Wall clock time and date at job start Tue Mar 31 2020 13:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99792 * 2 1 4 4 C 1.53002 * 109.47296 * 119.99351 * 3 2 1 5 5 C 1.52994 * 109.47029 * 239.99489 * 3 2 1 6 6 C 1.53001 * 109.47043 * 299.99810 * 5 3 2 7 7 C 1.50699 * 109.47128 * 359.97438 * 3 2 1 8 8 O 1.21288 * 120.00094 * 239.99991 * 7 3 2 9 9 N 1.34778 * 120.00053 * 60.00009 * 7 3 2 10 10 C 1.39922 * 119.99827 * 184.63046 * 9 7 3 11 11 C 1.38933 * 120.03819 * 144.94467 * 10 9 7 12 12 C 1.38128 * 120.03626 * 179.97438 * 11 10 9 13 13 C 1.38207 * 120.12671 * 359.97193 * 12 11 10 14 14 C 1.38768 * 120.08746 * 0.04497 * 13 12 11 15 15 O 1.35894 * 120.02280 * 179.97438 * 14 13 12 16 16 C 1.42895 * 117.00301 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47380 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46818 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00341 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99770 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00005 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47200 * 120.00066 * 22 20 18 25 25 H 1.48506 * 109.47054 * 239.99846 * 22 20 18 26 26 C 1.38626 * 119.95755 * 359.96132 * 14 13 12 27 27 H 1.07999 * 120.00144 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.99867 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00144 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47323 * 300.00006 * 4 3 2 31 31 H 1.09003 * 109.46689 * 59.99482 * 4 3 2 32 32 H 1.08994 * 109.47654 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47367 * 60.00317 * 5 3 2 34 34 H 1.09003 * 109.47008 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47181 * 299.99988 * 6 5 3 36 36 H 1.08994 * 109.46831 * 60.00508 * 6 5 3 37 37 H 1.09001 * 109.47004 * 179.97438 * 6 5 3 38 38 H 0.97003 * 120.00378 * 4.63470 * 9 7 3 39 39 H 1.07997 * 119.98363 * 359.97438 * 11 10 9 40 40 H 1.07997 * 119.93514 * 179.97438 * 12 11 10 41 41 H 1.08000 * 119.96055 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.47417 * 300.00744 * 16 15 14 43 43 H 1.09005 * 109.46718 * 59.99737 * 16 15 14 44 44 H 1.08999 * 109.46764 * 300.00001 * 17 16 15 45 45 H 1.08990 * 109.47124 * 60.00266 * 17 16 15 46 46 H 0.97000 * 119.99964 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.06487 * 180.29950 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3863 1.2493 5 6 2.9432 1.3861 -1.2491 6 6 3.9375 0.2233 -1.2490 7 6 1.0842 2.4505 -0.0006 8 8 1.0896 3.2526 -0.9105 9 7 0.2023 2.5837 1.0098 10 6 -0.7699 3.5889 0.9620 11 6 -2.0344 3.3592 1.4898 12 6 -2.9939 4.3517 1.4430 13 6 -2.6990 5.5753 0.8721 14 6 -1.4378 5.8102 0.3430 15 8 -1.1494 7.0137 -0.2185 16 6 -2.1918 7.9910 -0.2295 17 6 -1.6843 9.2706 -0.8973 18 6 -2.7835 10.3014 -0.9083 19 1 -3.7475 10.0675 -0.4813 20 6 -2.5585 11.5432 -1.4635 21 7 -1.3845 11.8282 -1.9830 22 14 -3.9212 12.8208 -1.4778 23 1 -5.1361 12.2558 -0.8373 24 1 -3.4797 14.0239 -0.7278 25 1 -4.2315 13.1979 -2.8803 26 6 -0.4722 4.8166 0.3880 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 2.3163 1.3286 2.1393 31 1 3.6513 0.5578 1.2494 32 1 3.4883 2.3301 1.2492 33 1 2.3166 1.3284 -2.1392 34 1 3.4885 2.3300 -1.2489 35 1 4.5641 0.2811 -0.3589 36 1 3.3925 -0.7207 -1.2490 37 1 4.5639 0.2807 -2.1391 38 1 0.2415 1.9828 1.7703 39 1 -2.2672 2.4041 1.9368 40 1 -3.9764 4.1712 1.8533 41 1 -3.4511 6.3495 0.8373 42 1 -3.0458 7.6051 -0.7862 43 1 -2.4948 8.2105 0.7943 44 1 -0.8302 9.6566 -0.3409 45 1 -1.3817 9.0507 -1.9210 46 1 -1.2260 12.7020 -2.3733 47 1 0.5115 4.9993 -0.0189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190761736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:18 Heat of formation + Delta-G solvation = -37.208306 kcal Electronic energy + Delta-G solvation = -25995.156640 eV Core-core repulsion = 22336.623446 eV Total energy + Delta-G solvation = -3658.533193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23110 -39.53102 -37.57429 -36.61713 -34.74401 -33.33318 -32.38081 -30.85449 -30.16284 -29.34521 -28.79714 -25.75261 -25.02271 -23.43957 -22.25506 -22.15395 -21.55437 -20.31101 -19.21802 -18.13078 -17.00792 -16.50213 -16.29218 -16.11013 -15.58245 -15.36691 -15.25551 -14.87235 -14.62492 -14.36715 -14.20651 -13.89371 -13.36085 -13.16584 -12.88343 -12.69994 -12.54768 -12.41114 -12.30985 -12.12548 -11.92059 -11.77348 -11.62728 -11.41685 -11.20793 -10.93009 -10.82088 -10.79331 -10.54150 -10.21391 -9.82247 -9.79730 -9.74228 -9.61692 -9.25426 -8.43364 -8.24531 -7.80447 -6.07677 -4.12252 1.36578 1.65087 1.82224 2.43180 2.78364 3.28270 3.35130 3.38856 3.83925 3.97841 4.20895 4.25063 4.43653 4.55117 4.64534 4.87142 5.00741 5.01257 5.15509 5.16993 5.20181 5.28676 5.30636 5.38040 5.47366 5.48539 5.55078 5.59011 5.70229 5.76439 5.86214 5.91850 6.04585 6.06149 6.07339 6.16409 6.25846 6.30011 6.38850 6.54434 6.62137 6.77464 6.99622 7.21030 7.54656 7.68087 7.84392 7.93546 8.10401 8.26843 8.93655 9.51860 11.04014 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002385 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.570619 B =11737.933933 C =12700.261985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.146 4.146 3 C -0.048 4.048 4 C -0.142 4.142 5 C -0.099 4.099 6 C -0.154 4.154 7 C 0.520 3.480 8 O -0.503 6.503 9 N -0.671 5.671 10 C 0.173 3.827 11 C -0.196 4.196 12 C -0.062 4.062 13 C -0.225 4.225 14 C 0.163 3.837 15 O -0.312 6.312 16 C 0.065 3.935 17 C 0.024 3.976 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.060 3.940 21 N -0.889 5.889 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.163 4.163 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.410 0.590 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.263 0.737 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.170 -27.810 8.709 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.164 4.164 3 C -0.052 4.052 4 C -0.199 4.199 5 C -0.137 4.137 6 C -0.211 4.211 7 C 0.307 3.693 8 O -0.376 6.376 9 N -0.317 5.317 10 C 0.079 3.921 11 C -0.216 4.216 12 C -0.081 4.081 13 C -0.245 4.245 14 C 0.115 3.885 15 O -0.225 6.225 16 C -0.009 4.009 17 C -0.013 4.013 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.184 4.184 27 H 0.127 0.873 28 H 0.122 0.878 29 H 0.141 0.859 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.247 0.753 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.503 -27.030 7.831 28.883 hybrid contribution -1.022 0.439 0.395 1.180 sum 5.482 -26.591 8.225 28.368 Atomic orbital electron populations 1.24385 0.96234 1.03297 0.99634 1.22726 0.95636 0.96840 1.01178 1.20016 0.94828 0.91288 0.99026 1.21916 0.99551 1.03522 0.94950 1.21368 0.96968 0.99717 0.95645 1.21889 0.98989 0.98140 1.02078 1.20664 0.80854 0.86321 0.81416 1.90785 1.68802 1.42638 1.35375 1.43671 1.31704 1.33217 1.23126 1.17328 0.88262 0.87323 0.99178 1.20626 0.92015 1.00436 1.08543 1.20655 0.98427 0.92166 0.96817 1.21393 0.97200 0.99671 1.06194 1.18990 0.92473 0.86278 0.90754 1.86193 1.42304 1.20392 1.73596 1.23349 0.88678 0.88457 1.00416 1.19135 0.97554 0.88036 0.96563 1.21008 0.98172 0.97677 1.39469 0.92301 1.25000 0.95788 0.98408 0.95071 1.69990 1.21910 1.22141 1.38691 0.86431 0.81868 0.81267 0.77813 1.19644 1.20850 1.20843 1.20415 1.00974 0.90533 1.06451 0.87324 0.87792 0.85891 0.92077 0.90560 0.91428 0.90937 0.90698 0.92281 0.92501 0.92318 0.75299 0.86121 0.85711 0.85059 0.93066 0.93059 0.95384 0.95333 0.92767 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 13.27 29.01 0.39 -1.07 16 2 C -0.15 -0.98 8.01 -36.03 -0.29 -1.27 16 3 C -0.05 -0.40 0.63 -156.81 -0.10 -0.50 16 4 C -0.14 -0.87 8.00 37.16 0.30 -0.57 16 5 C -0.10 -0.87 4.27 -26.73 -0.11 -0.99 16 6 C -0.15 -0.94 9.30 37.16 0.35 -0.59 16 7 C 0.52 6.23 5.18 -10.99 -0.06 6.17 16 8 O -0.50 -8.35 13.42 5.55 0.07 -8.28 16 9 N -0.67 -7.08 3.42 -9.88 -0.03 -7.11 16 10 C 0.17 2.37 6.30 -83.71 -0.53 1.84 16 11 C -0.20 -2.33 9.96 -39.36 -0.39 -2.73 16 12 C -0.06 -0.80 10.03 -39.63 -0.40 -1.20 16 13 C -0.23 -3.61 9.04 -39.40 -0.36 -3.97 16 14 C 0.16 3.06 6.68 -39.24 -0.26 2.80 16 15 O -0.31 -6.88 10.13 -19.41 -0.20 -7.08 16 16 C 0.07 1.45 4.68 37.16 0.17 1.62 16 17 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 18 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 C -0.16 -2.84 8.63 -39.25 -0.34 -3.18 16 27 H 0.11 1.01 5.19 -52.49 -0.27 0.74 16 28 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.12 0.61 7.00 -52.49 -0.37 0.24 16 30 H 0.06 0.30 7.47 -51.93 -0.39 -0.08 16 31 H 0.08 0.34 6.43 -51.93 -0.33 0.01 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 34 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16 36 H 0.06 0.30 6.62 -51.93 -0.34 -0.04 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.41 2.96 7.67 -40.82 -0.31 2.65 16 39 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 2.05 6.29 -52.49 -0.33 1.72 16 42 H 0.05 1.08 7.66 -51.93 -0.40 0.69 16 43 H 0.05 1.07 7.66 -51.93 -0.40 0.67 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.14 2.73 6.23 -52.49 -0.33 2.40 16 LS Contribution 378.64 15.07 5.71 5.71 Total: -1.00 -33.35 378.64 -8.07 -41.42 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -7.15 Total: 1.75 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -2.19 Total: -16.73 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.70 Total: -33.33 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.12 Total: -15.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.35 -8.07 -41.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190761736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.209 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds