Wall clock time and date at job start Tue Mar 31 2020 13:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00426 * 2 1 4 4 C 1.53001 * 109.47268 * 240.00546 * 3 2 1 5 5 C 1.52996 * 109.47459 * 120.00300 * 3 2 1 6 6 C 1.53001 * 109.47260 * 59.99665 * 5 3 2 7 7 C 1.50703 * 109.47155 * 359.97438 * 3 2 1 8 8 O 1.21294 * 119.99914 * 119.99709 * 7 3 2 9 9 N 1.34779 * 119.99991 * 300.00516 * 7 3 2 10 10 C 1.39924 * 119.99687 * 185.24707 * 9 7 3 11 11 C 1.38934 * 120.04257 * 33.33340 * 10 9 7 12 12 C 1.38117 * 120.03593 * 179.97438 * 11 10 9 13 13 C 1.38213 * 120.13047 * 359.68461 * 12 11 10 14 14 C 1.38771 * 120.08068 * 0.59741 * 13 12 11 15 15 O 1.35896 * 120.01969 * 179.70457 * 14 13 12 16 16 C 1.42898 * 117.00219 * 359.71428 * 15 14 13 17 17 C 1.52995 * 109.47065 * 180.02562 * 16 15 14 18 18 C 1.50707 * 109.46891 * 180.02562 * 17 16 15 19 19 H 1.07997 * 119.99944 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99739 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00341 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99968 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47337 * 59.99967 * 22 20 18 24 24 H 1.48507 * 109.47421 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46947 * 299.99844 * 22 20 18 26 26 C 1.38627 * 119.95652 * 359.41922 * 14 13 12 27 27 H 1.08000 * 119.99999 * 180.02562 * 1 2 3 28 28 H 1.08000 * 119.99902 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99462 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47484 * 179.97438 * 4 3 2 31 31 H 1.09007 * 109.46822 * 299.99575 * 4 3 2 32 32 H 1.09001 * 109.47305 * 59.99908 * 4 3 2 33 33 H 1.09000 * 109.47644 * 180.02562 * 5 3 2 34 34 H 1.09007 * 109.46644 * 299.99966 * 5 3 2 35 35 H 1.09004 * 109.46608 * 60.00264 * 6 5 3 36 36 H 1.08996 * 109.46870 * 180.02562 * 6 5 3 37 37 H 1.09000 * 109.47271 * 300.00816 * 6 5 3 38 38 H 0.96997 * 120.00328 * 5.24611 * 9 7 3 39 39 H 1.07996 * 119.98161 * 359.97438 * 11 10 9 40 40 H 1.08005 * 119.93513 * 179.97438 * 12 11 10 41 41 H 1.08002 * 119.96208 * 180.31586 * 13 12 11 42 42 H 1.09001 * 109.47263 * 300.00830 * 16 15 14 43 43 H 1.09006 * 109.46631 * 60.00508 * 16 15 14 44 44 H 1.09001 * 109.47470 * 300.00350 * 17 16 15 45 45 H 1.08997 * 109.47136 * 60.00762 * 17 16 15 46 46 H 0.97000 * 119.99974 * 180.02562 * 21 20 18 47 47 H 1.08000 * 120.06221 * 180.29844 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9431 1.3861 -1.2493 5 6 2.9433 1.3860 1.2491 6 6 3.9374 0.2230 1.2492 7 6 1.0844 2.4505 -0.0006 8 8 1.0892 3.2530 0.9089 9 7 0.2032 2.5833 -1.0118 10 6 -0.6311 3.7051 -1.0699 11 6 -0.1773 4.9341 -0.6076 12 6 -1.0007 6.0415 -0.6656 13 6 -2.2751 5.9318 -1.1891 14 6 -2.7358 4.7054 -1.6469 15 8 -3.9912 4.5977 -2.1559 16 6 -4.7843 5.7861 -2.1835 17 6 -6.1552 5.4704 -2.7850 18 6 -6.9914 6.7239 -2.8146 19 1 -6.5854 7.6528 -2.4422 20 6 -8.2747 6.6847 -3.3173 21 7 -8.7689 5.5537 -3.7713 22 14 -9.3109 8.2385 -3.3548 23 1 -8.6320 9.2664 -4.1841 24 1 -10.6416 7.9321 -3.9384 25 1 -9.4826 8.7523 -1.9721 26 6 -1.9124 3.5916 -1.5902 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9354 -0.0004 30 1 3.4879 2.3302 -1.2496 31 1 3.6515 0.5575 -1.2493 32 1 2.3164 1.3284 -2.1393 33 1 3.4880 2.3301 1.2494 34 1 2.3166 1.3283 2.1392 35 1 4.5640 0.2808 0.3591 36 1 4.5638 0.2805 2.1393 37 1 3.3924 -0.7209 1.2491 38 1 0.1474 1.9012 -1.6992 39 1 0.8199 5.0237 -0.2028 40 1 -0.6464 6.9961 -0.3054 41 1 -2.9149 6.8005 -1.2378 42 1 -4.9111 6.1620 -1.1683 43 1 -4.2858 6.5414 -2.7911 44 1 -6.0288 5.0942 -3.8002 45 1 -6.6535 4.7153 -2.1771 46 1 -9.6716 5.5263 -4.1252 47 1 -2.2675 2.6374 -1.9504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190761721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:13 Heat of formation + Delta-G solvation = -56.219697 kcal Electronic energy + Delta-G solvation = -25786.783475 eV Core-core repulsion = 22127.425886 eV Total energy + Delta-G solvation = -3659.357589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.19547 -40.87637 -38.78576 -37.51128 -35.90238 -35.39790 -33.02035 -32.61733 -31.23086 -30.54512 -29.77486 -27.05286 -26.34772 -24.44013 -23.84806 -22.97435 -22.70613 -21.68740 -20.08784 -19.49158 -18.36510 -17.77992 -17.31322 -17.22914 -16.98069 -16.93537 -16.56350 -16.10483 -16.04013 -15.28200 -14.94435 -14.69526 -14.53342 -14.37763 -14.31068 -14.27827 -13.68760 -13.32573 -13.29621 -13.10716 -12.93318 -12.89075 -12.70225 -12.60767 -12.56908 -12.52745 -12.13506 -11.82065 -11.72724 -11.59485 -11.43948 -11.41227 -11.18374 -10.84002 -10.61036 -10.39623 -9.51105 -9.03636 -8.26303 -6.39806 0.15757 0.43084 1.24234 1.41156 1.44990 1.45719 1.52853 1.78464 2.31011 2.54466 2.76281 3.08052 3.38933 3.62844 3.83468 3.91558 3.99240 4.12613 4.16293 4.22509 4.27775 4.32736 4.41791 4.45777 4.49636 4.59495 4.64364 4.70603 4.75709 4.81414 4.96167 5.01222 5.10405 5.17227 5.18536 5.22167 5.30902 5.31778 5.36699 5.46980 5.47555 5.50347 5.58401 5.67509 5.67987 5.84545 6.07438 6.28254 6.50508 6.74609 6.97090 7.30100 8.86437 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032779 B = 0.002109 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.998556 B =13275.997519 C =13804.864923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.135 4.135 3 C -0.044 4.044 4 C -0.141 4.141 5 C -0.097 4.097 6 C -0.150 4.150 7 C 0.523 3.477 8 O -0.551 6.551 9 N -0.660 5.660 10 C 0.180 3.820 11 C -0.172 4.172 12 C -0.057 4.057 13 C -0.232 4.232 14 C 0.134 3.866 15 O -0.335 6.335 16 C 0.083 3.917 17 C 0.028 3.972 18 C -0.547 4.547 19 H 0.071 0.929 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.975 3.025 23 H -0.264 1.264 24 H -0.283 1.283 25 H -0.265 1.265 26 C -0.191 4.191 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.425 0.575 39 H 0.132 0.868 40 H 0.152 0.848 41 H 0.134 0.866 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.000 1.000 45 H -0.002 1.002 46 H 0.267 0.733 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.793 -11.124 6.432 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.153 4.153 3 C -0.047 4.047 4 C -0.198 4.198 5 C -0.135 4.135 6 C -0.207 4.207 7 C 0.312 3.688 8 O -0.427 6.427 9 N -0.306 5.306 10 C 0.086 3.914 11 C -0.193 4.193 12 C -0.076 4.076 13 C -0.251 4.251 14 C 0.087 3.913 15 O -0.250 6.250 16 C 0.009 3.991 17 C -0.009 4.009 18 C -0.584 4.584 19 H 0.089 0.911 20 C -0.197 4.197 21 N -0.569 5.569 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.190 1.190 26 C -0.212 4.212 27 H 0.138 0.862 28 H 0.102 0.898 29 H 0.170 0.830 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.264 0.736 39 H 0.150 0.850 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.019 0.981 45 H 0.017 0.983 46 H 0.075 0.925 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 27.604 -10.844 6.922 30.455 hybrid contribution -1.273 0.566 -0.336 1.433 sum 26.331 -10.278 6.586 29.023 Atomic orbital electron populations 1.24388 0.96701 1.03045 1.00900 1.22901 0.95252 0.97230 0.99917 1.20096 0.94241 0.90246 1.00156 1.21959 0.99654 1.04162 0.93993 1.21338 0.97063 1.00342 0.94746 1.21878 0.98535 0.97314 1.02931 1.21360 0.80503 0.86821 0.80109 1.90714 1.70572 1.45361 1.36096 1.43759 1.36452 1.22368 1.28043 1.17377 0.88984 0.87345 0.97741 1.21067 1.01519 0.91265 1.05405 1.21058 0.91994 0.99274 0.95262 1.21490 0.99232 0.97161 1.07237 1.19101 0.84556 0.94481 0.93117 1.86077 1.23254 1.38075 1.77549 1.22911 0.90999 0.84691 1.00504 1.18964 0.89848 0.96961 0.95114 1.21371 0.99218 0.95549 1.42311 0.91109 1.26033 0.99231 1.00101 0.94352 1.70111 1.17062 1.27995 1.41741 0.85349 0.77244 0.78523 0.79018 1.18828 1.20783 1.18951 1.20108 0.92273 0.98564 1.10261 0.86208 0.89792 0.82978 0.92033 0.88174 0.91176 0.91986 0.93107 0.90759 0.92157 0.91400 0.73579 0.84981 0.83001 0.84782 0.92179 0.91830 0.98116 0.98322 0.92453 0.84149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.03 13.08 67.78 0.89 -2.15 16 2 C -0.14 -1.50 7.98 25.64 0.20 -1.29 16 3 C -0.04 -0.60 0.63 -53.68 -0.03 -0.64 16 4 C -0.14 -1.22 8.00 71.98 0.58 -0.65 16 5 C -0.10 -1.37 4.27 30.59 0.13 -1.24 16 6 C -0.15 -1.18 9.30 71.98 0.67 -0.51 16 7 C 0.52 11.25 5.08 87.66 0.44 11.70 16 8 O -0.55 -16.20 13.67 -3.07 -0.04 -16.24 16 9 N -0.66 -13.52 3.61 -303.53 -1.10 -14.62 16 10 C 0.18 4.88 6.28 38.14 0.24 5.12 16 11 C -0.17 -4.80 8.65 22.41 0.19 -4.61 16 12 C -0.06 -1.56 10.03 22.23 0.22 -1.34 16 13 C -0.23 -7.35 9.04 22.39 0.20 -7.15 16 14 C 0.13 4.75 6.68 22.49 0.15 4.90 16 15 O -0.34 -14.16 10.13 -92.38 -0.94 -15.10 16 16 C 0.08 3.64 4.68 71.98 0.34 3.98 16 17 C 0.03 1.55 5.34 29.85 0.16 1.71 16 18 C -0.55 -30.83 9.11 25.60 0.23 -30.60 16 19 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 20 C 0.00 0.08 5.46 84.65 0.46 0.55 16 21 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 22 Si 0.98 43.51 29.54 68.60 2.03 45.54 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 26 C -0.19 -5.80 9.90 22.49 0.22 -5.58 16 27 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.08 1.61 5.16 -2.91 -0.02 1.60 16 29 H 0.15 0.90 7.00 -2.91 -0.02 0.88 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.43 6.43 -2.38 -0.02 0.42 16 32 H 0.07 0.53 7.69 -2.39 -0.02 0.51 16 33 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 34 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 35 H 0.07 0.38 6.43 -2.38 -0.02 0.37 16 36 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.07 0.42 6.62 -2.39 -0.02 0.40 16 38 H 0.42 6.35 7.48 -92.71 -0.69 5.66 16 39 H 0.13 3.64 6.41 -2.91 -0.02 3.62 16 40 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 41 H 0.13 4.11 6.29 -2.91 -0.02 4.09 16 42 H 0.06 2.49 7.67 -2.39 -0.02 2.47 16 43 H 0.06 2.60 7.65 -2.38 -0.02 2.58 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 Total: -1.00 -71.08 378.89 5.81 -65.27 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.27 Total: 19.17 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 5.30 Total: -27.80 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -0.81 Total: -70.83 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.98 Total: -31.34 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -71.08 5.81 -65.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190761721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.049 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds