Wall clock time and date at job start Tue Mar 31 2020 13:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 C 1.53002 * 109.47057 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47308 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00391 * 89.99381 * 5 4 3 7 7 C 1.38234 * 120.00020 * 180.02562 * 6 5 4 8 8 C 1.38234 * 119.99964 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99922 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47491 * 89.99868 * 9 8 7 11 11 O 1.21278 * 120.00028 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00407 * 179.97438 * 10 9 8 13 13 C 1.47575 * 134.49576 * 180.02562 * 12 10 9 14 14 C 1.53952 * 86.11883 * 155.35932 * 13 12 10 15 15 O 1.42896 * 113.73968 * 269.15538 * 14 13 12 16 16 C 1.50696 * 113.74096 * 137.94737 * 14 13 12 17 17 H 1.07999 * 120.00319 * 0.02562 * 16 14 13 18 18 C 1.37885 * 119.99717 * 179.97438 * 16 14 13 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 14 20 20 Si 1.86798 * 119.99766 * 0.02562 * 18 16 14 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.47581 * 134.48697 * 359.97438 * 12 10 9 25 25 C 1.38228 * 120.00393 * 0.25451 * 8 7 6 26 26 C 1.38236 * 119.99575 * 269.97629 * 5 4 3 27 27 H 1.08990 * 109.47184 * 59.99687 * 1 2 3 28 28 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46816 * 299.99151 * 1 2 3 30 30 H 1.09001 * 109.46816 * 240.00849 * 2 1 3 31 31 H 1.08995 * 109.47609 * 120.00901 * 2 1 3 32 32 H 1.09004 * 109.47095 * 60.00435 * 3 2 1 33 33 H 1.08998 * 109.47757 * 300.00296 * 3 2 1 34 34 H 1.08990 * 109.47581 * 59.99793 * 4 3 2 35 35 H 1.09003 * 109.46811 * 300.00017 * 4 3 2 36 36 H 1.08000 * 119.99887 * 359.97438 * 6 5 4 37 37 H 1.08005 * 119.99884 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.46716 * 329.99634 * 9 8 7 39 39 H 1.09001 * 109.47006 * 210.00257 * 9 8 7 40 40 H 1.08992 * 113.77450 * 41.05752 * 13 12 10 41 41 H 1.09008 * 113.87093 * 269.66964 * 13 12 10 42 42 H 0.96697 * 113.99744 * 178.07719 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.09002 * 113.76822 * 90.34347 * 24 12 10 45 45 H 1.08998 * 113.77440 * 318.94601 * 24 12 10 46 46 H 1.08001 * 120.00411 * 179.72917 * 25 8 7 47 47 H 1.07997 * 120.00275 * 359.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.3031 3.5144 1.1974 7 6 4.7634 4.8178 1.1979 8 6 4.9924 5.4704 0.0010 9 6 5.4936 6.8916 0.0015 10 6 7.0005 6.8929 0.0004 11 8 7.6078 5.8431 -0.0012 12 7 7.6736 8.0607 0.0002 13 6 9.1020 8.4311 -0.0013 14 6 8.6500 9.7567 -0.6406 15 8 8.6349 9.7306 -2.0693 16 6 9.3494 10.9691 -0.0823 17 1 10.0913 10.8548 0.6941 18 6 9.0429 12.2244 -0.5637 19 7 9.6536 13.2825 -0.0768 20 14 7.7602 12.4219 -1.9072 21 1 8.4190 12.3453 -3.2358 22 1 6.7514 11.3382 -1.7917 23 1 7.0903 13.7393 -1.7620 24 6 7.2777 9.4824 0.0003 25 6 4.7561 4.8214 -1.1964 26 6 4.3027 3.5154 -1.1969 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9289 -0.8907 35 1 3.9337 0.9285 0.8891 36 1 4.1230 3.0049 2.1325 37 1 4.9433 5.3266 2.1334 38 1 5.1305 7.4046 0.8922 39 1 5.1292 7.4058 -0.8878 40 1 9.7154 7.8137 -0.6574 41 1 9.5287 8.5470 0.9951 42 1 8.3235 10.5516 -2.4743 43 1 9.4382 14.1655 -0.4157 44 1 7.1660 9.9072 0.9978 45 1 6.4350 9.7040 -0.6546 46 1 4.9308 5.3328 -2.1315 47 1 4.1230 3.0066 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186798397.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:36 Heat of formation + Delta-G solvation = -53.661039 kcal Electronic energy + Delta-G solvation = -25624.544076 eV Core-core repulsion = 21965.297439 eV Total energy + Delta-G solvation = -3659.246637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48515 -40.46297 -39.13836 -36.75892 -36.22825 -34.54548 -34.13960 -31.81861 -31.60539 -30.29427 -28.21992 -27.10562 -26.74539 -24.40479 -23.65015 -22.24481 -21.89665 -21.40109 -20.14054 -19.33367 -18.19737 -18.08433 -17.27230 -17.02544 -16.46886 -16.40395 -15.96665 -15.79885 -15.48007 -15.27537 -14.91795 -14.89864 -14.37751 -14.31047 -14.19106 -14.08584 -13.90817 -13.75784 -13.48890 -12.97392 -12.95634 -12.92970 -12.67155 -12.43503 -12.34939 -12.17205 -11.97776 -11.93826 -11.78474 -11.50109 -11.42993 -11.37887 -11.10690 -10.86001 -10.48485 -9.80127 -9.66328 -9.40699 -8.42066 -6.54724 0.37668 0.52364 1.25803 1.29026 1.41869 1.61444 1.89969 2.18552 2.76669 2.83113 3.24395 3.63893 3.71917 3.84622 3.86289 3.89669 4.08013 4.12795 4.21442 4.27055 4.36573 4.37475 4.43003 4.52008 4.53511 4.61300 4.65811 4.68195 4.75675 4.79510 4.84504 4.84711 4.94163 4.97687 4.98576 5.14575 5.19395 5.21092 5.29774 5.32276 5.39758 5.50615 5.51567 5.68389 5.73644 6.04061 6.13056 6.52835 6.66195 6.79231 7.11135 7.14707 8.73319 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.002204 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.116048 B =12699.406458 C =12976.004990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.076 4.076 5 C -0.088 4.088 6 C -0.125 4.125 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.090 4.090 10 C 0.529 3.471 11 O -0.588 6.588 12 N -0.637 5.637 13 C 0.122 3.878 14 C 0.184 3.816 15 O -0.561 6.561 16 C -0.545 4.545 17 H 0.055 0.945 18 C 0.027 3.973 19 N -0.924 5.924 20 Si 0.920 3.080 21 H -0.260 1.260 22 H -0.225 1.225 23 H -0.282 1.282 24 C 0.078 3.922 25 C -0.119 4.119 26 C -0.125 4.125 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.356 0.644 43 H 0.273 0.727 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.122 0.878 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 -19.414 -0.214 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.146 4.146 4 C -0.114 4.114 5 C -0.088 4.088 6 C -0.142 4.142 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.129 4.129 10 C 0.320 3.680 11 O -0.469 6.469 12 N -0.371 5.371 13 C -0.001 4.001 14 C 0.143 3.857 15 O -0.373 6.373 16 C -0.582 4.582 17 H 0.073 0.927 18 C -0.174 4.174 19 N -0.561 5.561 20 Si 0.744 3.256 21 H -0.185 1.185 22 H -0.149 1.149 23 H -0.208 1.208 24 C -0.045 4.045 25 C -0.137 4.137 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.156 0.844 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.209 0.791 43 H 0.083 0.917 44 H 0.125 0.875 45 H 0.109 0.891 46 H 0.140 0.860 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.009 -20.546 -0.109 27.991 hybrid contribution 0.124 1.389 -0.493 1.479 sum -18.885 -19.156 -0.602 26.906 Atomic orbital electron populations 1.21783 0.95628 1.01925 1.01797 1.21541 0.96092 0.96122 1.02383 1.21549 0.93615 0.97324 1.02104 1.20630 0.96100 0.91158 1.03464 1.20160 0.98632 0.97183 0.92863 1.21223 1.00007 0.94448 0.98556 1.21185 0.99118 0.95650 0.97501 1.19428 0.99698 0.95027 0.94243 1.20632 0.89320 0.96046 1.06877 1.20851 0.90756 0.81305 0.75071 1.90650 1.71467 1.31822 1.52947 1.50140 1.09126 1.06050 1.71820 1.23242 0.83534 0.92851 1.00456 1.20599 0.92989 0.93602 0.78500 1.86477 1.89541 1.40417 1.20859 1.21346 1.24131 0.90340 1.22433 0.92716 1.25851 0.97778 0.95259 0.98532 1.70003 1.42968 0.99502 1.43661 0.86324 0.80387 0.79239 0.79638 1.18546 1.14911 1.20834 1.24450 1.00098 0.77314 1.02620 1.21180 0.99294 0.95722 0.97525 1.21211 1.00129 0.94362 0.98605 0.92862 0.92210 0.92818 0.91704 0.91632 0.92155 0.92265 0.90521 0.90406 0.84377 0.85532 0.85975 0.86683 0.91633 0.88219 0.79137 0.91725 0.87513 0.89065 0.85993 0.84582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.12 -1.31 5.93 30.59 0.18 -1.13 16 3 C -0.11 -1.40 5.20 30.59 0.16 -1.24 16 4 C -0.08 -1.14 5.34 29.85 0.16 -0.98 16 5 C -0.09 -1.84 5.13 -19.87 -0.10 -1.94 16 6 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 7 C -0.12 -2.92 9.70 22.27 0.22 -2.70 16 8 C -0.08 -2.27 4.37 -19.87 -0.09 -2.36 16 9 C -0.09 -2.40 5.58 29.10 0.16 -2.23 16 10 C 0.53 19.38 8.05 87.65 0.71 20.09 16 11 O -0.59 -25.92 16.76 -3.02 -0.05 -25.97 16 12 N -0.64 -24.17 3.61 -840.32 -3.03 -27.20 16 13 C 0.12 5.06 8.23 86.48 0.71 5.77 16 14 C 0.18 8.07 1.06 -10.89 -0.01 8.05 16 15 O -0.56 -25.10 13.32 -148.98 -1.98 -27.09 16 16 C -0.54 -28.08 9.20 25.60 0.24 -27.84 16 17 H 0.05 3.13 8.06 -2.91 -0.02 3.10 16 18 C 0.03 1.39 5.47 84.66 0.46 1.85 16 19 N -0.92 -52.09 13.96 21.45 0.30 -51.79 16 20 Si 0.92 36.89 24.34 68.60 1.67 38.56 16 21 H -0.26 -10.11 7.06 99.48 0.70 -9.41 16 22 H -0.23 -7.82 5.28 99.48 0.53 -7.29 16 23 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 24 C 0.08 2.80 7.20 86.47 0.62 3.43 16 25 C -0.12 -3.09 9.70 22.27 0.22 -2.87 16 26 C -0.13 -2.82 9.70 22.27 0.22 -2.60 16 27 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 1.06 8.09 -2.39 -0.02 1.04 16 35 H 0.08 1.05 8.09 -2.39 -0.02 1.04 16 36 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.12 2.67 8.09 -2.38 -0.02 2.65 16 39 H 0.12 2.69 8.08 -2.39 -0.02 2.67 16 40 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.10 3.95 8.09 -2.38 -0.02 3.93 16 42 H 0.36 14.73 3.31 -74.06 -0.24 14.49 16 43 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 44 H 0.11 3.62 8.09 -2.39 -0.02 3.61 16 45 H 0.09 2.90 6.98 -2.39 -0.02 2.88 16 46 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 47 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.30 383.47 2.20 -64.10 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: 0.51 Total: 39.42 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.78 Total: -10.04 kcal Atomic # 7 Polarization: -76.26 SS G_CDS: -2.73 Total: -78.99 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -2.03 Total: -53.05 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 1.67 Total: 38.56 kcal Total: -66.30 2.20 -64.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186798397.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.441 kcal (2) G-P(sol) polarization free energy of solvation -66.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds