Wall clock time and date at job start Tue Mar 31 2020 12:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46718 * 2 1 4 4 C 1.52995 * 109.47300 * 119.99601 * 2 1 3 5 5 C 1.53005 * 115.56217 * 276.43790 * 4 2 1 6 6 C 1.52996 * 117.49936 * 130.74161 * 4 2 1 7 7 C 1.52999 * 60.00389 * 252.51420 * 6 4 2 8 8 H 1.09002 * 117.50004 * 252.51451 * 7 6 4 9 9 C 1.50697 * 117.49972 * 107.49009 * 7 6 4 10 10 O 1.21281 * 119.99783 * 322.14745 * 9 7 6 11 11 N 1.34774 * 119.99997 * 142.14898 * 9 7 6 12 12 C 1.46504 * 119.99896 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47099 * 180.02562 * 12 11 9 14 14 C 1.38305 * 119.92959 * 269.72651 * 13 12 11 15 15 C 1.38103 * 120.06866 * 179.72497 * 14 13 12 16 16 C 1.38880 * 119.92634 * 0.52136 * 15 14 13 17 17 O 1.35757 * 120.06432 * 179.72146 * 16 15 14 18 18 C 1.34834 * 116.99725 * 188.05351 * 17 16 15 19 19 H 1.07997 * 120.00115 * 6.69572 * 18 17 16 20 20 C 1.38651 * 119.99888 * 186.69930 * 18 17 16 21 21 N 1.31559 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00263 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46896 * 89.99947 * 22 20 18 24 24 H 1.48499 * 109.47440 * 210.00084 * 22 20 18 25 25 H 1.48507 * 109.47171 * 330.00363 * 22 20 18 26 26 C 1.38880 * 119.86568 * 359.75699 * 16 15 14 27 27 C 1.38098 * 119.93095 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.46962 * 63.07098 * 1 2 3 29 29 H 1.09005 * 109.46526 * 183.06325 * 1 2 3 30 30 H 1.08995 * 109.47342 * 303.06633 * 1 2 3 31 31 H 1.08999 * 109.47130 * 240.00447 * 2 1 3 32 32 H 1.09003 * 109.47130 * 174.04911 * 3 2 1 33 33 H 1.09002 * 109.47055 * 294.04617 * 3 2 1 34 34 H 1.08997 * 109.47242 * 54.04636 * 3 2 1 35 35 H 1.09001 * 109.46750 * 205.68827 * 5 4 2 36 36 H 1.09001 * 109.46940 * 325.68472 * 5 4 2 37 37 H 1.09001 * 109.47107 * 85.68934 * 5 4 2 38 38 H 1.09001 * 117.49856 * 145.02298 * 6 4 2 39 39 H 1.09001 * 117.49832 * 0.02562 * 6 4 2 40 40 H 0.96999 * 120.00325 * 359.97438 * 11 9 7 41 41 H 1.09008 * 109.46843 * 299.99866 * 12 11 9 42 42 H 1.08995 * 109.46932 * 60.00022 * 12 11 9 43 43 H 1.07998 * 119.96309 * 359.97438 * 14 13 12 44 44 H 1.07998 * 120.03630 * 180.27543 * 15 14 13 45 45 H 0.97008 * 120.00099 * 179.97438 * 21 20 18 46 46 H 1.08006 * 120.03430 * 180.02562 * 26 16 15 47 47 H 1.07994 * 119.96472 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 2.1142 0.1298 2.5187 6 6 3.1106 -1.7970 1.0563 7 6 1.6772 -2.1989 1.4095 8 1 1.4914 -2.5648 2.4193 9 6 0.8449 -2.8326 0.3248 10 8 0.9396 -2.4409 -0.8191 11 7 -0.0047 -3.8346 0.6259 12 6 -0.8142 -4.4503 -0.4286 13 6 -1.6732 -5.5360 0.1669 14 6 -1.1984 -6.8333 0.2328 15 6 -1.9809 -7.8294 0.7831 16 6 -3.2500 -7.5292 1.2607 17 8 -4.0237 -8.5073 1.7970 18 6 -5.3009 -8.1872 2.0874 19 1 -5.6970 -7.2263 1.7937 20 6 -6.1058 -9.0916 2.7632 21 7 -5.6231 -10.2618 3.1214 22 14 -7.8750 -8.6479 3.1662 23 1 -8.7584 -9.0742 2.0513 24 1 -8.2862 -9.3379 4.4152 25 1 -7.9869 -7.1788 3.3524 26 6 -3.7261 -6.2266 1.1878 27 6 -2.9366 -5.2339 0.6414 28 1 -0.3633 0.4654 -0.9162 29 1 -0.3632 -1.0263 0.0549 30 1 -0.3634 0.5607 0.8612 31 1 1.8934 -0.5138 -0.8900 32 1 3.1248 1.4445 0.1065 33 1 1.7662 1.9247 -0.9385 34 1 1.5922 1.9862 0.8319 35 1 2.8700 -0.2814 3.1880 36 1 2.3806 1.1533 2.2550 37 1 1.1451 0.1235 3.0174 38 1 3.8679 -1.8986 1.8337 39 1 3.4519 -1.9907 0.0394 40 1 -0.0802 -4.1481 1.5407 41 1 -1.4513 -3.6934 -0.8862 42 1 -0.1585 -4.8797 -1.1860 43 1 -0.2131 -7.0668 -0.1427 44 1 -1.6078 -8.8414 0.8384 45 1 -6.1861 -10.8945 3.5946 46 1 -4.7125 -5.9900 1.5587 47 1 -3.3062 -4.2208 0.5848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186587643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:29 Heat of formation + Delta-G solvation = -28.882056 kcal Electronic energy + Delta-G solvation = -25797.595331 eV Core-core repulsion = 22139.423191 eV Total energy + Delta-G solvation = -3658.172140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.61211 -39.18864 -37.89439 -36.73575 -34.37149 -33.60154 -32.37858 -30.31662 -30.06170 -28.90065 -27.06064 -26.19900 -25.12739 -23.29310 -22.70196 -22.06575 -20.65104 -20.27466 -18.77578 -18.09317 -17.24035 -16.95040 -15.97084 -15.55320 -15.13411 -14.89319 -14.64520 -14.54647 -14.10990 -13.98706 -13.66753 -13.60259 -13.43307 -13.12968 -13.05138 -12.79299 -12.62413 -12.53584 -12.13957 -12.04590 -11.82432 -11.68309 -11.42101 -11.39754 -11.21328 -11.01737 -10.82841 -10.78559 -10.66860 -10.49387 -10.22638 -9.92685 -9.61157 -9.48908 -8.92658 -8.90771 -8.30174 -7.34406 -6.54430 -4.13387 2.05199 2.11180 2.44737 3.06773 3.08434 3.13230 3.35519 3.69520 3.89292 4.37462 4.44185 4.55005 4.64375 4.74413 4.94884 5.01407 5.08873 5.13908 5.18307 5.23204 5.31022 5.41035 5.45017 5.51727 5.53591 5.58400 5.64716 5.71904 5.78121 5.79185 5.81667 5.86425 5.89005 5.92982 6.11463 6.14164 6.29062 6.33732 6.39635 6.56147 6.60110 6.78715 6.94992 7.11990 7.25347 7.33089 7.62902 7.70622 7.90159 8.30912 8.90928 9.59245 10.63045 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.002237 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.504638 B =12512.229704 C =12898.033239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.084 4.084 5 C -0.123 4.123 6 C -0.142 4.142 7 C -0.190 4.190 8 H 0.117 0.883 9 C 0.541 3.459 10 O -0.543 6.543 11 N -0.720 5.720 12 C 0.180 3.820 13 C -0.214 4.214 14 C -0.055 4.055 15 C -0.195 4.195 16 C 0.160 3.840 17 O -0.174 6.174 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.235 4.235 27 C -0.051 4.051 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.401 0.599 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.271 0.729 46 H 0.128 0.872 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.788 18.280 -1.923 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.203 4.203 4 C -0.085 4.085 5 C -0.179 4.179 6 C -0.179 4.179 7 C -0.211 4.211 8 H 0.135 0.865 9 C 0.328 3.672 10 O -0.421 6.421 11 N -0.370 5.370 12 C 0.058 3.942 13 C -0.216 4.216 14 C -0.073 4.073 15 C -0.214 4.214 16 C 0.105 3.895 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.255 4.255 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.236 0.764 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.130 0.870 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.146 0.854 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.778 18.080 -2.568 22.876 hybrid contribution -1.087 -0.148 0.826 1.374 sum 12.691 17.932 -1.742 22.038 Atomic orbital electron populations 1.21862 0.95013 1.02316 1.00656 1.20703 0.95910 0.94914 0.96207 1.21915 1.00758 0.96185 1.01431 1.21546 1.01379 0.87898 0.97655 1.21501 1.01960 0.99852 0.94628 1.23203 0.89800 1.01530 1.03368 1.22414 0.99444 0.99759 0.99486 0.86518 1.19533 0.79556 0.79256 0.88834 1.90665 1.67437 1.62530 1.21502 1.46304 1.41876 1.36158 1.12686 1.19960 0.92075 0.93260 0.88891 1.19214 0.96588 0.94153 1.11611 1.20532 0.98007 0.91886 0.96913 1.20217 0.94136 0.99801 1.07296 1.19473 0.90732 0.88170 0.91123 1.84006 1.22424 1.33149 1.68040 1.21333 0.83504 1.03867 1.38133 0.89018 1.25326 1.00335 0.95028 0.95811 1.70038 1.36937 1.06243 1.36107 0.85697 0.80354 0.78904 0.78411 1.19775 1.20183 1.19145 1.21169 1.02339 0.92922 1.09030 1.20640 0.93027 0.97857 0.95484 0.93088 0.92046 0.93695 0.89071 0.92765 0.92846 0.92660 0.92397 0.91030 0.92051 0.88120 0.87946 0.76430 0.91687 0.91624 0.86989 0.86377 0.91870 0.85441 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.57 37.16 0.32 -1.24 16 2 C -0.06 -0.60 2.17 -90.62 -0.20 -0.79 16 3 C -0.15 -1.17 8.03 37.16 0.30 -0.87 16 4 C -0.08 -0.76 1.86 -154.51 -0.29 -1.05 16 5 C -0.12 -0.88 9.56 37.16 0.36 -0.52 16 6 C -0.14 -1.25 9.38 -26.73 -0.25 -1.50 16 7 C -0.19 -1.87 5.82 -91.77 -0.53 -2.41 16 8 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 9 C 0.54 6.80 5.61 -10.99 -0.06 6.74 16 10 O -0.54 -8.21 12.72 5.56 0.07 -8.14 16 11 N -0.72 -8.88 5.55 -61.47 -0.34 -9.22 16 12 C 0.18 2.50 5.80 -5.19 -0.03 2.47 16 13 C -0.21 -3.41 5.25 -104.57 -0.55 -3.96 16 14 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 15 C -0.20 -3.91 9.99 -39.39 -0.39 -4.31 16 16 C 0.16 3.69 6.64 -39.11 -0.26 3.43 16 17 O -0.17 -4.80 9.76 0.01 0.00 -4.80 16 18 C -0.39 -10.64 9.40 30.88 0.29 -10.35 16 19 H 0.09 2.30 5.39 -52.49 -0.28 2.02 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 21 N -0.86 -24.59 13.67 55.48 0.76 -23.83 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 26 C -0.24 -4.86 9.11 -39.40 -0.36 -5.22 16 27 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.79 4.91 -51.93 -0.26 0.54 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.12 6.41 -51.93 -0.33 0.78 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.40 6.81 -51.93 -0.35 0.05 16 35 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 36 H 0.07 0.46 5.73 -51.93 -0.30 0.17 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.10 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.10 1.01 8.03 -51.93 -0.42 0.59 16 40 H 0.40 4.49 8.46 -40.82 -0.35 4.15 16 41 H 0.06 0.92 8.08 -51.92 -0.42 0.50 16 42 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 45 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.13 2.66 5.79 -52.48 -0.30 2.36 16 47 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 379.63 15.07 5.72 5.72 Total: -1.00 -29.98 379.63 -8.53 -38.51 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.20 Total: 7.96 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -2.52 Total: -21.16 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.42 Total: -33.06 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.93 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.98 -8.53 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186587643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.629 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds