Wall clock time and date at job start Tue Mar 31 2020 13:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.53006 * 109.46724 * 186.11154 * 3 2 1 5 5 C 1.53003 * 109.47085 * 303.13833 * 4 3 2 6 6 C 1.50693 * 109.46965 * 306.10769 * 3 2 1 7 7 O 1.21288 * 119.99937 * 122.24872 * 6 3 2 8 8 N 1.34773 * 120.00401 * 302.25048 * 6 3 2 9 9 C 1.47588 * 134.49303 * 185.47134 * 8 6 3 10 10 C 1.53951 * 86.11726 * 155.35966 * 9 8 6 11 11 O 1.42897 * 113.73760 * 269.15508 * 10 9 8 12 12 C 1.50698 * 113.73891 * 137.95275 * 10 9 8 13 13 H 1.07992 * 120.00302 * 2.91190 * 12 10 9 14 14 C 1.37876 * 119.99361 * 182.91594 * 12 10 9 15 15 N 1.31509 * 120.00572 * 16.45295 * 14 12 10 16 16 Si 1.86798 * 119.99892 * 196.44940 * 14 12 10 17 17 H 1.48498 * 109.47427 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47264 * 300.00317 * 16 14 12 19 19 H 1.48505 * 109.46979 * 60.00148 * 16 14 12 20 20 C 1.47579 * 134.49277 * 5.47062 * 8 6 3 21 21 C 1.50695 * 109.47130 * 66.11431 * 3 2 1 22 22 C 1.38237 * 119.99649 * 186.87304 * 21 3 2 23 23 C 1.38233 * 119.99663 * 179.76357 * 22 21 3 24 24 C 1.38242 * 120.00027 * 0.50625 * 23 22 21 25 25 C 1.38231 * 120.00111 * 359.74487 * 24 23 22 26 26 C 1.38232 * 120.00405 * 7.13890 * 21 3 2 27 27 H 1.08999 * 109.47004 * 307.23766 * 1 2 3 28 28 H 1.09004 * 109.46817 * 67.23325 * 1 2 3 29 29 H 1.09001 * 109.47388 * 187.23490 * 1 2 3 30 30 H 1.08996 * 109.47079 * 240.00282 * 2 1 3 31 31 H 1.08997 * 109.47116 * 119.99878 * 2 1 3 32 32 H 1.09000 * 109.46793 * 63.13468 * 4 3 2 33 33 H 1.09001 * 109.46853 * 183.13865 * 4 3 2 34 34 H 1.08997 * 109.46986 * 185.77838 * 5 4 3 35 35 H 1.08998 * 109.47079 * 305.77751 * 5 4 3 36 36 H 1.08997 * 109.47062 * 65.77560 * 5 4 3 37 37 H 1.08994 * 113.77070 * 41.05549 * 9 8 6 38 38 H 1.09006 * 113.86905 * 269.67361 * 9 8 6 39 39 H 0.96703 * 113.99625 * 172.63705 * 11 10 9 40 40 H 0.97002 * 119.99961 * 355.18711 * 15 14 12 41 41 H 1.08997 * 113.77012 * 90.33794 * 20 8 6 42 42 H 1.09000 * 113.76734 * 318.93840 * 20 8 6 43 43 H 1.07998 * 120.00066 * 359.97438 * 22 21 3 44 44 H 1.08003 * 120.00013 * 180.23043 * 23 22 21 45 45 H 1.07998 * 119.99972 * 179.72479 * 24 23 22 46 46 H 1.07991 * 120.00032 * 179.97438 * 25 24 23 47 47 H 1.08004 * 119.99909 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5623 1.4452 -0.1536 5 6 4.1895 0.6152 0.9683 6 6 1.4180 2.1952 -1.1478 7 8 0.7710 3.1988 -0.9353 8 7 1.5807 1.7531 -2.4106 9 6 1.2162 2.2723 -3.7432 10 6 2.3786 1.4168 -4.2790 11 8 3.6273 2.1096 -4.3288 12 6 2.0576 0.6912 -5.5602 13 1 1.1005 0.8377 -6.0385 14 6 2.9859 -0.1596 -6.1217 15 7 3.9994 -0.5928 -5.4044 16 14 2.8040 -0.6971 -7.9014 17 1 3.9226 -1.6050 -8.2612 18 1 1.5130 -1.4106 -8.0735 19 1 2.8312 0.4967 -8.7843 20 6 2.1948 0.5556 -3.0161 21 6 1.6650 2.1079 1.2991 22 6 1.8943 3.4598 1.4746 23 6 1.5459 4.0711 2.6644 24 6 0.9778 3.3285 3.6827 25 6 0.7533 1.9756 3.5091 26 6 1.0969 1.3654 2.3172 27 1 -0.3633 0.6219 0.8182 28 1 -0.3633 0.3977 -0.9476 29 1 -0.3634 -1.0195 0.1294 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8309 1.0143 -1.1181 33 1 3.9313 2.4694 -0.0977 34 1 5.2751 0.7007 0.9201 35 1 3.8386 0.9832 1.9323 36 1 3.9018 -0.4296 0.8516 37 1 1.3726 3.3452 -3.8546 38 1 0.2352 1.9472 -4.0900 39 1 4.3803 1.5472 -4.5568 40 1 4.1333 -0.2599 -4.5032 41 1 1.5012 -0.2749 -3.1478 42 1 3.1326 0.2580 -2.5471 43 1 2.3425 4.0390 0.6809 44 1 1.7216 5.1281 2.8002 45 1 0.7096 3.8052 4.6139 46 1 0.3098 1.3954 4.3046 47 1 0.9220 0.3082 2.1819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186820868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:30 Heat of formation + Delta-G solvation = -28.898711 kcal Electronic energy + Delta-G solvation = -28392.161065 eV Core-core repulsion = 24733.988202 eV Total energy + Delta-G solvation = -3658.172862 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85658 -39.11722 -37.48107 -35.98694 -34.33255 -32.38515 -32.16101 -30.63357 -30.21308 -28.84833 -26.76134 -25.58580 -24.71450 -23.26496 -22.42711 -21.99039 -21.09898 -19.56799 -18.52566 -17.92714 -16.88916 -16.09198 -15.74553 -15.31571 -15.06759 -14.89208 -14.47095 -14.27567 -14.16322 -13.98825 -13.91003 -13.25454 -13.20964 -12.77988 -12.55153 -12.52981 -12.26333 -12.04414 -11.98477 -11.95258 -11.70258 -11.48808 -11.30943 -11.16592 -11.10827 -10.95337 -10.81434 -10.59598 -10.40675 -10.26601 -10.24257 -9.32900 -9.30637 -8.88489 -8.72007 -8.56031 -8.34832 -7.87798 -6.73880 -4.49941 1.45368 1.55045 3.11824 3.27975 3.32841 3.41736 3.50296 3.94660 4.28076 4.56946 4.66497 4.80268 4.93744 4.98514 5.06681 5.10473 5.21501 5.26408 5.32818 5.38712 5.45856 5.52874 5.62111 5.67180 5.70037 5.82204 5.87471 5.97077 5.98821 6.04894 6.07342 6.12727 6.16706 6.17743 6.25344 6.30034 6.33486 6.38124 6.47410 6.51676 6.59608 6.63806 6.75634 6.80042 7.11767 7.61870 8.07176 8.35436 8.43089 8.68324 8.79513 9.20199 10.59035 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.003734 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.945027 B = 7496.983676 C = 7626.023122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.117 4.117 3 C -0.030 4.030 4 C -0.112 4.112 5 C -0.149 4.149 6 C 0.544 3.456 7 O -0.554 6.554 8 N -0.629 5.629 9 C 0.122 3.878 10 C 0.217 3.783 11 O -0.566 6.566 12 C -0.620 4.620 13 H 0.065 0.935 14 C 0.036 3.964 15 N -0.893 5.893 16 Si 1.070 2.930 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.071 3.929 21 C -0.050 4.050 22 C -0.080 4.080 23 C -0.126 4.126 24 C -0.126 4.126 25 C -0.130 4.130 26 C -0.118 4.118 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.373 0.627 40 H 0.266 0.734 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.053 0.255 13.980 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.155 4.155 3 C -0.033 4.033 4 C -0.150 4.150 5 C -0.206 4.206 6 C 0.333 3.667 7 O -0.433 6.433 8 N -0.362 5.362 9 C 0.000 4.000 10 C 0.176 3.824 11 O -0.373 6.373 12 C -0.658 4.658 13 H 0.083 0.917 14 C -0.170 4.170 15 N -0.530 5.530 16 Si 0.896 3.104 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.052 4.052 21 C -0.051 4.051 22 C -0.098 4.098 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.148 4.148 26 C -0.136 4.136 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.223 0.777 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.131 0.397 13.298 13.473 hybrid contribution -0.474 0.522 1.038 1.255 sum -2.605 0.919 14.336 14.600 Atomic orbital electron populations 1.22030 0.95390 1.01759 1.02865 1.21732 0.96497 0.93977 1.03279 1.19727 0.96700 0.95692 0.91161 1.21628 0.91438 1.01444 1.00466 1.21801 1.00363 1.00009 0.98470 1.19838 0.79870 0.84803 0.82234 1.90651 1.41767 1.27116 1.83795 1.50069 1.57603 1.24525 1.04039 1.23288 0.98630 0.99701 0.78336 1.20144 0.82284 0.88115 0.91872 1.86265 1.17848 1.40332 1.92875 1.22219 1.04627 1.30173 1.08776 0.91681 1.25972 0.92943 0.92884 1.05238 1.71002 1.32320 1.38594 1.11082 0.83519 0.76323 0.76521 0.73987 1.20578 1.21162 1.20988 1.24514 0.96704 0.89716 0.94216 1.19302 0.98310 0.93807 0.93645 1.20984 0.98147 0.94129 0.96509 1.21084 0.99931 0.99635 0.93712 1.21071 1.00068 0.94392 0.98841 1.21030 1.01317 0.95018 0.97405 1.21207 0.99004 1.00247 0.93117 0.91666 0.92603 0.92404 0.90467 0.90543 0.90253 0.91563 0.92528 0.92455 0.92358 0.91190 0.89591 0.77728 0.92170 0.89672 0.91472 0.86287 0.86444 0.86607 0.86454 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 8.71 37.16 0.32 -1.96 16 2 C -0.12 -1.62 3.61 -26.73 -0.10 -1.72 16 3 C -0.03 -0.46 0.20 -156.81 -0.03 -0.50 16 4 C -0.11 -1.66 4.83 -26.73 -0.13 -1.79 16 5 C -0.15 -1.80 9.18 37.16 0.34 -1.46 16 6 C 0.54 10.62 5.11 -10.99 -0.06 10.56 16 7 O -0.55 -12.38 15.21 5.55 0.08 -12.29 16 8 N -0.63 -12.65 3.52 -178.27 -0.63 -13.28 16 9 C 0.12 2.63 8.23 -2.97 -0.02 2.60 16 10 C 0.22 4.96 1.08 -90.84 -0.10 4.86 16 11 O -0.57 -13.45 13.45 -35.23 -0.47 -13.92 16 12 C -0.62 -15.41 8.56 -34.44 -0.29 -15.70 16 13 H 0.06 1.62 7.87 -52.49 -0.41 1.20 16 14 C 0.04 0.89 5.21 -17.82 -0.09 0.80 16 15 N -0.89 -22.85 13.05 55.43 0.72 -22.13 16 16 Si 1.07 22.45 29.93 -169.99 -5.09 17.36 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 C 0.07 1.44 4.89 -2.97 -0.01 1.42 16 21 C -0.05 -0.75 3.02 -104.63 -0.32 -1.07 16 22 C -0.08 -1.24 7.81 -39.58 -0.31 -1.55 16 23 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 24 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 25 C -0.13 -1.53 10.05 -39.59 -0.40 -1.92 16 26 C -0.12 -1.53 7.20 -39.58 -0.29 -1.82 16 27 H 0.06 0.92 5.50 -51.93 -0.29 0.63 16 28 H 0.05 0.91 7.35 -51.93 -0.38 0.53 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.13 6.01 -51.93 -0.31 0.81 16 31 H 0.08 0.89 5.49 -51.93 -0.28 0.61 16 32 H 0.08 1.28 5.50 -51.93 -0.29 0.99 16 33 H 0.07 1.02 7.73 -51.93 -0.40 0.62 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.68 6.97 -51.93 -0.36 0.32 16 36 H 0.06 0.65 6.86 -51.93 -0.36 0.30 16 37 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 39 H 0.37 8.66 6.72 45.56 0.31 8.96 16 40 H 0.27 6.58 5.36 -40.82 -0.22 6.36 16 41 H 0.09 1.73 8.08 -51.93 -0.42 1.31 16 42 H 0.07 1.30 5.59 -51.93 -0.29 1.01 16 43 H 0.12 2.00 7.34 -52.49 -0.39 1.62 16 44 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.13 1.46 5.05 -52.48 -0.27 1.20 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -28.46 358.37 -8.36 -36.82 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: -6.11 Total: 15.23 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -2.28 Total: -13.19 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.10 Total: -35.41 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.39 Total: -26.22 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.09 Total: 17.36 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.46 -8.36 -36.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.926 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds