Wall clock time and date at job start Tue Mar 31 2020 13:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47242 * 120.00471 * 2 1 3 5 5 C 1.53004 * 109.45932 * 60.02495 * 4 2 1 6 6 C 1.53043 * 109.45953 * 179.97438 * 4 2 1 7 7 C 1.53188 * 109.31273 * 181.37009 * 6 4 2 8 8 N 1.46925 * 108.77713 * 305.36819 * 7 6 4 9 9 S 1.65598 * 120.63296 * 233.58525 * 8 7 6 10 10 O 1.42104 * 104.27651 * 333.92813 * 9 8 7 11 11 O 1.42095 * 104.28128 * 206.07224 * 9 8 7 12 12 C 1.81399 * 104.45041 * 89.99622 * 9 8 7 13 13 C 1.52997 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48508 * 109.47394 * 329.99535 * 19 17 15 23 23 C 1.46926 * 118.73933 * 53.85846 * 8 7 6 24 24 C 1.53036 * 109.44853 * 300.06146 * 4 2 1 25 25 H 1.08997 * 109.46739 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47021 * 299.99357 * 1 2 3 27 27 H 1.08994 * 109.47057 * 59.99650 * 1 2 3 28 28 H 1.08999 * 109.47021 * 240.00643 * 2 1 3 29 29 H 1.09002 * 109.46906 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47438 * 300.00117 * 3 2 1 31 31 H 1.08999 * 109.46645 * 60.00413 * 3 2 1 32 32 H 1.09000 * 109.47026 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47315 * 299.97408 * 5 4 2 34 34 H 1.08998 * 109.46654 * 59.97740 * 5 4 2 35 35 H 1.09000 * 109.49779 * 61.42029 * 6 4 2 36 36 H 1.08995 * 109.52584 * 301.33776 * 6 4 2 37 37 H 1.08993 * 109.59063 * 185.57840 * 7 6 4 38 38 H 1.09005 * 109.58874 * 65.15192 * 7 6 4 39 39 H 1.08996 * 109.47243 * 60.00524 * 12 9 8 40 40 H 1.09001 * 109.47190 * 300.00108 * 12 9 8 41 41 H 1.09001 * 109.47502 * 60.00399 * 13 12 9 42 42 H 1.09001 * 109.47289 * 300.00196 * 13 12 9 43 43 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 44 44 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 45 45 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.59028 * 65.92739 * 23 8 7 47 47 H 1.09006 * 109.58885 * 186.35383 * 23 8 7 48 48 H 1.09008 * 109.49606 * 298.57216 * 24 4 2 49 49 H 1.09002 * 109.49970 * 58.63639 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5304 -2.1640 1.2485 6 6 3.5705 -0.7217 1.2486 7 6 4.0774 -1.4743 2.4827 8 7 3.4746 -0.8766 3.6819 9 16 4.4247 -0.3617 4.9367 10 8 5.5975 -1.1580 4.8379 11 8 3.5774 -0.4436 6.0744 12 6 4.7959 1.3696 4.5427 13 6 5.6793 1.9645 5.6411 14 6 5.9919 3.4251 5.3090 15 6 6.8626 4.0109 6.3906 16 1 7.1626 3.4024 7.2310 17 6 7.2752 5.3238 6.3078 18 7 6.9095 6.0648 5.2847 19 14 8.3539 6.0501 7.6488 20 1 9.7827 5.8391 7.3034 21 1 8.0831 7.5053 7.7679 22 1 8.0534 5.3833 8.9413 23 6 2.0124 -0.7498 3.7492 24 6 1.5284 -0.0005 2.4984 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.8940 -2.6782 2.1381 33 1 0.4404 -2.1643 1.2487 34 1 1.8938 -2.6772 0.3582 35 1 3.9346 0.3054 1.2738 36 1 3.9343 -1.2146 0.3471 37 1 5.1628 -1.3930 2.5401 38 1 3.7907 -2.5238 2.4142 39 1 3.8662 1.9349 4.4778 40 1 5.3196 1.4208 3.5881 41 1 6.6091 1.3993 5.7056 42 1 5.1560 1.9133 6.5959 43 1 6.5151 3.4766 4.3542 44 1 5.0620 3.9900 5.2448 45 1 7.1994 6.9886 5.2267 46 1 1.5607 -1.7412 3.7817 47 1 1.7348 -0.1901 4.6425 48 1 1.9114 1.0200 2.5121 49 1 0.4386 0.0200 2.4860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188071390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:29 Heat of formation + Delta-G solvation = -105.025163 kcal Electronic energy + Delta-G solvation = -26272.121555 eV Core-core repulsion = 22746.091553 eV Total energy + Delta-G solvation = -3526.030002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.19898 -36.94321 -35.96501 -35.64751 -34.65322 -32.17873 -31.61334 -31.23452 -28.55708 -27.79544 -26.61422 -24.30345 -23.69012 -23.52081 -21.33174 -20.49960 -19.17432 -18.09495 -17.28666 -16.58132 -16.19635 -15.71995 -15.54796 -14.99979 -14.89937 -14.60851 -14.48021 -14.41111 -14.14914 -13.88791 -13.02928 -12.83440 -12.59743 -12.49165 -12.27913 -12.25883 -12.17532 -12.00119 -11.91415 -11.79082 -11.75940 -11.63976 -11.47248 -11.24145 -11.06047 -10.95809 -10.92059 -10.84420 -10.68903 -10.39948 -10.29744 -10.24455 -9.94685 -9.45727 -9.20278 -8.83958 -8.40735 -6.05663 -4.08675 0.47019 2.76720 3.30440 3.36523 3.40717 4.03493 4.28866 4.36085 4.42668 4.43561 4.47876 4.67153 4.90137 4.97558 5.07561 5.11349 5.17210 5.21086 5.22638 5.23902 5.30854 5.37047 5.39926 5.46495 5.57560 5.58352 5.64168 5.68657 5.71738 5.75617 5.80905 5.84701 5.91071 5.92957 5.99864 6.10284 6.12838 6.22777 6.27112 6.34677 6.46414 6.55948 6.87927 7.57117 7.67235 7.92408 8.33108 8.97559 9.56039 11.05549 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.003320 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.502096 B = 8432.420305 C = 9465.609392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.155 4.155 4 C -0.052 4.052 5 C -0.149 4.149 6 C -0.129 4.129 7 C 0.121 3.879 8 N -1.002 6.002 9 S 2.597 3.403 10 O -0.961 6.961 11 O -0.961 6.961 12 C -0.608 4.608 13 C -0.106 4.106 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.120 3.880 24 C -0.131 4.131 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -15.140 -12.738 24.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 C -0.212 4.212 4 C -0.052 4.052 5 C -0.206 4.206 6 C -0.168 4.168 7 C -0.005 4.005 8 N -0.839 5.839 9 S 2.695 3.305 10 O -0.952 6.952 11 O -0.952 6.952 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.005 4.005 24 C -0.170 4.170 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.108 0.892 48 H 0.092 0.908 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.338 -15.542 -12.068 23.772 hybrid contribution 0.494 1.143 0.084 1.248 sum -12.844 -14.399 -11.984 22.714 Atomic orbital electron populations 1.21958 0.95457 1.01686 1.01745 1.21121 0.95603 0.96240 0.97313 1.21978 1.01479 0.95856 1.01857 1.20466 0.94845 0.95343 0.94575 1.22042 1.01054 0.95544 1.01944 1.22082 0.95196 1.01704 0.97827 1.21423 0.98139 0.97233 0.83673 1.57851 1.15947 1.76011 1.34082 1.05461 0.73616 0.77956 0.73511 1.93555 1.49215 1.66466 1.85931 1.93554 1.66628 1.87039 1.47943 1.30598 1.10518 1.22499 1.10380 1.21497 0.96888 1.01835 0.94295 1.19052 0.96981 0.87414 0.97231 1.21260 1.31149 0.96556 1.07477 0.92389 1.25015 0.96308 0.97144 0.95887 1.69953 1.45557 1.08122 1.29809 0.86560 0.80770 0.78252 0.82264 1.20563 1.21171 1.19730 1.21529 0.79096 1.01221 0.98691 1.22218 1.00991 0.99860 0.93899 0.92531 0.92289 0.93061 0.91418 0.92217 0.93010 0.92176 0.91988 0.92406 0.92822 0.90802 0.90853 0.89197 0.91092 0.85576 0.85580 0.91675 0.91678 0.96170 0.96156 0.92910 0.91073 0.89193 0.90812 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.49 37.16 0.32 -0.67 16 2 C -0.08 -0.60 2.28 -90.62 -0.21 -0.81 16 3 C -0.15 -1.23 8.49 37.16 0.32 -0.92 16 4 C -0.05 -0.39 0.32 -154.47 -0.05 -0.44 16 5 C -0.15 -1.02 7.36 37.16 0.27 -0.75 16 6 C -0.13 -1.06 4.51 -26.61 -0.12 -1.18 16 7 C 0.12 1.19 5.85 -3.71 -0.02 1.16 16 8 N -1.00 -11.50 3.22 -113.28 -0.36 -11.86 16 9 S 2.60 39.41 5.41 -107.50 -0.58 38.83 16 10 O -0.96 -17.12 16.73 -57.54 -0.96 -18.08 16 11 O -0.96 -17.11 16.71 -57.54 -0.96 -18.07 16 12 C -0.61 -9.53 6.18 37.16 0.23 -9.31 16 13 C -0.11 -2.17 5.16 -26.73 -0.14 -2.31 16 14 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 15 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.18 5.87 -3.49 -0.02 1.16 16 24 C -0.13 -1.08 4.21 -26.39 -0.11 -1.19 16 25 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 26 H 0.06 0.39 6.40 -51.93 -0.33 0.06 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.50 6.46 -51.93 -0.34 0.16 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.51 6.46 -51.93 -0.34 0.17 16 32 H 0.06 0.46 4.97 -51.93 -0.26 0.20 16 33 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.65 6.51 -51.93 -0.34 0.31 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.93 7.10 -51.93 -0.37 0.56 16 38 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 39 H 0.13 1.78 8.14 -51.93 -0.42 1.35 16 40 H 0.13 1.78 8.14 -51.92 -0.42 1.35 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.07 0.63 6.69 -51.93 -0.35 0.28 16 47 H 0.09 0.93 7.09 -51.93 -0.37 0.56 16 48 H 0.07 0.65 6.51 -51.92 -0.34 0.31 16 49 H 0.08 0.54 6.36 -51.93 -0.33 0.21 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -33.70 374.16 -10.16 -43.86 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -8.56 Total: -2.81 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -0.08 Total: -28.24 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.37 Total: -37.75 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.92 Total: -36.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 39.41 SS G_CDS: -0.58 Total: 38.83 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.70 -10.16 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188071390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.170 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds