Wall clock time and date at job start Tue Mar 31 2020 13:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 C 1.53002 * 109.47057 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47308 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00391 * 89.99381 * 5 4 3 7 7 C 1.38234 * 120.00020 * 180.02562 * 6 5 4 8 8 C 1.38234 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99922 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47491 * 89.99868 * 9 8 7 11 11 O 1.21278 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.47575 * 134.49576 * 180.02562 * 12 10 9 14 14 C 1.53952 * 86.11883 * 155.35932 * 13 12 10 15 15 O 1.42896 * 113.73968 * 269.15538 * 14 13 12 16 16 C 1.50696 * 113.74096 * 137.94737 * 14 13 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47581 * 134.48697 * 359.97438 * 12 10 9 25 25 C 1.38228 * 120.00393 * 0.25451 * 8 7 6 26 26 C 1.38236 * 119.99575 * 269.97629 * 5 4 3 27 27 H 1.08990 * 109.47184 * 59.99687 * 1 2 3 28 28 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46816 * 299.99151 * 1 2 3 30 30 H 1.09001 * 109.46816 * 240.00849 * 2 1 3 31 31 H 1.08995 * 109.47609 * 120.00901 * 2 1 3 32 32 H 1.09004 * 109.47095 * 60.00435 * 3 2 1 33 33 H 1.08998 * 109.47757 * 300.00296 * 3 2 1 34 34 H 1.08990 * 109.47581 * 59.99793 * 4 3 2 35 35 H 1.09003 * 109.46811 * 300.00017 * 4 3 2 36 36 H 1.08000 * 119.99887 * 359.97438 * 6 5 4 37 37 H 1.08005 * 119.99884 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46716 * 329.99634 * 9 8 7 39 39 H 1.09001 * 109.47006 * 210.00257 * 9 8 7 40 40 H 1.08992 * 113.77450 * 41.05752 * 13 12 10 41 41 H 1.09008 * 113.87093 * 269.66964 * 13 12 10 42 42 H 0.96697 * 113.99744 * 178.07719 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.76822 * 90.34347 * 24 12 10 45 45 H 1.08998 * 113.77440 * 318.94601 * 24 12 10 46 46 H 1.08001 * 120.00411 * 179.72917 * 25 8 7 47 47 H 1.07997 * 120.00275 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.3031 3.5144 1.1974 7 6 4.7634 4.8178 1.1979 8 6 4.9924 5.4704 0.0010 9 6 5.4936 6.8916 0.0015 10 6 7.0005 6.8929 0.0004 11 8 7.6078 5.8431 -0.0012 12 7 7.6736 8.0607 0.0002 13 6 9.1020 8.4311 -0.0013 14 6 8.6500 9.7567 -0.6406 15 8 8.6349 9.7306 -2.0693 16 6 9.3494 10.9691 -0.0823 17 1 10.0913 10.8548 0.6941 18 6 9.0429 12.2244 -0.5637 19 7 9.6536 13.2825 -0.0768 20 14 7.7602 12.4219 -1.9072 21 1 8.4190 12.3453 -3.2358 22 1 6.7514 11.3382 -1.7917 23 1 7.0903 13.7393 -1.7620 24 6 7.2777 9.4824 0.0003 25 6 4.7561 4.8214 -1.1964 26 6 4.3027 3.5154 -1.1969 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8907 35 1 3.9337 0.9285 0.8891 36 1 4.1230 3.0049 2.1325 37 1 4.9433 5.3266 2.1334 38 1 5.1305 7.4046 0.8922 39 1 5.1292 7.4058 -0.8878 40 1 9.7154 7.8137 -0.6574 41 1 9.5287 8.5470 0.9951 42 1 8.3235 10.5516 -2.4743 43 1 9.4382 14.1655 -0.4157 44 1 7.1660 9.9072 0.9978 45 1 6.4350 9.7040 -0.6546 46 1 4.9308 5.3328 -2.1315 47 1 4.1230 3.0066 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186798397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:37 Heat of formation + Delta-G solvation = -35.758575 kcal Electronic energy + Delta-G solvation = -25623.767767 eV Core-core repulsion = 21965.297439 eV Total energy + Delta-G solvation = -3658.470328 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.04142 -39.32663 -37.63101 -36.06267 -34.49016 -33.25882 -32.57426 -30.89672 -30.55670 -28.90118 -27.00491 -25.56519 -25.17691 -23.58884 -22.72265 -21.47634 -20.79798 -20.11406 -18.58853 -17.47026 -16.57593 -16.47576 -16.14230 -16.11377 -15.38537 -15.27510 -14.81290 -14.69793 -14.34952 -13.73756 -13.65977 -13.44208 -13.34866 -13.30357 -13.06397 -12.87436 -12.61061 -12.46968 -12.23120 -12.14237 -11.79973 -11.58888 -11.49741 -11.40388 -11.24525 -11.00301 -10.98587 -10.77902 -10.77706 -10.62450 -10.16417 -9.76068 -9.33487 -9.04306 -8.86104 -8.74449 -8.44605 -8.03515 -6.44988 -4.51073 1.33554 1.46481 2.96318 2.97441 3.08132 3.11763 3.35823 3.82878 3.99758 4.45803 4.58736 4.62053 4.73885 4.80003 4.80613 4.94167 4.97925 5.03062 5.04126 5.14717 5.31421 5.38412 5.40467 5.45769 5.51750 5.52154 5.57385 5.61347 5.68047 5.71214 5.81451 5.93268 6.00004 6.02088 6.04404 6.08104 6.11371 6.23697 6.33548 6.40247 6.47703 6.57993 6.60844 6.66459 7.04173 7.17519 7.99497 8.28655 8.47566 8.58946 8.63162 9.12468 10.67230 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.002204 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.116048 B =12699.406458 C =12976.004990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.079 4.079 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.103 4.103 8 C -0.060 4.060 9 C -0.099 4.099 10 C 0.532 3.468 11 O -0.551 6.551 12 N -0.636 5.636 13 C 0.127 3.873 14 C 0.195 3.805 15 O -0.553 6.553 16 C -0.537 4.537 17 H 0.091 0.909 18 C 0.080 3.920 19 N -0.876 5.876 20 Si 0.860 3.140 21 H -0.267 1.267 22 H -0.257 1.257 23 H -0.284 1.284 24 C 0.062 3.938 25 C -0.102 4.102 26 C -0.117 4.117 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.351 0.649 43 H 0.271 0.729 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.119 0.881 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.690 -18.037 0.451 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.116 4.116 5 C -0.088 4.088 6 C -0.135 4.135 7 C -0.121 4.121 8 C -0.061 4.061 9 C -0.139 4.139 10 C 0.321 3.679 11 O -0.430 6.430 12 N -0.371 5.371 13 C 0.005 3.995 14 C 0.154 3.846 15 O -0.364 6.364 16 C -0.574 4.574 17 H 0.109 0.891 18 C -0.126 4.126 19 N -0.511 5.511 20 Si 0.689 3.311 21 H -0.193 1.193 22 H -0.183 1.183 23 H -0.210 1.210 24 C -0.061 4.061 25 C -0.121 4.121 26 C -0.135 4.135 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.203 0.797 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.137 0.863 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.232 -19.152 0.550 25.112 hybrid contribution -0.840 1.038 -0.752 1.532 sum -17.072 -18.115 -0.201 24.893 Atomic orbital electron populations 1.21777 0.95924 1.01488 1.01867 1.21557 0.95842 0.96926 1.02005 1.21608 0.94480 0.96591 1.02454 1.20593 0.95468 0.92825 1.02750 1.19807 0.99755 0.96010 0.93247 1.20916 1.00497 0.94723 0.97370 1.20953 0.98871 0.94882 0.97386 1.19319 0.98356 0.94827 0.93568 1.20620 0.93205 0.95082 1.05003 1.20020 0.88963 0.82398 0.76518 1.90672 1.70249 1.30636 1.51405 1.50132 1.09909 1.05443 1.71589 1.23277 0.82341 0.93499 1.00370 1.20552 0.90794 0.94500 0.78761 1.86482 1.89205 1.40100 1.20599 1.21237 1.24476 0.88637 1.23077 0.89064 1.25014 0.95541 0.95918 0.96091 1.69858 1.40818 0.98811 1.41627 0.87322 0.82517 0.78356 0.82945 1.19294 1.18269 1.21008 1.24613 1.01655 0.77862 1.01938 1.20978 0.98735 0.94877 0.97465 1.20926 1.00468 0.94665 0.97398 0.92750 0.92868 0.92759 0.92039 0.92038 0.91847 0.91852 0.91161 0.91172 0.86356 0.86307 0.88308 0.88363 0.90687 0.88827 0.79685 0.91880 0.88684 0.91353 0.86284 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.13 -0.80 5.93 -26.73 -0.16 -0.96 16 3 C -0.11 -0.86 5.20 -26.73 -0.14 -0.99 16 4 C -0.08 -0.68 5.34 -27.88 -0.15 -0.83 16 5 C -0.09 -1.00 5.13 -104.63 -0.54 -1.54 16 6 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16 7 C -0.10 -1.37 9.70 -39.58 -0.38 -1.75 16 8 C -0.06 -0.87 4.37 -104.62 -0.46 -1.32 16 9 C -0.10 -1.45 5.58 -29.04 -0.16 -1.61 16 10 C 0.53 10.14 8.05 -10.99 -0.09 10.05 16 11 O -0.55 -12.27 16.76 5.56 0.09 -12.18 16 12 N -0.64 -12.56 3.61 -178.33 -0.64 -13.20 16 13 C 0.13 2.64 8.23 -2.97 -0.02 2.62 16 14 C 0.19 4.37 1.06 -90.86 -0.10 4.27 16 15 O -0.55 -12.85 13.32 -35.23 -0.47 -13.32 16 16 C -0.54 -13.64 9.20 -34.44 -0.32 -13.95 16 17 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 18 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 19 N -0.88 -24.17 13.96 55.43 0.77 -23.40 16 20 Si 0.86 18.50 24.34 -169.99 -4.14 14.36 16 21 H -0.27 -5.64 7.06 56.52 0.40 -5.24 16 22 H -0.26 -5.11 5.28 56.52 0.30 -4.81 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.06 1.21 7.20 -2.99 -0.02 1.18 16 25 C -0.10 -1.40 9.70 -39.58 -0.38 -1.78 16 26 C -0.12 -1.41 9.70 -39.58 -0.38 -1.79 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 38 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.10 1.30 8.08 -51.93 -0.42 0.88 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.82 8.09 -51.92 -0.42 1.40 16 42 H 0.35 7.73 3.31 45.56 0.15 7.88 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 45 H 0.07 1.24 6.98 -51.93 -0.36 0.88 16 46 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -30.39 383.47 -9.49 -39.88 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.47 Total: 10.83 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.42 Total: -8.76 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: 0.13 Total: -36.60 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.38 Total: -25.49 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.14 Total: 14.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.39 -9.49 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186798397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.121 kcal (2) G-P(sol) polarization free energy of solvation -30.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds