Wall clock time and date at job start Tue Mar 31 2020 13:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46974 * 2 1 4 4 C 1.53006 * 109.46724 * 186.11154 * 3 2 1 5 5 C 1.53003 * 109.47085 * 303.13833 * 4 3 2 6 6 C 1.50693 * 109.46965 * 306.10769 * 3 2 1 7 7 O 1.21288 * 119.99937 * 122.24872 * 6 3 2 8 8 N 1.34773 * 120.00401 * 302.25048 * 6 3 2 9 9 C 1.47588 * 134.49303 * 185.47134 * 8 6 3 10 10 C 1.53951 * 86.11726 * 155.35966 * 9 8 6 11 11 O 1.42897 * 113.73760 * 269.15508 * 10 9 8 12 12 C 1.50698 * 113.73891 * 137.95275 * 10 9 8 13 13 H 1.07992 * 120.00302 * 2.91190 * 12 10 9 14 14 C 1.37876 * 119.99361 * 182.91594 * 12 10 9 15 15 N 1.31509 * 120.00572 * 16.45295 * 14 12 10 16 16 Si 1.86798 * 119.99892 * 196.44940 * 14 12 10 17 17 H 1.48498 * 109.47427 * 180.02562 * 16 14 12 18 18 H 1.48501 * 109.47264 * 300.00317 * 16 14 12 19 19 H 1.48505 * 109.46979 * 60.00148 * 16 14 12 20 20 C 1.47579 * 134.49277 * 5.47062 * 8 6 3 21 21 C 1.50695 * 109.47130 * 66.11431 * 3 2 1 22 22 C 1.38237 * 119.99649 * 186.87304 * 21 3 2 23 23 C 1.38233 * 119.99663 * 179.76357 * 22 21 3 24 24 C 1.38242 * 120.00027 * 0.50625 * 23 22 21 25 25 C 1.38231 * 120.00111 * 359.74487 * 24 23 22 26 26 C 1.38232 * 120.00405 * 7.13890 * 21 3 2 27 27 H 1.08999 * 109.47004 * 307.23766 * 1 2 3 28 28 H 1.09004 * 109.46817 * 67.23325 * 1 2 3 29 29 H 1.09001 * 109.47388 * 187.23490 * 1 2 3 30 30 H 1.08996 * 109.47079 * 240.00282 * 2 1 3 31 31 H 1.08997 * 109.47116 * 119.99878 * 2 1 3 32 32 H 1.09000 * 109.46793 * 63.13468 * 4 3 2 33 33 H 1.09001 * 109.46853 * 183.13865 * 4 3 2 34 34 H 1.08997 * 109.46986 * 185.77838 * 5 4 3 35 35 H 1.08998 * 109.47079 * 305.77751 * 5 4 3 36 36 H 1.08997 * 109.47062 * 65.77560 * 5 4 3 37 37 H 1.08994 * 113.77070 * 41.05549 * 9 8 6 38 38 H 1.09006 * 113.86905 * 269.67361 * 9 8 6 39 39 H 0.96703 * 113.99625 * 172.63705 * 11 10 9 40 40 H 0.97002 * 119.99961 * 355.18711 * 15 14 12 41 41 H 1.08997 * 113.77012 * 90.33794 * 20 8 6 42 42 H 1.09000 * 113.76734 * 318.93840 * 20 8 6 43 43 H 1.07998 * 120.00066 * 359.97438 * 22 21 3 44 44 H 1.08003 * 120.00013 * 180.23043 * 23 22 21 45 45 H 1.07998 * 119.99972 * 179.72479 * 24 23 22 46 46 H 1.07991 * 120.00032 * 179.97438 * 25 24 23 47 47 H 1.08004 * 119.99909 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5623 1.4452 -0.1536 5 6 4.1895 0.6152 0.9683 6 6 1.4180 2.1952 -1.1478 7 8 0.7710 3.1988 -0.9353 8 7 1.5807 1.7531 -2.4106 9 6 1.2162 2.2723 -3.7432 10 6 2.3786 1.4168 -4.2790 11 8 3.6273 2.1096 -4.3288 12 6 2.0576 0.6912 -5.5602 13 1 1.1005 0.8377 -6.0385 14 6 2.9859 -0.1596 -6.1217 15 7 3.9994 -0.5928 -5.4044 16 14 2.8040 -0.6971 -7.9014 17 1 3.9226 -1.6050 -8.2612 18 1 1.5130 -1.4106 -8.0735 19 1 2.8312 0.4967 -8.7843 20 6 2.1948 0.5556 -3.0161 21 6 1.6650 2.1079 1.2991 22 6 1.8943 3.4598 1.4746 23 6 1.5459 4.0711 2.6644 24 6 0.9778 3.3285 3.6827 25 6 0.7533 1.9756 3.5091 26 6 1.0969 1.3654 2.3172 27 1 -0.3633 0.6219 0.8182 28 1 -0.3633 0.3977 -0.9476 29 1 -0.3634 -1.0195 0.1294 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8309 1.0143 -1.1181 33 1 3.9313 2.4694 -0.0977 34 1 5.2751 0.7007 0.9201 35 1 3.8386 0.9832 1.9323 36 1 3.9018 -0.4296 0.8516 37 1 1.3726 3.3452 -3.8546 38 1 0.2352 1.9472 -4.0900 39 1 4.3803 1.5472 -4.5568 40 1 4.1333 -0.2599 -4.5032 41 1 1.5012 -0.2749 -3.1478 42 1 3.1326 0.2580 -2.5471 43 1 2.3425 4.0390 0.6809 44 1 1.7216 5.1281 2.8002 45 1 0.7096 3.8052 4.6139 46 1 0.3098 1.3954 4.3046 47 1 0.9220 0.3082 2.1819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186820868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:28 Heat of formation + Delta-G solvation = -45.488793 kcal Electronic energy + Delta-G solvation = -28392.880465 eV Core-core repulsion = 24733.988202 eV Total energy + Delta-G solvation = -3658.892262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22396 -40.57839 -38.96091 -37.26241 -36.14379 -34.30710 -33.24831 -31.65044 -31.28433 -30.43578 -28.09633 -27.30480 -26.44832 -24.37387 -23.49021 -23.02462 -22.64375 -21.07060 -20.22898 -19.54215 -18.08926 -17.65564 -17.12891 -16.81696 -16.49552 -16.28203 -15.91808 -15.66791 -15.50081 -15.36021 -15.08045 -14.77817 -14.49329 -14.21854 -14.06472 -13.73166 -13.61337 -13.44690 -13.32662 -13.08899 -13.02928 -12.96766 -12.75337 -12.60804 -12.40994 -12.23917 -12.18500 -11.90883 -11.90853 -11.57165 -11.41415 -11.09684 -10.94241 -10.68888 -10.13223 -9.74509 -9.63471 -9.57314 -8.69778 -6.47573 0.43547 0.53914 1.56749 1.60131 1.65247 1.85408 1.86104 2.53640 2.87681 2.92941 3.29065 3.41281 3.55415 3.75527 3.81605 3.90277 4.11744 4.15674 4.16454 4.26063 4.28416 4.30740 4.36834 4.41772 4.44596 4.57603 4.60220 4.62229 4.66654 4.76052 4.83434 4.88294 4.92840 4.96129 5.01245 5.06591 5.07514 5.16214 5.19762 5.27070 5.33177 5.59524 5.63429 5.72799 5.74119 6.09105 6.13535 6.46281 6.74937 6.91674 7.09002 7.28009 8.64284 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024752 B = 0.003734 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.945027 B = 7496.983676 C = 7626.023122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C -0.022 4.022 4 C -0.110 4.110 5 C -0.140 4.140 6 C 0.538 3.462 7 O -0.587 6.587 8 N -0.629 5.629 9 C 0.118 3.882 10 C 0.202 3.798 11 O -0.576 6.576 12 C -0.637 4.637 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.908 5.908 16 Si 1.111 2.889 17 H -0.282 1.282 18 H -0.272 1.272 19 H -0.279 1.279 20 C 0.093 3.907 21 C -0.067 4.067 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.120 4.120 27 H 0.065 0.935 28 H 0.024 0.976 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.374 0.626 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.130 0.870 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.559 -1.414 16.172 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.152 4.152 3 C -0.025 4.025 4 C -0.148 4.148 5 C -0.197 4.197 6 C 0.329 3.671 7 O -0.468 6.468 8 N -0.362 5.362 9 C -0.005 4.005 10 C 0.161 3.839 11 O -0.383 6.383 12 C -0.675 4.675 13 H 0.077 0.923 14 C -0.202 4.202 15 N -0.545 5.545 16 Si 0.934 3.066 17 H -0.208 1.208 18 H -0.197 1.197 19 H -0.204 1.204 20 C -0.030 4.030 21 C -0.067 4.067 22 C -0.126 4.126 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.138 4.138 27 H 0.083 0.917 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.223 0.777 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.148 0.852 45 H 0.165 0.835 46 H 0.169 0.831 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.640 -1.271 15.508 15.782 hybrid contribution -0.346 1.149 0.401 1.265 sum -2.985 -0.122 15.909 16.187 Atomic orbital electron populations 1.22005 0.95359 1.03141 1.01115 1.21775 0.96452 0.92606 1.04351 1.19713 0.96658 0.96321 0.89783 1.21598 0.91289 1.01006 1.00906 1.21746 1.00688 1.00078 0.97228 1.20696 0.79179 0.84525 0.82687 1.90622 1.43284 1.28648 1.84261 1.50067 1.57689 1.24358 1.04056 1.23261 0.98691 0.98894 0.79614 1.20307 0.82136 0.88927 0.92530 1.86251 1.18257 1.40841 1.92966 1.22434 1.04649 1.30567 1.09818 0.92295 1.27042 0.92464 0.92843 1.07839 1.71063 1.32890 1.39284 1.11297 0.82961 0.76740 0.76433 0.70468 1.20757 1.19680 1.20447 1.24207 0.96960 0.89186 0.92621 1.19306 0.99769 0.93785 0.93856 1.20932 0.99934 0.94706 0.96996 1.21311 0.99972 1.00606 0.93407 1.21458 0.98636 0.94637 0.99332 1.21464 1.00007 0.95222 0.97601 1.21430 0.98337 1.01052 0.92963 0.91650 0.95715 0.89774 0.91305 0.87404 0.91920 0.93232 0.91642 0.91938 0.90909 0.92392 0.88778 0.77719 0.92471 0.89611 0.90634 0.89234 0.85201 0.83532 0.83077 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.18 8.71 71.98 0.63 -3.55 16 2 C -0.11 -2.97 3.61 30.60 0.11 -2.86 16 3 C -0.02 -0.68 0.20 -53.67 -0.01 -0.69 16 4 C -0.11 -3.28 4.83 30.60 0.15 -3.13 16 5 C -0.14 -3.13 9.18 71.98 0.66 -2.47 16 6 C 0.54 21.66 5.11 87.66 0.45 22.11 16 7 O -0.59 -27.35 15.21 -3.05 -0.05 -27.40 16 8 N -0.63 -26.07 3.52 -840.14 -2.96 -29.02 16 9 C 0.12 5.25 8.23 86.48 0.71 5.96 16 10 C 0.20 9.44 1.08 -10.88 -0.01 9.43 16 11 O -0.58 -28.19 13.45 -148.98 -2.00 -30.19 16 12 C -0.64 -32.01 8.56 25.60 0.22 -31.79 16 13 H 0.06 2.96 7.87 -2.91 -0.02 2.94 16 14 C 0.00 0.03 5.21 84.66 0.44 0.47 16 15 N -0.91 -46.46 13.05 21.45 0.28 -46.18 16 16 Si 1.11 44.84 29.93 68.60 2.05 46.89 16 17 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 18 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 19 H -0.28 -10.93 7.11 99.48 0.71 -10.23 16 20 C 0.09 3.80 4.89 86.48 0.42 4.22 16 21 C -0.07 -1.96 3.02 -19.87 -0.06 -2.02 16 22 C -0.11 -3.40 7.81 22.27 0.17 -3.22 16 23 C -0.14 -3.46 10.05 22.27 0.22 -3.24 16 24 C -0.12 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.13 -2.47 10.05 22.27 0.22 -2.24 16 26 C -0.12 -2.78 7.20 22.27 0.16 -2.62 16 27 H 0.06 1.71 5.50 -2.39 -0.01 1.70 16 28 H 0.02 0.78 7.35 -2.39 -0.02 0.77 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.91 6.01 -2.39 -0.01 1.89 16 31 H 0.11 2.13 5.49 -2.39 -0.01 2.11 16 32 H 0.06 2.05 5.50 -2.39 -0.01 2.03 16 33 H 0.05 1.60 7.73 -2.39 -0.02 1.58 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.34 6.97 -2.39 -0.02 1.33 16 36 H 0.07 1.41 6.86 -2.39 -0.02 1.40 16 37 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.09 3.97 8.09 -2.38 -0.02 3.95 16 39 H 0.37 17.83 6.72 -74.06 -0.50 17.33 16 40 H 0.26 13.14 5.36 -92.71 -0.50 12.65 16 41 H 0.09 3.50 8.08 -2.39 -0.02 3.48 16 42 H 0.08 2.96 5.59 -2.39 -0.01 2.95 16 43 H 0.09 3.26 7.34 -2.91 -0.02 3.24 16 44 H 0.13 2.85 8.06 -2.91 -0.02 2.82 16 45 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 46 H 0.15 1.97 8.06 -2.92 -0.02 1.94 16 47 H 0.15 2.76 5.05 -2.91 -0.01 2.75 16 Total: -1.00 -62.52 358.37 2.80 -59.72 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: 0.76 Total: 44.12 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.71 Total: -17.94 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.68 Total: -75.20 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -2.05 Total: -57.59 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.05 Total: 46.89 kcal Total: -62.52 2.80 -59.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186820868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.232 kcal (2) G-P(sol) polarization free energy of solvation -62.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds