.464 20 Si 0.802 3.198 21 H -0.176 1.176 22 H -0.188 1.188 23 H -0.197 1.197 24 C -0.145 4.145 25 C -0.013 4.013 26 C -0.155 4.155 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.128 0.872 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.067 0.933 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.927 -6.912 -10.734 18.893 hybrid contribution 0.334 1.551 0.254 1.607 sum -13.592 -5.361 -10.480 17.981 Atomic orbital electron populations 1.21833 0.94829 1.02011 1.02029 1.21500 0.96729 0.94233 1.01928 1.20541 0.94331 0.96961 0.93348 1.22137 0.98969 0.93274 0.84435 1.86431 1.81802 1.53482 1.17055 1.21890 0.95466 0.99882 0.98135 1.22448 1.00861 0.97782 0.81971 1.47973 1.06645 1.61805 1.16759 1.18886 0.87168 0.76603 0.82096 1.90635 1.78572 1.44260 1.34177 1.19708 0.91237 0.98242 1.04493 1.21004 0.96120 0.97413 1.06726 1.20949 0.92559 0.98792 0.99103 1.21469 0.98956 0.97681 1.04861 1.17899 0.91963 0.92935 0.90103 1.19841 1.03094 0.91857 1.38455 0.89950 1.26771 0.96258 1.00940 0.94327 1.69867 1.26876 1.16846 1.32774 0.85163 0.78649 0.77512 0.78430 1.17573 1.18794 1.19720 1.21194 0.93246 0.98356 1.01673 1.21708 0.78760 1.01678 0.99122 1.21902 1.02158 0.98356 0.93131 0.92208 0.92402 0.92259 0.91497 0.92129 0.91648 0.94556 0.75745 0.89241 0.94033 0.88719 0.88990 0.84440 0.84154 0.87180 0.90542 0.89714 0.91339 0.89019 0.93304 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.19 71.98 0.66 -1.41 16 2 C -0.11 -1.86 3.97 30.59 0.12 -1.74 16 3 C -0.05 -1.04 0.38 -52.15 -0.02 -1.06 16 4 C 0.09 1.49 5.30 71.98 0.38 1.87 16 5 O -0.58 -9.29 12.36 -148.98 -1.84 -11.13 16 6 C -0.12 -2.93 4.82 30.67 0.15 -2.78 16 7 C 0.09 2.58 4.29 86.36 0.37 2.95 16 8 N -0.60 -20.64 2.97 -822.27 -2.44 -23.09 16 9 C 0.56 25.80 7.38 86.80 0.64 26.44 16 10 O -0.59 -31.61 16.23 -3.86 -0.06 -31.67 16 11 C -0.13 -6.48 5.29 -20.13 -0.11 -6.59 16 12 C -0.19 -7.78 7.36 22.70 0.17 -7.61 16 13 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 14 C -0.21 -9.85 9.78 22.77 0.22 -9.63 16 15 C 0.07 4.01 5.50 -21.32 -0.12 3.90 16 16 C -0.50 -27.76 9.04 23.47 0.21 -27.54 16 17 H 0.08 4.32 7.88 -2.91 -0.02 4.30 16 18 C 0.03 1.61 5.17 85.26 0.44 2.05 16 19 N -0.84 -46.94 11.18 21.83 0.24 -46.70 16 20 Si 0.98 40.37 29.58 68.60 2.03 42.39 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 C -0.12 -7.00 8.20 23.01 0.19 -6.81 16 25 C 0.11 3.02 5.97 86.36 0.52 3.54 16 26 C -0.12 -2.60 4.59 30.67 0.14 -2.46 16 27 H 0.06 0.78 6.57 -2.38 -0.02 0.76 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.77 6.48 -2.39 -0.02 0.75 16 30 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 31 H 0.06 1.12 4.99 -2.39 -0.01 1.10 16 32 H 0.07 0.85 6.71 -2.39 -0.02 0.83 16 33 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.39 2.95 9.12 -74.05 -0.68 2.27 16 35 H 0.09 2.12 7.80 -2.39 -0.02 2.10 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.09 3.12 4.45 -2.38 -0.01 3.11 16 38 H 0.09 2.13 6.68 -2.39 -0.02 2.11 16 39 H 0.14 4.48 6.01 -2.91 -0.02 4.47 16 40 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.28 14.64 8.30 -92.71 -0.77 13.87 16 43 H 0.08 5.35 6.45 -2.91 -0.02 5.33 16 44 H 0.07 2.23 7.00 -2.38 -0.02 2.21 16 45 H 0.09 2.07 6.62 -2.39 -0.02 2.06 16 46 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.10 1.71 6.55 -2.39 -0.02 1.69 16 Total: -1.00 -71.15 357.83 2.44 -68.71 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.32 Total: 31.97 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 4.19 Total: -30.49 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -2.20 Total: -69.79 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -1.90 Total: -42.80 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.39 kcal Total: -71.15 2.44 -68.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179381193.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.297 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds