Wall clock time and date at job start Tue Mar 31 2020 12:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 109.47100 * 2 1 4 4 C 1.50703 * 109.47032 * 120.00143 * 2 1 3 5 5 C 1.38235 * 119.99946 * 119.99745 * 4 2 1 6 6 C 1.38234 * 119.99561 * 179.97438 * 5 4 2 7 7 C 1.38232 * 120.00449 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99882 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46955 * 90.00581 * 8 7 6 10 10 C 1.50707 * 109.47017 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 C 1.38231 * 119.99886 * 0.25864 * 7 6 5 26 26 C 1.38234 * 119.99677 * 300.01878 * 4 2 1 27 27 H 1.09004 * 109.47080 * 300.00140 * 1 2 3 28 28 H 1.08997 * 109.47272 * 59.99726 * 1 2 3 29 29 H 1.08996 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46909 * 239.99483 * 2 1 3 31 31 H 1.09005 * 109.46830 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47282 * 300.00268 * 3 2 1 33 33 H 1.09004 * 109.47268 * 59.99975 * 3 2 1 34 34 H 1.07995 * 120.00020 * 0.02562 * 5 4 2 35 35 H 1.08009 * 119.99705 * 180.02562 * 6 5 4 36 36 H 1.09002 * 109.47561 * 329.99993 * 8 7 6 37 37 H 1.09004 * 109.47099 * 209.99986 * 8 7 6 38 38 H 1.08992 * 109.47552 * 59.99932 * 9 8 7 39 39 H 1.08994 * 109.47209 * 299.99398 * 9 8 7 40 40 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 41 41 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 42 42 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 43 43 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 44 44 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 45 45 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 46 46 H 1.08000 * 120.00283 * 179.73083 * 25 7 6 47 47 H 1.07998 * 120.00160 * 0.02562 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.8271 -1.8344 1.1036 6 6 3.2882 -2.4857 2.2323 7 6 2.9543 -2.0135 3.4878 8 6 3.4566 -2.7239 4.7182 9 6 4.8044 -2.1315 5.1347 10 6 5.3065 -2.8415 6.3655 11 8 4.6510 -3.7339 6.8605 12 7 6.4842 -2.4856 6.9155 13 6 7.2618 -2.9453 8.0827 14 6 8.4962 -2.3960 7.3450 15 8 9.1430 -3.3585 6.5099 16 6 9.4563 -1.6535 8.2383 17 1 9.2843 -1.6172 9.3038 18 6 10.5543 -1.0207 7.6953 19 7 10.6263 -0.8275 6.3963 20 14 11.9396 -0.4376 8.8044 21 1 12.9944 0.2072 7.9817 22 1 11.4090 0.5431 9.7853 23 1 12.5164 -1.5989 9.5281 24 6 7.5141 -1.4788 6.5931 25 6 2.1548 -0.8930 3.6147 26 6 1.6981 -0.2384 2.4860 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.0883 -2.2031 0.1227 35 1 3.9095 -3.3637 2.1332 36 1 3.5777 -3.7852 4.5011 37 1 2.7387 -2.5985 5.5288 38 1 4.6833 -1.0703 5.3519 39 1 5.5224 -2.2568 4.3243 40 1 7.2697 -4.0283 8.2063 41 1 7.0285 -2.4137 9.0052 42 1 9.8361 -2.9879 5.9466 43 1 9.8715 -1.0524 5.8300 44 1 7.3539 -0.5157 7.0776 45 1 7.7236 -1.3906 5.5270 46 1 1.8903 -0.5265 4.5956 47 1 1.0766 0.6393 2.5850 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186809655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:31 Heat of formation + Delta-G solvation = -54.032689 kcal Electronic energy + Delta-G solvation = -25792.275245 eV Core-core repulsion = 22133.012492 eV Total energy + Delta-G solvation = -3659.262753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -39.98302 -39.57272 -37.72681 -36.07383 -34.29673 -33.06605 -32.40555 -31.03216 -29.66729 -28.12511 -27.43902 -25.56231 -25.30726 -24.03129 -22.93208 -21.72560 -20.27451 -19.99574 -18.47085 -17.90273 -16.77094 -16.31047 -15.80238 -15.47416 -15.29016 -15.01288 -14.69613 -14.25878 -14.06834 -13.91416 -13.85233 -13.79882 -13.49401 -13.13331 -12.93645 -12.58292 -12.51894 -12.37299 -12.07094 -11.93381 -11.76154 -11.55536 -11.49152 -11.33837 -11.15397 -10.99937 -10.94170 -10.80567 -10.74319 -10.56785 -10.23479 -9.52173 -9.34996 -9.00318 -8.85373 -8.59169 -8.41981 -7.90660 -6.70641 -4.49947 1.22835 1.31997 3.11005 3.29252 3.33101 3.40901 3.51437 3.67915 4.30733 4.40360 4.52238 4.66929 4.81228 4.84545 4.90212 4.91940 5.11487 5.14910 5.19687 5.21445 5.31619 5.33834 5.37689 5.43245 5.52344 5.60139 5.65321 5.67915 5.70303 5.84704 5.90165 5.93723 5.95435 6.04088 6.05821 6.14808 6.21289 6.33023 6.35176 6.37485 6.49882 6.51055 6.60791 6.76724 6.92398 7.63693 8.07201 8.34446 8.42901 8.65085 8.82072 9.20392 10.60877 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018316 B = 0.002440 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.347821 B =11474.308717 C =12394.406204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.085 4.085 5 C -0.116 4.116 6 C -0.113 4.113 7 C -0.081 4.081 8 C -0.063 4.063 9 C -0.126 4.126 10 C 0.528 3.472 11 O -0.564 6.564 12 N -0.634 5.634 13 C 0.122 3.878 14 C 0.216 3.784 15 O -0.566 6.566 16 C -0.617 4.617 17 H 0.065 0.935 18 C 0.037 3.963 19 N -0.898 5.898 20 Si 1.067 2.933 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.070 3.930 25 C -0.114 4.114 26 C -0.113 4.113 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.375 0.625 43 H 0.268 0.732 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.832 3.952 -11.629 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.075 4.075 3 C -0.202 4.202 4 C -0.085 4.085 5 C -0.134 4.134 6 C -0.131 4.131 7 C -0.081 4.081 8 C -0.101 4.101 9 C -0.166 4.166 10 C 0.317 3.683 11 O -0.445 6.445 12 N -0.368 5.368 13 C 0.000 4.000 14 C 0.175 3.825 15 O -0.373 6.373 16 C -0.655 4.655 17 H 0.083 0.917 18 C -0.169 4.169 19 N -0.534 5.534 20 Si 0.893 3.107 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.053 4.053 25 C -0.132 4.132 26 C -0.131 4.131 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.139 0.861 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.287 3.713 -11.188 19.304 hybrid contribution -1.134 -0.170 -0.278 1.180 sum -16.422 3.543 -11.465 20.339 Atomic orbital electron populations 1.21857 0.94441 1.01960 1.01835 1.20118 0.95858 0.96079 0.95441 1.21861 1.01410 0.95075 1.01834 1.19825 0.98157 0.95895 0.94590 1.21026 0.98261 0.95668 0.98463 1.21082 0.99924 1.00155 0.91930 1.19946 0.97401 0.95886 0.94856 1.20330 0.95607 0.99604 0.94579 1.21537 0.97693 1.00905 0.96497 1.20258 0.79033 0.83558 0.85406 1.90635 1.56358 1.32468 1.64990 1.50205 1.18794 1.37711 1.30064 1.23278 0.87179 1.00224 0.89321 1.20149 0.89018 0.85519 0.87820 1.86252 1.54786 1.37948 1.58345 1.22227 1.11812 1.36087 0.95374 0.91676 1.25985 0.99927 0.93054 0.97959 1.70949 1.33825 1.44029 1.04600 0.83584 0.75671 0.76601 0.74826 1.20554 1.21115 1.20992 1.24469 0.86164 0.93982 1.00709 1.21063 0.98038 0.95463 0.98624 1.20920 1.00433 0.99867 0.91915 0.92468 0.92484 0.92577 0.90604 0.92416 0.92484 0.92440 0.86283 0.86006 0.90264 0.90339 0.89297 0.89178 0.91071 0.89409 0.77629 0.92026 0.89526 0.91669 0.86099 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.01 37.16 0.33 -0.65 16 2 C -0.06 -0.44 3.09 -91.77 -0.28 -0.73 16 3 C -0.14 -1.06 9.01 37.16 0.33 -0.72 16 4 C -0.08 -0.84 4.78 -104.62 -0.50 -1.34 16 5 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16 6 C -0.11 -1.30 9.70 -39.58 -0.38 -1.68 16 7 C -0.08 -0.99 5.13 -104.63 -0.54 -1.52 16 8 C -0.06 -0.87 4.63 -27.89 -0.13 -0.99 16 9 C -0.13 -1.92 5.43 -27.88 -0.15 -2.07 16 10 C 0.53 10.40 8.06 -10.98 -0.09 10.31 16 11 O -0.56 -12.64 16.71 5.56 0.09 -12.55 16 12 N -0.63 -13.17 3.61 -178.25 -0.64 -13.81 16 13 C 0.12 2.66 8.22 -2.97 -0.02 2.64 16 14 C 0.22 5.08 1.08 -90.83 -0.10 4.98 16 15 O -0.57 -13.93 13.45 -35.23 -0.47 -14.40 16 16 C -0.62 -15.57 8.56 -34.44 -0.29 -15.86 16 17 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 18 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 19 N -0.90 -23.44 12.80 55.43 0.71 -22.73 16 20 Si 1.07 22.63 29.93 -169.99 -5.09 17.55 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 C 0.07 1.46 7.05 -2.95 -0.02 1.44 16 25 C -0.11 -1.28 9.70 -39.58 -0.38 -1.66 16 26 C -0.11 -1.15 8.71 -39.58 -0.34 -1.50 16 27 H 0.06 0.39 7.39 -51.93 -0.38 0.01 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 7.88 -51.93 -0.41 0.14 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.42 7.39 -51.93 -0.38 0.03 16 34 H 0.12 1.02 7.95 -52.49 -0.42 0.61 16 35 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 36 H 0.08 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.79 8.09 -51.93 -0.42 1.37 16 42 H 0.37 8.98 6.95 45.56 0.32 9.29 16 43 H 0.27 6.78 5.53 -40.82 -0.23 6.56 16 44 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 45 H 0.06 1.31 7.80 -51.92 -0.41 0.90 16 46 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.12 1.00 7.10 -52.49 -0.37 0.63 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -29.27 386.14 -9.60 -38.87 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -6.97 Total: 11.39 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.05 Total: -10.14 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.07 Total: -36.54 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.38 Total: -26.95 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.09 Total: 17.55 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.27 -9.60 -38.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186809655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.162 kcal (2) G-P(sol) polarization free energy of solvation -29.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds