Wall clock time and date at job start Tue Mar 31 2020 12:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46816 * 2 1 4 4 C 1.53002 * 109.50215 * 64.79890 * 3 2 1 5 5 O 1.42902 * 109.46956 * 56.38884 * 4 3 2 6 6 C 1.53048 * 109.49951 * 304.73085 * 3 2 1 7 7 C 1.53033 * 109.53854 * 301.41709 * 6 3 2 8 8 C 1.53197 * 109.31220 * 298.63411 * 7 6 3 9 9 N 1.46920 * 108.77538 * 54.63416 * 8 7 6 10 10 C 1.34778 * 120.63038 * 126.37276 * 9 8 7 11 11 O 1.21544 * 120.00220 * 186.47097 * 10 9 8 12 12 C 1.47884 * 119.99941 * 6.46670 * 10 9 8 13 13 C 1.39923 * 120.02622 * 28.16031 * 12 10 9 14 14 C 1.38322 * 120.36036 * 180.23546 * 13 12 10 15 15 C 1.37760 * 120.41237 * 359.49157 * 14 13 12 16 16 C 1.40746 * 120.03583 * 0.23825 * 15 14 13 17 17 C 1.41444 * 120.17583 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00066 * 151.11513 * 17 16 15 19 19 C 1.39936 * 119.99604 * 331.11191 * 17 16 15 20 20 N 1.30827 * 119.99751 * 163.62591 * 19 17 16 21 21 Si 1.86803 * 120.00148 * 343.62746 * 19 17 16 22 22 H 1.48496 * 109.47010 * 95.21040 * 21 19 17 23 23 H 1.48504 * 109.46666 * 215.20908 * 21 19 17 24 24 H 1.48500 * 109.47080 * 335.20618 * 21 19 17 25 25 C 1.38993 * 120.02639 * 207.86843 * 12 10 9 26 26 C 1.46925 * 118.74271 * 306.64177 * 9 8 7 27 27 H 1.08997 * 109.47178 * 300.64382 * 1 2 3 28 28 H 1.09002 * 109.47403 * 60.64567 * 1 2 3 29 29 H 1.09001 * 109.47040 * 180.64481 * 1 2 3 30 30 H 1.09001 * 109.47006 * 239.99998 * 2 1 3 31 31 H 1.09002 * 109.46960 * 120.00284 * 2 1 3 32 32 H 1.09000 * 109.47579 * 176.39233 * 4 3 2 33 33 H 1.09000 * 109.46963 * 296.39449 * 4 3 2 34 34 H 0.96695 * 113.99727 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46171 * 181.39435 * 6 3 2 36 36 H 1.09001 * 109.44645 * 61.42910 * 6 3 2 37 37 H 1.08998 * 109.49638 * 178.68139 * 7 6 3 38 38 H 1.08998 * 109.52229 * 58.59800 * 7 6 3 39 39 H 1.09002 * 109.58121 * 294.84657 * 8 7 6 40 40 H 1.09004 * 109.70238 * 174.49188 * 8 7 6 41 41 H 1.08005 * 119.82101 * 0.02562 * 13 12 10 42 42 H 1.08003 * 119.79753 * 179.76990 * 14 13 12 43 43 H 1.07994 * 119.98040 * 180.24923 * 15 14 13 44 44 H 0.96999 * 119.99905 * 180.02562 * 20 19 17 45 45 H 1.08001 * 120.20267 * 0.04855 * 25 12 10 46 46 H 1.08995 * 109.59024 * 173.14386 * 26 9 8 47 47 H 1.08996 * 109.58718 * 293.57806 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6312 2.1287 1.3050 5 8 2.1269 1.3765 2.4143 6 6 1.4352 2.1981 -1.1857 7 6 1.8157 1.4931 -2.4896 8 6 3.3402 1.4962 -2.6410 9 7 3.9361 0.9011 -1.4372 10 6 4.8048 -0.1247 -1.5362 11 8 5.2004 -0.6852 -0.5329 12 6 5.2767 -0.5683 -2.8657 13 6 5.3391 0.3424 -3.9263 14 6 5.7747 -0.0662 -5.1739 15 6 6.1620 -1.3714 -5.3844 16 6 6.1115 -2.3003 -4.3282 17 6 6.5089 -3.6410 -4.5409 18 1 6.9164 -4.2193 -3.7250 19 6 6.3741 -4.2179 -5.8086 20 7 7.0181 -5.3194 -6.0979 21 14 5.2746 -3.4154 -7.0880 22 1 6.0936 -2.5426 -7.9670 23 1 4.6188 -4.4667 -7.9065 24 1 4.2375 -2.5991 -6.4073 25 6 5.6643 -1.8887 -3.0613 26 6 3.5626 1.4413 -0.1229 27 1 -0.3633 0.5238 0.8841 28 1 -0.3634 0.5038 -0.8957 29 1 -0.3633 -1.0276 0.0116 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.0489 3.1351 1.3327 33 1 0.5440 2.1849 1.3609 34 1 1.9043 1.7539 3.2762 35 1 1.8181 3.2185 -1.1994 36 1 0.3499 2.2187 -1.0874 37 1 1.3654 2.0183 -3.3319 38 1 1.4545 0.4650 -2.4667 39 1 3.6939 2.5208 -2.7556 40 1 3.6237 0.9117 -3.5163 41 1 5.0422 1.3691 -3.7707 42 1 5.8157 0.6435 -5.9870 43 1 6.5048 -1.6818 -6.3603 44 1 6.9249 -5.7191 -6.9767 45 1 5.6215 -2.5941 -2.2446 46 1 3.9908 0.8192 0.6630 47 1 3.9348 2.4614 -0.0280 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187205631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:06 Heat of formation + Delta-G solvation = -60.544059 kcal Electronic energy + Delta-G solvation = -27632.276879 eV Core-core repulsion = 23972.731772 eV Total energy + Delta-G solvation = -3659.545108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.59341 -38.66710 -37.21429 -36.39272 -34.35196 -33.57937 -31.70134 -31.04409 -30.16959 -29.77398 -26.35866 -25.71497 -25.07324 -23.71490 -22.46760 -21.91286 -20.71731 -19.44578 -18.23707 -17.62802 -17.46091 -16.16774 -16.09051 -15.99898 -15.25308 -15.15916 -14.71131 -14.53476 -14.22507 -13.88846 -13.55434 -13.41836 -13.06513 -13.00026 -12.87544 -12.67836 -12.59571 -12.46477 -12.09547 -11.91192 -11.67410 -11.32120 -11.13217 -11.07838 -10.98763 -10.91728 -10.67967 -10.40836 -10.29822 -10.16963 -10.09665 -9.90643 -9.70832 -9.34089 -9.07845 -8.34173 -7.84650 -7.69803 -7.00862 -4.55934 1.99100 2.49949 3.03890 3.16445 3.23848 3.31588 3.58068 3.91325 3.98786 4.42810 4.59680 4.67210 4.74559 4.94835 5.07245 5.18582 5.22303 5.28617 5.31196 5.31899 5.39764 5.50006 5.57278 5.59109 5.64756 5.80382 5.84232 5.89131 5.96158 6.04623 6.06068 6.09953 6.18231 6.21329 6.30757 6.37482 6.53679 6.65257 6.68632 6.82610 6.99911 7.22603 7.39818 7.45969 7.49903 7.73527 7.77056 7.98225 8.27453 8.52708 8.68967 8.73671 10.01306 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020952 B = 0.003520 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.088963 B = 7952.787366 C = 8101.345196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.069 4.069 4 C 0.088 3.912 5 O -0.565 6.565 6 C -0.110 4.110 7 C -0.137 4.137 8 C 0.080 3.920 9 N -0.610 5.610 10 C 0.566 3.434 11 O -0.544 6.544 12 C -0.102 4.102 13 C -0.232 4.232 14 C -0.082 4.082 15 C -0.225 4.225 16 C 0.084 3.916 17 C -0.440 4.440 18 H 0.093 0.907 19 C 0.082 3.918 20 N -0.805 5.805 21 Si 0.914 3.086 22 H -0.270 1.270 23 H -0.291 1.291 24 H -0.243 1.243 25 C -0.141 4.141 26 C 0.127 3.873 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.375 0.625 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.286 0.714 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 15.802 7.147 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.070 4.070 4 C 0.010 3.990 5 O -0.369 6.369 6 C -0.147 4.147 7 C -0.175 4.175 8 C -0.042 4.042 9 N -0.343 5.343 10 C 0.357 3.643 11 O -0.422 6.422 12 C -0.105 4.105 13 C -0.252 4.252 14 C -0.101 4.101 15 C -0.244 4.244 16 C 0.081 3.919 17 C -0.468 4.468 18 H 0.111 0.889 19 C -0.138 4.138 20 N -0.428 5.428 21 Si 0.741 3.259 22 H -0.196 1.196 23 H -0.219 1.219 24 H -0.166 1.166 25 C -0.161 4.161 26 C 0.004 3.996 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.222 0.778 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.131 0.869 42 H 0.117 0.883 43 H 0.120 0.880 44 H 0.097 0.903 45 H 0.130 0.870 46 H 0.116 0.884 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.911 14.857 7.066 20.913 hybrid contribution -0.640 0.724 -0.268 1.003 sum -13.551 15.581 6.799 21.740 Atomic orbital electron populations 1.21864 0.96347 1.01451 1.01192 1.21459 0.95099 0.94946 1.03072 1.20868 0.96146 0.96821 0.93152 1.22171 0.97172 0.93431 0.86255 1.86562 1.80099 1.53869 1.16391 1.21582 1.00497 0.98634 0.94024 1.21987 0.96562 1.01894 0.97090 1.22649 0.92269 0.99173 0.90118 1.47887 1.44858 1.34903 1.06659 1.18856 0.77591 0.78036 0.89788 1.90701 1.57932 1.55014 1.38573 1.19404 1.04007 0.95473 0.91609 1.20798 1.12510 0.98492 0.93364 1.20532 0.98140 0.95490 0.95894 1.21141 1.10220 0.93720 0.99329 1.17684 0.89558 0.93575 0.91063 1.19556 1.34702 0.95920 0.96643 0.88863 1.26195 0.94247 0.94410 0.98905 1.69679 1.32618 1.17675 1.22850 0.86275 0.81588 0.78537 0.79519 1.19637 1.21850 1.16572 1.21196 1.03050 0.93932 0.97931 1.21392 0.93133 0.98810 0.86274 0.93092 0.92687 0.92980 0.91479 0.91064 0.93860 0.93349 0.77838 0.91947 0.91424 0.90815 0.90873 0.92033 0.85616 0.86851 0.88271 0.88024 0.90300 0.87040 0.88374 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.11 -1.40 4.29 -26.73 -0.11 -1.51 16 3 C -0.07 -0.77 0.38 -154.61 -0.06 -0.83 16 4 C 0.09 0.79 5.58 37.16 0.21 1.00 16 5 O -0.56 -5.70 12.34 -35.23 -0.43 -6.14 16 6 C -0.11 -1.03 4.19 -26.69 -0.11 -1.14 16 7 C -0.14 -1.47 5.72 -26.61 -0.15 -1.62 16 8 C 0.08 1.04 4.69 -3.71 -0.02 1.03 16 9 N -0.61 -9.71 2.34 -174.13 -0.41 -10.12 16 10 C 0.57 11.57 7.46 -12.31 -0.09 11.48 16 11 O -0.54 -12.83 16.08 5.33 0.09 -12.74 16 12 C -0.10 -2.20 5.49 -105.04 -0.58 -2.78 16 13 C -0.23 -4.47 7.42 -38.92 -0.29 -4.76 16 14 C -0.08 -1.66 10.01 -39.73 -0.40 -2.05 16 15 C -0.22 -5.21 7.07 -38.81 -0.27 -5.48 16 16 C 0.08 2.12 5.15 -106.87 -0.55 1.57 16 17 C -0.44 -11.87 9.59 -37.73 -0.36 -12.23 16 18 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 19 C 0.08 2.11 5.43 -17.34 -0.09 2.02 16 20 N -0.80 -21.24 13.93 55.55 0.77 -20.47 16 21 Si 0.91 20.21 24.43 -169.99 -4.15 16.06 16 22 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 23 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.24 -5.42 6.72 56.52 0.38 -5.04 16 25 C -0.14 -3.42 9.33 -38.44 -0.36 -3.78 16 26 C 0.13 1.78 4.90 -3.93 -0.02 1.76 16 27 H 0.05 0.47 6.61 -51.93 -0.34 0.13 16 28 H 0.05 0.51 6.40 -51.93 -0.33 0.18 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.02 6.12 -51.93 -0.32 0.71 16 31 H 0.07 1.07 7.44 -51.93 -0.39 0.68 16 32 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.37 6.72 -51.93 -0.35 0.02 16 34 H 0.38 2.01 9.12 45.56 0.42 2.42 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.55 6.45 -51.93 -0.33 0.22 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.89 6.45 -51.93 -0.33 0.55 16 39 H 0.06 0.69 7.99 -51.93 -0.41 0.28 16 40 H 0.13 1.85 4.06 -51.93 -0.21 1.64 16 41 H 0.11 1.82 5.26 -52.48 -0.28 1.54 16 42 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 43 H 0.10 2.34 4.45 -52.49 -0.23 2.10 16 44 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 45 H 0.11 2.77 7.88 -52.49 -0.41 2.36 16 46 H 0.10 1.67 6.80 -51.93 -0.35 1.32 16 47 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -30.34 352.40 -7.77 -38.10 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.02 Total: 8.53 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: -2.92 Total: -18.54 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.37 Total: -30.59 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.35 Total: -18.88 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.15 Total: 16.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.34 -7.77 -38.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187205631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.441 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds