Wall clock time and date at job start Tue Mar 31 2020 13:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00426 * 2 1 4 4 C 1.53001 * 109.47268 * 240.00546 * 3 2 1 5 5 C 1.52996 * 109.47459 * 120.00300 * 3 2 1 6 6 C 1.53001 * 109.47260 * 59.99665 * 5 3 2 7 7 C 1.50703 * 109.47155 * 359.97438 * 3 2 1 8 8 O 1.21294 * 119.99914 * 119.99709 * 7 3 2 9 9 N 1.34779 * 119.99991 * 300.00516 * 7 3 2 10 10 C 1.39924 * 119.99687 * 185.24707 * 9 7 3 11 11 C 1.38934 * 120.04257 * 33.33340 * 10 9 7 12 12 C 1.38117 * 120.03593 * 179.97438 * 11 10 9 13 13 C 1.38213 * 120.13047 * 359.68461 * 12 11 10 14 14 C 1.38771 * 120.08068 * 0.59741 * 13 12 11 15 15 O 1.35896 * 120.01969 * 179.70457 * 14 13 12 16 16 C 1.42898 * 117.00219 * 359.71428 * 15 14 13 17 17 C 1.52995 * 109.47065 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46891 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99944 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99739 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00341 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47337 * 59.99967 * 22 20 18 24 24 H 1.48507 * 109.47421 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46947 * 299.99844 * 22 20 18 26 26 C 1.38627 * 119.95652 * 359.41922 * 14 13 12 27 27 H 1.08000 * 119.99999 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99902 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99462 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47484 * 179.97438 * 4 3 2 31 31 H 1.09007 * 109.46822 * 299.99575 * 4 3 2 32 32 H 1.09001 * 109.47305 * 59.99908 * 4 3 2 33 33 H 1.09000 * 109.47644 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46644 * 299.99966 * 5 3 2 35 35 H 1.09004 * 109.46608 * 60.00264 * 6 5 3 36 36 H 1.08996 * 109.46870 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47271 * 300.00816 * 6 5 3 38 38 H 0.96997 * 120.00328 * 5.24611 * 9 7 3 39 39 H 1.07996 * 119.98161 * 359.97438 * 11 10 9 40 40 H 1.08005 * 119.93513 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.96208 * 180.31586 * 13 12 11 42 42 H 1.09001 * 109.47263 * 300.00830 * 16 15 14 43 43 H 1.09006 * 109.46631 * 60.00508 * 16 15 14 44 44 H 1.09001 * 109.47470 * 300.00350 * 17 16 15 45 45 H 1.08997 * 109.47136 * 60.00762 * 17 16 15 46 46 H 0.97000 * 119.99974 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.06221 * 180.29844 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3861 -1.2493 5 6 2.9433 1.3860 1.2491 6 6 3.9374 0.2230 1.2492 7 6 1.0844 2.4505 -0.0006 8 8 1.0892 3.2530 0.9089 9 7 0.2032 2.5833 -1.0118 10 6 -0.6311 3.7051 -1.0699 11 6 -0.1773 4.9341 -0.6076 12 6 -1.0007 6.0415 -0.6656 13 6 -2.2751 5.9318 -1.1891 14 6 -2.7358 4.7054 -1.6469 15 8 -3.9912 4.5977 -2.1559 16 6 -4.7843 5.7861 -2.1835 17 6 -6.1552 5.4704 -2.7850 18 6 -6.9914 6.7239 -2.8146 19 1 -6.5854 7.6528 -2.4422 20 6 -8.2747 6.6847 -3.3173 21 7 -8.7689 5.5537 -3.7713 22 14 -9.3109 8.2385 -3.3548 23 1 -8.6320 9.2664 -4.1841 24 1 -10.6416 7.9321 -3.9384 25 1 -9.4826 8.7523 -1.9721 26 6 -1.9124 3.5916 -1.5902 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 3.4879 2.3302 -1.2496 31 1 3.6515 0.5575 -1.2493 32 1 2.3164 1.3284 -2.1393 33 1 3.4880 2.3301 1.2494 34 1 2.3166 1.3283 2.1392 35 1 4.5640 0.2808 0.3591 36 1 4.5638 0.2805 2.1393 37 1 3.3924 -0.7209 1.2491 38 1 0.1474 1.9012 -1.6992 39 1 0.8199 5.0237 -0.2028 40 1 -0.6464 6.9961 -0.3054 41 1 -2.9149 6.8005 -1.2378 42 1 -4.9111 6.1620 -1.1683 43 1 -4.2858 6.5414 -2.7911 44 1 -6.0288 5.0942 -3.8002 45 1 -6.6535 4.7153 -2.1771 46 1 -9.6716 5.5263 -4.1252 47 1 -2.2675 2.6374 -1.9504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190761721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:14 Heat of formation + Delta-G solvation = -38.691581 kcal Electronic energy + Delta-G solvation = -25786.023399 eV Core-core repulsion = 22127.425886 eV Total energy + Delta-G solvation = -3658.597513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.27398 -39.58863 -37.62812 -36.60170 -34.81817 -33.36998 -32.42199 -30.91407 -30.17917 -29.42109 -28.74451 -25.79873 -25.09466 -23.26358 -22.66667 -22.15670 -21.40619 -20.35955 -19.25851 -18.16722 -16.99156 -16.58081 -16.30568 -16.13573 -15.62108 -15.33169 -15.14845 -15.09779 -14.73226 -14.47017 -14.16219 -13.79502 -13.52390 -13.22904 -12.89724 -12.75353 -12.59360 -12.43937 -12.32195 -12.15927 -12.02330 -11.82487 -11.64357 -11.36801 -11.26357 -10.93026 -10.85878 -10.82035 -10.53400 -10.25251 -9.95531 -9.82531 -9.78822 -9.65973 -9.31968 -8.46116 -8.32549 -7.77723 -6.10767 -4.15480 1.30595 1.67036 1.80920 2.38460 2.73051 3.28676 3.33021 3.34842 3.85376 3.95118 4.13842 4.21349 4.41160 4.49551 4.58400 4.84435 4.94885 5.00096 5.09949 5.13361 5.25569 5.26491 5.35012 5.35618 5.42061 5.50159 5.53592 5.55332 5.64970 5.70542 5.77770 5.80272 5.97464 6.03117 6.04099 6.14605 6.23851 6.28559 6.34619 6.53708 6.60720 6.72689 6.97401 7.18322 7.49189 7.63113 7.79852 7.86273 8.04138 8.23085 8.89821 9.48795 11.00706 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.002109 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.998556 B =13275.997519 C =13804.864923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.049 4.049 4 C -0.141 4.141 5 C -0.097 4.097 6 C -0.154 4.154 7 C 0.525 3.475 8 O -0.512 6.512 9 N -0.670 5.670 10 C 0.176 3.824 11 C -0.170 4.170 12 C -0.062 4.062 13 C -0.224 4.224 14 C 0.164 3.836 15 O -0.314 6.314 16 C 0.065 3.935 17 C 0.026 3.974 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.189 4.189 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.411 0.589 39 H 0.129 0.871 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.835 -11.117 6.284 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.167 4.167 3 C -0.052 4.052 4 C -0.199 4.199 5 C -0.135 4.135 6 C -0.212 4.212 7 C 0.312 3.688 8 O -0.385 6.385 9 N -0.316 5.316 10 C 0.082 3.918 11 C -0.190 4.190 12 C -0.080 4.080 13 C -0.243 4.243 14 C 0.116 3.884 15 O -0.227 6.227 16 C -0.009 4.009 17 C -0.012 4.012 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.210 4.210 27 H 0.125 0.875 28 H 0.126 0.874 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.249 0.751 39 H 0.147 0.853 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.073 0.927 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 25.612 -10.811 6.783 28.616 hybrid contribution -0.798 0.646 -0.346 1.083 sum 24.814 -10.165 6.438 27.577 Atomic orbital electron populations 1.24419 0.96186 1.03503 0.99307 1.22733 0.95633 0.96878 1.01452 1.20033 0.94831 0.91371 0.98988 1.21909 0.99547 1.03329 0.95088 1.21349 0.96924 0.99565 0.95671 1.21893 0.98989 0.98246 1.02032 1.20613 0.80637 0.86461 0.81044 1.90736 1.69486 1.43637 1.34673 1.43765 1.37223 1.22979 1.27659 1.17312 0.89154 0.86404 0.98907 1.20868 1.01318 0.90945 1.05856 1.20776 0.92916 0.98063 0.96288 1.21395 0.98379 0.97667 1.06858 1.18812 0.85360 0.92862 0.91330 1.86160 1.21651 1.38666 1.76261 1.23356 0.93003 0.84161 1.00374 1.19123 0.87113 0.98028 0.96897 1.20934 0.98560 0.94718 1.42317 0.92384 1.24991 0.97746 0.96442 0.95020 1.69965 1.16508 1.25443 1.40846 0.86540 0.79314 0.83015 0.78457 1.20094 1.21120 1.20082 1.19982 0.92045 0.98683 1.10289 0.87486 0.87423 0.85779 0.91604 0.90549 0.91898 0.90901 0.91004 0.92256 0.92372 0.92384 0.75145 0.85297 0.85750 0.85028 0.93014 0.93003 0.95398 0.95394 0.92651 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.53 13.08 29.01 0.38 -1.15 16 2 C -0.15 -1.00 7.98 -36.03 -0.29 -1.29 16 3 C -0.05 -0.37 0.63 -156.81 -0.10 -0.47 16 4 C -0.14 -0.80 8.00 37.16 0.30 -0.51 16 5 C -0.10 -0.75 4.27 -26.73 -0.11 -0.86 16 6 C -0.15 -0.81 9.30 37.16 0.35 -0.47 16 7 C 0.53 5.82 5.08 -10.98 -0.06 5.76 16 8 O -0.51 -7.50 13.67 5.55 0.08 -7.42 16 9 N -0.67 -7.11 3.61 -9.87 -0.04 -7.15 16 10 C 0.18 2.42 6.28 -83.71 -0.53 1.89 16 11 C -0.17 -2.43 8.65 -39.37 -0.34 -2.77 16 12 C -0.06 -0.87 10.03 -39.63 -0.40 -1.27 16 13 C -0.22 -3.58 9.04 -39.39 -0.36 -3.94 16 14 C 0.16 2.88 6.68 -39.24 -0.26 2.61 16 15 O -0.31 -6.44 10.13 -19.41 -0.20 -6.63 16 16 C 0.07 1.39 4.68 37.15 0.17 1.57 16 17 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 18 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.19 -2.85 9.90 -39.25 -0.39 -3.24 16 27 H 0.11 0.70 8.06 -52.49 -0.42 0.27 16 28 H 0.11 1.05 5.16 -52.49 -0.27 0.78 16 29 H 0.12 0.61 7.00 -52.48 -0.37 0.24 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.32 6.43 -51.93 -0.33 -0.02 16 32 H 0.06 0.32 7.69 -51.93 -0.40 -0.08 16 33 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.06 0.26 6.43 -51.93 -0.33 -0.08 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.28 6.62 -51.93 -0.34 -0.07 16 38 H 0.41 3.31 7.48 -40.82 -0.31 3.00 16 39 H 0.13 1.83 6.41 -52.49 -0.34 1.49 16 40 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 41 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 42 H 0.05 1.06 7.67 -51.93 -0.40 0.66 16 43 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 47 H 0.13 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -31.98 378.89 -8.08 -40.06 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.16 Total: 1.85 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -2.19 Total: -16.99 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.70 Total: -32.82 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: -0.12 Total: -14.06 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.98 -8.08 -40.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190761721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.368 kcal (2) G-P(sol) polarization free energy of solvation -31.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds