Wall clock time and date at job start Tue Mar 31 2020 12:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46718 * 2 1 4 4 C 1.52995 * 109.47300 * 119.99601 * 2 1 3 5 5 C 1.53005 * 115.56217 * 276.43790 * 4 2 1 6 6 C 1.52996 * 117.49936 * 130.74161 * 4 2 1 7 7 C 1.52999 * 60.00389 * 252.51420 * 6 4 2 8 8 H 1.09002 * 117.50004 * 252.51451 * 7 6 4 9 9 C 1.50697 * 117.49972 * 107.49009 * 7 6 4 10 10 O 1.21281 * 119.99783 * 322.14745 * 9 7 6 11 11 N 1.34774 * 119.99997 * 142.14898 * 9 7 6 12 12 C 1.46504 * 119.99896 * 179.97438 * 11 9 7 13 13 C 1.50698 * 109.47099 * 180.02562 * 12 11 9 14 14 C 1.38305 * 119.92959 * 269.72651 * 13 12 11 15 15 C 1.38103 * 120.06866 * 179.72497 * 14 13 12 16 16 C 1.38880 * 119.92634 * 0.52136 * 15 14 13 17 17 O 1.35757 * 120.06432 * 179.72146 * 16 15 14 18 18 C 1.34834 * 116.99725 * 188.05351 * 17 16 15 19 19 H 1.07997 * 120.00115 * 6.69572 * 18 17 16 20 20 C 1.38651 * 119.99888 * 186.69930 * 18 17 16 21 21 N 1.31559 * 119.99740 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00263 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46896 * 89.99947 * 22 20 18 24 24 H 1.48499 * 109.47440 * 210.00084 * 22 20 18 25 25 H 1.48507 * 109.47171 * 330.00363 * 22 20 18 26 26 C 1.38880 * 119.86568 * 359.75699 * 16 15 14 27 27 C 1.38098 * 119.93095 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.46962 * 63.07098 * 1 2 3 29 29 H 1.09005 * 109.46526 * 183.06325 * 1 2 3 30 30 H 1.08995 * 109.47342 * 303.06633 * 1 2 3 31 31 H 1.08999 * 109.47130 * 240.00447 * 2 1 3 32 32 H 1.09003 * 109.47130 * 174.04911 * 3 2 1 33 33 H 1.09002 * 109.47055 * 294.04617 * 3 2 1 34 34 H 1.08997 * 109.47242 * 54.04636 * 3 2 1 35 35 H 1.09001 * 109.46750 * 205.68827 * 5 4 2 36 36 H 1.09001 * 109.46940 * 325.68472 * 5 4 2 37 37 H 1.09001 * 109.47107 * 85.68934 * 5 4 2 38 38 H 1.09001 * 117.49856 * 145.02298 * 6 4 2 39 39 H 1.09001 * 117.49832 * 0.02562 * 6 4 2 40 40 H 0.96999 * 120.00325 * 359.97438 * 11 9 7 41 41 H 1.09008 * 109.46843 * 299.99866 * 12 11 9 42 42 H 1.08995 * 109.46932 * 60.00022 * 12 11 9 43 43 H 1.07998 * 119.96309 * 359.97438 * 14 13 12 44 44 H 1.07998 * 120.03630 * 180.27543 * 15 14 13 45 45 H 0.97008 * 120.00099 * 179.97438 * 21 20 18 46 46 H 1.08006 * 120.03430 * 180.02562 * 26 16 15 47 47 H 1.07994 * 119.96472 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2492 5 6 2.1142 0.1298 2.5187 6 6 3.1106 -1.7970 1.0563 7 6 1.6772 -2.1989 1.4095 8 1 1.4914 -2.5648 2.4193 9 6 0.8449 -2.8326 0.3248 10 8 0.9396 -2.4409 -0.8191 11 7 -0.0047 -3.8346 0.6259 12 6 -0.8142 -4.4503 -0.4286 13 6 -1.6732 -5.5360 0.1669 14 6 -1.1984 -6.8333 0.2328 15 6 -1.9809 -7.8294 0.7831 16 6 -3.2500 -7.5292 1.2607 17 8 -4.0237 -8.5073 1.7970 18 6 -5.3009 -8.1872 2.0874 19 1 -5.6970 -7.2263 1.7937 20 6 -6.1058 -9.0916 2.7632 21 7 -5.6231 -10.2618 3.1214 22 14 -7.8750 -8.6479 3.1662 23 1 -8.7584 -9.0742 2.0513 24 1 -8.2862 -9.3379 4.4152 25 1 -7.9869 -7.1788 3.3524 26 6 -3.7261 -6.2266 1.1878 27 6 -2.9366 -5.2339 0.6414 28 1 -0.3633 0.4654 -0.9162 29 1 -0.3632 -1.0263 0.0549 30 1 -0.3634 0.5607 0.8612 31 1 1.8934 -0.5138 -0.8900 32 1 3.1248 1.4445 0.1065 33 1 1.7662 1.9247 -0.9385 34 1 1.5922 1.9862 0.8319 35 1 2.8700 -0.2814 3.1880 36 1 2.3806 1.1533 2.2550 37 1 1.1451 0.1235 3.0174 38 1 3.8679 -1.8986 1.8337 39 1 3.4519 -1.9907 0.0394 40 1 -0.0802 -4.1481 1.5407 41 1 -1.4513 -3.6934 -0.8862 42 1 -0.1585 -4.8797 -1.1860 43 1 -0.2131 -7.0668 -0.1427 44 1 -1.6078 -8.8414 0.8384 45 1 -6.1861 -10.8945 3.5946 46 1 -4.7125 -5.9900 1.5587 47 1 -3.3062 -4.2208 0.5848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186587643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:28 Heat of formation + Delta-G solvation = -45.810648 kcal Electronic energy + Delta-G solvation = -25798.329410 eV Core-core repulsion = 22139.423191 eV Total energy + Delta-G solvation = -3658.906219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52394 -40.80789 -38.99990 -38.18230 -35.57852 -34.40043 -34.24003 -31.86289 -31.47199 -29.58756 -27.80336 -27.75738 -26.67586 -24.30962 -23.65646 -23.42969 -22.13948 -21.22298 -19.90163 -19.58574 -18.84605 -18.02761 -17.00994 -16.70486 -16.36146 -16.25647 -15.98389 -15.77069 -15.53187 -15.34318 -14.99865 -14.72695 -14.41611 -14.34160 -14.04984 -14.00311 -13.74971 -13.55475 -13.31264 -13.12992 -13.03949 -12.80867 -12.58846 -12.44178 -12.35599 -12.23955 -12.12656 -12.12415 -11.96507 -11.59674 -11.26710 -10.97002 -10.83913 -10.69475 -10.50489 -9.99431 -9.82553 -9.02240 -8.49365 -6.17668 0.52900 0.55676 1.35290 1.43512 1.52265 1.53003 2.16355 2.29463 2.84118 2.93628 3.15983 3.47017 3.65060 3.77441 3.86997 3.91136 4.01426 4.03185 4.16337 4.18236 4.39875 4.43778 4.46900 4.55600 4.60167 4.71124 4.79354 4.82447 4.85117 4.90402 4.98808 5.01834 5.02735 5.07338 5.11254 5.11821 5.22411 5.24622 5.25916 5.39152 5.45309 5.50266 5.55505 5.67597 5.68427 5.73258 5.99834 6.14155 6.64219 6.95402 7.32960 7.74571 8.73370 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023514 B = 0.002237 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.504638 B =12512.229704 C =12898.033239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.060 4.060 3 C -0.141 4.141 4 C -0.082 4.082 5 C -0.120 4.120 6 C -0.135 4.135 7 C -0.198 4.198 8 H 0.136 0.864 9 C 0.540 3.460 10 O -0.571 6.571 11 N -0.716 5.716 12 C 0.187 3.813 13 C -0.181 4.181 14 C -0.044 4.044 15 C -0.204 4.204 16 C 0.122 3.878 17 O -0.229 6.229 18 C -0.412 4.412 19 H 0.101 0.899 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.017 2.983 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.252 1.252 26 C -0.242 4.242 27 C -0.047 4.047 28 H 0.044 0.956 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.409 0.591 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.147 0.853 44 H 0.116 0.884 45 H 0.273 0.727 46 H 0.120 0.880 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.135 21.332 -1.752 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.078 4.078 3 C -0.198 4.198 4 C -0.083 4.083 5 C -0.177 4.177 6 C -0.172 4.172 7 C -0.219 4.219 8 H 0.153 0.847 9 C 0.329 3.671 10 O -0.451 6.451 11 N -0.368 5.368 12 C 0.064 3.936 13 C -0.182 4.182 14 C -0.063 4.063 15 C -0.223 4.223 16 C 0.071 3.929 17 O -0.135 6.135 18 C -0.488 4.488 19 H 0.119 0.881 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.261 4.261 27 C -0.065 4.065 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.245 0.755 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.164 0.836 44 H 0.134 0.866 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.169 21.177 -2.415 26.161 hybrid contribution -1.200 -0.867 0.560 1.583 sum 13.968 20.310 -1.855 24.719 Atomic orbital electron populations 1.21826 0.95827 1.01069 1.00862 1.20644 0.95199 0.96137 0.95824 1.21877 1.01324 0.94773 1.01866 1.21634 1.01056 0.87620 0.97995 1.21520 1.02486 0.99962 0.93693 1.23266 0.89745 1.00840 1.03366 1.22464 0.99741 1.00435 0.99297 0.84653 1.19977 0.79295 0.78762 0.89102 1.90666 1.68255 1.63255 1.22930 1.46152 1.41731 1.36235 1.12642 1.19829 0.92031 0.92520 0.89206 1.19504 0.95982 0.94481 1.08282 1.20873 0.98826 0.91256 0.95324 1.20453 0.93564 1.00827 1.07436 1.20011 0.91829 0.88836 0.92244 1.83966 1.23132 1.35347 1.71033 1.21783 0.84188 1.04420 1.38431 0.88130 1.26581 1.05161 0.94747 0.95472 1.70179 1.39000 1.07866 1.38526 0.84600 0.74106 0.79305 0.78312 1.18930 1.19604 1.17581 1.21243 1.02554 0.92802 1.09488 1.20921 0.92991 0.98379 0.94228 0.93672 0.94009 0.92568 0.91707 0.91897 0.93031 0.91505 0.91033 0.90203 0.92036 0.85715 0.89409 0.75536 0.91485 0.91135 0.83581 0.86597 0.91774 0.86266 0.84516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 8.57 71.98 0.62 -2.25 16 2 C -0.06 -1.11 2.17 -10.79 -0.02 -1.13 16 3 C -0.14 -1.96 8.03 71.98 0.58 -1.38 16 4 C -0.08 -1.27 1.86 -52.18 -0.10 -1.37 16 5 C -0.12 -1.30 9.56 71.98 0.69 -0.61 16 6 C -0.13 -2.01 9.38 30.59 0.29 -1.73 16 7 C -0.20 -3.37 5.82 -11.54 -0.07 -3.44 16 8 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 9 C 0.54 12.42 5.61 87.66 0.49 12.91 16 10 O -0.57 -16.52 12.72 -3.03 -0.04 -16.56 16 11 N -0.72 -15.65 5.55 -466.79 -2.59 -18.24 16 12 C 0.19 4.60 5.80 85.63 0.50 5.09 16 13 C -0.18 -5.26 5.25 -19.83 -0.10 -5.36 16 14 C -0.04 -1.38 9.69 22.25 0.22 -1.17 16 15 C -0.20 -8.19 9.99 22.39 0.22 -7.96 16 16 C 0.12 5.81 6.64 22.58 0.15 5.96 16 17 O -0.23 -13.38 9.76 -22.86 -0.22 -13.61 16 18 C -0.41 -23.42 9.40 67.92 0.64 -22.78 16 19 H 0.10 5.24 5.39 -2.91 -0.02 5.23 16 20 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 21 N -0.92 -55.36 13.67 21.61 0.30 -55.06 16 22 Si 1.02 41.95 29.55 68.60 2.03 43.98 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 25 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 26 C -0.24 -10.00 9.11 22.39 0.20 -9.80 16 27 C -0.05 -1.51 9.69 22.25 0.22 -1.29 16 28 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 1.02 4.91 -2.38 -0.01 1.01 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.56 6.41 -2.39 -0.02 1.54 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.78 6.81 -2.39 -0.02 0.76 16 35 H 0.07 0.60 7.90 -2.39 -0.02 0.58 16 36 H 0.08 0.74 5.73 -2.39 -0.01 0.73 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 38 H 0.12 1.26 8.05 -2.39 -0.02 1.24 16 39 H 0.09 1.59 8.03 -2.39 -0.02 1.57 16 40 H 0.41 7.86 8.46 -92.71 -0.78 7.07 16 41 H 0.07 1.69 8.08 -2.38 -0.02 1.67 16 42 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 43 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 45 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 46 H 0.12 5.07 5.79 -2.91 -0.02 5.06 16 47 H 0.14 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -69.76 379.63 4.64 -65.11 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: 0.19 Total: 31.43 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.98 Total: -37.05 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.29 Total: -73.31 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.26 Total: -30.17 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.76 4.64 -65.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186587643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.301 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds