Wall clock time and date at job start Tue Mar 31 2020 13:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47126 * 2 1 4 4 C 1.53000 * 109.47242 * 120.00471 * 2 1 3 5 5 C 1.53004 * 109.45932 * 60.02495 * 4 2 1 6 6 C 1.53043 * 109.45953 * 179.97438 * 4 2 1 7 7 C 1.53188 * 109.31273 * 181.37009 * 6 4 2 8 8 N 1.46925 * 108.77713 * 305.36819 * 7 6 4 9 9 S 1.65598 * 120.63296 * 233.58525 * 8 7 6 10 10 O 1.42104 * 104.27651 * 333.92813 * 9 8 7 11 11 O 1.42095 * 104.28128 * 206.07224 * 9 8 7 12 12 C 1.81399 * 104.45041 * 89.99622 * 9 8 7 13 13 C 1.52997 * 109.47147 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 180.02562 * 13 12 9 15 15 C 1.50698 * 109.47184 * 180.02562 * 14 13 12 16 16 H 1.08005 * 119.99819 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00192 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47418 * 89.99710 * 19 17 15 21 21 H 1.48498 * 109.47091 * 209.99770 * 19 17 15 22 22 H 1.48508 * 109.47394 * 329.99535 * 19 17 15 23 23 C 1.46926 * 118.73933 * 53.85846 * 8 7 6 24 24 C 1.53036 * 109.44853 * 300.06146 * 4 2 1 25 25 H 1.08997 * 109.46739 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47021 * 299.99357 * 1 2 3 27 27 H 1.08994 * 109.47057 * 59.99650 * 1 2 3 28 28 H 1.08999 * 109.47021 * 240.00643 * 2 1 3 29 29 H 1.09002 * 109.46906 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47438 * 300.00117 * 3 2 1 31 31 H 1.08999 * 109.46645 * 60.00413 * 3 2 1 32 32 H 1.09000 * 109.47026 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.47315 * 299.97408 * 5 4 2 34 34 H 1.08998 * 109.46654 * 59.97740 * 5 4 2 35 35 H 1.09000 * 109.49779 * 61.42029 * 6 4 2 36 36 H 1.08995 * 109.52584 * 301.33776 * 6 4 2 37 37 H 1.08993 * 109.59063 * 185.57840 * 7 6 4 38 38 H 1.09005 * 109.58874 * 65.15192 * 7 6 4 39 39 H 1.08996 * 109.47243 * 60.00524 * 12 9 8 40 40 H 1.09001 * 109.47190 * 300.00108 * 12 9 8 41 41 H 1.09001 * 109.47502 * 60.00399 * 13 12 9 42 42 H 1.09001 * 109.47289 * 300.00196 * 13 12 9 43 43 H 1.09001 * 109.47002 * 299.99574 * 14 13 12 44 44 H 1.08993 * 109.46955 * 60.00011 * 14 13 12 45 45 H 0.96996 * 120.00505 * 179.97438 * 18 17 15 46 46 H 1.08997 * 109.59028 * 65.92739 * 23 8 7 47 47 H 1.09006 * 109.58885 * 186.35383 * 23 8 7 48 48 H 1.09008 * 109.49606 * 298.57216 * 24 4 2 49 49 H 1.09002 * 109.49970 * 58.63639 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5304 -2.1640 1.2485 6 6 3.5705 -0.7217 1.2486 7 6 4.0774 -1.4743 2.4827 8 7 3.4746 -0.8766 3.6819 9 16 4.4247 -0.3617 4.9367 10 8 5.5975 -1.1580 4.8379 11 8 3.5774 -0.4436 6.0744 12 6 4.7959 1.3696 4.5427 13 6 5.6793 1.9645 5.6411 14 6 5.9919 3.4251 5.3090 15 6 6.8626 4.0109 6.3906 16 1 7.1626 3.4024 7.2310 17 6 7.2752 5.3238 6.3078 18 7 6.9095 6.0648 5.2847 19 14 8.3539 6.0501 7.6488 20 1 9.7827 5.8391 7.3034 21 1 8.0831 7.5053 7.7679 22 1 8.0534 5.3833 8.9413 23 6 2.0124 -0.7498 3.7492 24 6 1.5284 -0.0005 2.4984 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.8940 -2.6782 2.1381 33 1 0.4404 -2.1643 1.2487 34 1 1.8938 -2.6772 0.3582 35 1 3.9346 0.3054 1.2738 36 1 3.9343 -1.2146 0.3471 37 1 5.1628 -1.3930 2.5401 38 1 3.7907 -2.5238 2.4142 39 1 3.8662 1.9349 4.4778 40 1 5.3196 1.4208 3.5881 41 1 6.6091 1.3993 5.7056 42 1 5.1560 1.9133 6.5959 43 1 6.5151 3.4766 4.3542 44 1 5.0620 3.9900 5.2448 45 1 7.1994 6.9886 5.2267 46 1 1.5607 -1.7412 3.7817 47 1 1.7348 -0.1901 4.6425 48 1 1.9114 1.0200 2.5121 49 1 0.4386 0.0200 2.4860 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188071390.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:28 Heat of formation + Delta-G solvation = -125.963413 kcal Electronic energy + Delta-G solvation = -26273.029505 eV Core-core repulsion = 22746.091553 eV Total energy + Delta-G solvation = -3526.937952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.86860 -38.27471 -37.10751 -36.62794 -36.46608 -34.17864 -32.30688 -31.94722 -29.67127 -29.15473 -27.21949 -25.69349 -24.88298 -24.31039 -22.50695 -21.79449 -20.18886 -19.14622 -18.64331 -18.08523 -17.35729 -17.15070 -16.50200 -16.20668 -16.11603 -15.59689 -15.48935 -15.28995 -15.04925 -14.64108 -14.50112 -14.11569 -13.77415 -13.56721 -13.52420 -13.43727 -13.21448 -13.04958 -12.95282 -12.85875 -12.77497 -12.75107 -12.64173 -12.53787 -12.41955 -12.18144 -12.13974 -11.78161 -11.71845 -11.62584 -11.43376 -11.32652 -11.04661 -10.91766 -10.85303 -10.58963 -9.80499 -8.23923 -6.35215 -0.77162 1.39262 1.40075 1.51527 1.67317 2.38808 2.79102 3.09428 3.12641 3.58571 3.76342 3.79144 3.84085 3.88629 4.01868 4.25279 4.34957 4.36811 4.45144 4.46836 4.51246 4.59262 4.61634 4.73000 4.75885 4.88783 4.90078 4.93959 4.94811 4.98874 5.03737 5.09984 5.14669 5.17049 5.18204 5.26064 5.33139 5.40468 5.41547 5.43173 5.51694 5.60203 5.63678 5.73845 5.74891 5.77536 6.18054 6.80089 7.34192 8.87570 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017106 B = 0.003320 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.502096 B = 8432.420305 C = 9465.609392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 C -0.156 4.156 4 C -0.050 4.050 5 C -0.147 4.147 6 C -0.128 4.128 7 C 0.114 3.886 8 N -0.993 5.993 9 S 2.622 3.378 10 O -0.987 6.987 11 O -0.987 6.987 12 C -0.608 4.608 13 C -0.105 4.105 14 C 0.033 3.967 15 C -0.554 4.554 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.265 1.265 23 C 0.113 3.887 24 C -0.130 4.130 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.002 0.998 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.287 -16.108 -13.298 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 C -0.214 4.214 4 C -0.050 4.050 5 C -0.203 4.203 6 C -0.167 4.167 7 C -0.011 4.011 8 N -0.832 5.832 9 S 2.718 3.282 10 O -0.978 6.978 11 O -0.978 6.978 12 C -0.739 4.739 13 C -0.145 4.145 14 C -0.005 4.005 15 C -0.592 4.592 16 H 0.078 0.922 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.189 1.189 23 C -0.012 4.012 24 C -0.168 4.168 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.084 0.916 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.022 -16.508 -12.624 25.070 hybrid contribution 0.657 1.421 0.184 1.576 sum -13.366 -15.087 -12.440 23.685 Atomic orbital electron populations 1.21945 0.94835 1.02197 1.01733 1.21075 0.96055 0.95432 0.97214 1.21993 1.01110 0.96632 1.01615 1.20457 0.94257 0.95956 0.94343 1.22019 1.01561 0.94698 1.02065 1.22094 0.95815 1.01207 0.97580 1.21654 0.97863 0.98223 0.83355 1.57569 1.16428 1.75383 1.33843 1.04511 0.73035 0.77085 0.73563 1.93516 1.50826 1.66898 1.86524 1.93514 1.67159 1.87176 1.49912 1.30565 1.10450 1.23551 1.09320 1.21308 0.98049 0.99056 0.96049 1.18939 0.95442 0.90343 0.95784 1.21735 1.31845 0.97273 1.08306 0.92226 1.25933 0.97661 0.97603 0.98299 1.70066 1.46671 1.08558 1.31615 0.85476 0.78933 0.77514 0.79334 1.19665 1.20455 1.18905 1.21761 0.77764 1.02332 0.99310 1.22229 1.01891 0.99257 0.93451 0.91727 0.92456 0.92981 0.90909 0.92821 0.92838 0.92859 0.92448 0.91635 0.92108 0.91552 0.89278 0.89857 0.89548 0.84100 0.84092 0.91696 0.91725 0.97963 0.97950 0.92602 0.89514 0.89861 0.91592 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.49 71.98 0.61 -1.01 16 2 C -0.08 -0.96 2.28 -10.79 -0.02 -0.99 16 3 C -0.16 -2.31 8.49 71.98 0.61 -1.70 16 4 C -0.05 -0.64 0.32 -52.15 -0.02 -0.66 16 5 C -0.15 -1.59 7.36 71.98 0.53 -1.06 16 6 C -0.13 -1.87 4.51 30.67 0.14 -1.73 16 7 C 0.11 2.05 5.85 86.36 0.50 2.55 16 8 N -0.99 -21.57 3.22 -512.29 -1.65 -23.22 16 9 S 2.62 78.43 5.41 -56.49 -0.31 78.12 16 10 O -0.99 -34.83 16.73 -127.65 -2.13 -36.97 16 11 O -0.99 -34.83 16.71 -127.65 -2.13 -36.96 16 12 C -0.61 -19.03 6.18 71.98 0.44 -18.59 16 13 C -0.11 -4.40 5.16 30.60 0.16 -4.24 16 14 C 0.03 1.74 4.97 29.85 0.15 1.88 16 15 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 17 C 0.00 0.19 5.46 84.65 0.46 0.65 16 18 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 19 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 22 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 23 C 0.11 2.04 5.87 86.51 0.51 2.55 16 24 C -0.13 -1.90 4.21 30.82 0.13 -1.77 16 25 H 0.06 0.60 6.43 -2.39 -0.02 0.59 16 26 H 0.06 0.64 6.40 -2.39 -0.02 0.62 16 27 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.85 6.46 -2.39 -0.02 0.83 16 30 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.85 6.46 -2.39 -0.02 0.84 16 32 H 0.06 0.69 4.97 -2.39 -0.01 0.68 16 33 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 1.08 6.51 -2.39 -0.02 1.07 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.63 7.10 -2.39 -0.02 1.62 16 38 H 0.09 1.33 6.69 -2.38 -0.02 1.31 16 39 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 40 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 41 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 43 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 45 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 46 H 0.09 1.33 6.69 -2.39 -0.02 1.32 16 47 H 0.08 1.64 7.09 -2.38 -0.02 1.62 16 48 H 0.07 1.09 6.51 -2.38 -0.02 1.07 16 49 H 0.09 1.09 6.36 -2.39 -0.02 1.07 16 Total: -1.00 -71.95 374.16 1.44 -70.51 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.91 Total: 13.48 kcal Atomic # 6 Polarization: -60.17 SS G_CDS: 4.44 Total: -55.74 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.36 Total: -78.91 kcal Atomic # 8 Polarization: -69.66 SS G_CDS: -4.27 Total: -73.93 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 78.43 SS G_CDS: -0.31 Total: 78.12 kcal Total: -71.95 1.44 -70.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188071390.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.454 kcal (2) G-P(sol) polarization free energy of solvation -71.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds