Wall clock time and date at job start Tue Mar 31 2020 13:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50701 * 119.99792 * 2 1 4 4 C 1.53002 * 109.47296 * 119.99351 * 3 2 1 5 5 C 1.52994 * 109.47029 * 239.99489 * 3 2 1 6 6 C 1.53001 * 109.47043 * 299.99810 * 5 3 2 7 7 C 1.50699 * 109.47128 * 359.97438 * 3 2 1 8 8 O 1.21288 * 120.00094 * 239.99991 * 7 3 2 9 9 N 1.34778 * 120.00053 * 60.00009 * 7 3 2 10 10 C 1.39922 * 119.99827 * 184.63046 * 9 7 3 11 11 C 1.38933 * 120.03819 * 144.94467 * 10 9 7 12 12 C 1.38128 * 120.03626 * 179.97438 * 11 10 9 13 13 C 1.38207 * 120.12671 * 359.97193 * 12 11 10 14 14 C 1.38768 * 120.08746 * 0.04497 * 13 12 11 15 15 O 1.35894 * 120.02280 * 179.97438 * 14 13 12 16 16 C 1.42895 * 117.00301 * 0.02562 * 15 14 13 17 17 C 1.53001 * 109.47380 * 180.02562 * 16 15 14 18 18 C 1.50701 * 109.46818 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00341 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99770 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99761 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00005 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47115 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47200 * 120.00066 * 22 20 18 25 25 H 1.48506 * 109.47054 * 239.99846 * 22 20 18 26 26 C 1.38626 * 119.95755 * 359.96132 * 14 13 12 27 27 H 1.07999 * 120.00144 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.99867 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00144 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47323 * 300.00006 * 4 3 2 31 31 H 1.09003 * 109.46689 * 59.99482 * 4 3 2 32 32 H 1.08994 * 109.47654 * 179.97438 * 4 3 2 33 33 H 1.09003 * 109.47367 * 60.00317 * 5 3 2 34 34 H 1.09003 * 109.47008 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.47181 * 299.99988 * 6 5 3 36 36 H 1.08994 * 109.46831 * 60.00508 * 6 5 3 37 37 H 1.09001 * 109.47004 * 179.97438 * 6 5 3 38 38 H 0.97003 * 120.00378 * 4.63470 * 9 7 3 39 39 H 1.07997 * 119.98363 * 359.97438 * 11 10 9 40 40 H 1.07997 * 119.93514 * 179.97438 * 12 11 10 41 41 H 1.08000 * 119.96055 * 180.02562 * 13 12 11 42 42 H 1.08999 * 109.47417 * 300.00744 * 16 15 14 43 43 H 1.09005 * 109.46718 * 59.99737 * 16 15 14 44 44 H 1.08999 * 109.46764 * 300.00001 * 17 16 15 45 45 H 1.08990 * 109.47124 * 60.00266 * 17 16 15 46 46 H 0.97000 * 119.99964 * 180.02562 * 21 20 18 47 47 H 1.08002 * 120.06487 * 180.29950 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9430 1.3863 1.2493 5 6 2.9432 1.3861 -1.2491 6 6 3.9375 0.2233 -1.2490 7 6 1.0842 2.4505 -0.0006 8 8 1.0896 3.2526 -0.9105 9 7 0.2023 2.5837 1.0098 10 6 -0.7699 3.5889 0.9620 11 6 -2.0344 3.3592 1.4898 12 6 -2.9939 4.3517 1.4430 13 6 -2.6990 5.5753 0.8721 14 6 -1.4378 5.8102 0.3430 15 8 -1.1494 7.0137 -0.2185 16 6 -2.1918 7.9910 -0.2295 17 6 -1.6843 9.2706 -0.8973 18 6 -2.7835 10.3014 -0.9083 19 1 -3.7475 10.0675 -0.4813 20 6 -2.5585 11.5432 -1.4635 21 7 -1.3845 11.8282 -1.9830 22 14 -3.9212 12.8208 -1.4778 23 1 -5.1361 12.2558 -0.8373 24 1 -3.4797 14.0239 -0.7278 25 1 -4.2315 13.1979 -2.8803 26 6 -0.4722 4.8166 0.3880 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5399 -0.9353 -0.0004 29 1 1.8501 -0.9353 0.0004 30 1 2.3163 1.3286 2.1393 31 1 3.6513 0.5578 1.2494 32 1 3.4883 2.3301 1.2492 33 1 2.3166 1.3284 -2.1392 34 1 3.4885 2.3300 -1.2489 35 1 4.5641 0.2811 -0.3589 36 1 3.3925 -0.7207 -1.2490 37 1 4.5639 0.2807 -2.1391 38 1 0.2415 1.9828 1.7703 39 1 -2.2672 2.4041 1.9368 40 1 -3.9764 4.1712 1.8533 41 1 -3.4511 6.3495 0.8373 42 1 -3.0458 7.6051 -0.7862 43 1 -2.4948 8.2105 0.7943 44 1 -0.8302 9.6566 -0.3409 45 1 -1.3817 9.0507 -1.9210 46 1 -1.2260 12.7020 -2.3733 47 1 0.5115 4.9993 -0.0189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190761736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:17 Heat of formation + Delta-G solvation = -57.145926 kcal Electronic energy + Delta-G solvation = -25996.021200 eV Core-core repulsion = 22336.623446 eV Total energy + Delta-G solvation = -3659.397753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.20141 -40.85169 -38.79031 -37.56409 -35.89233 -35.40330 -32.98972 -32.62490 -31.16208 -30.63340 -29.77687 -27.05554 -26.36034 -24.59525 -23.59618 -23.06388 -22.68750 -21.70681 -20.17012 -19.40811 -18.39004 -17.85248 -17.33027 -17.20434 -16.96627 -16.81543 -16.67688 -16.37457 -15.70009 -15.26140 -15.09203 -14.69028 -14.49417 -14.39812 -14.30655 -14.26084 -13.66840 -13.38729 -13.27671 -13.10094 -12.94904 -12.78626 -12.67451 -12.65859 -12.56527 -12.54061 -12.24303 -11.85421 -11.74890 -11.61291 -11.44296 -11.42141 -11.14146 -10.77394 -10.65590 -10.35727 -9.46513 -9.04997 -8.28684 -6.43168 0.19921 0.45472 1.28954 1.39411 1.41268 1.46438 1.54826 1.84441 2.27990 2.50843 2.78655 3.05597 3.42802 3.63533 3.88838 3.90526 3.99560 4.14105 4.18652 4.22605 4.23683 4.36880 4.42097 4.43748 4.54505 4.56726 4.67802 4.68360 4.73638 4.82125 4.94706 5.03055 5.08735 5.16982 5.23449 5.25421 5.28937 5.30684 5.38068 5.42025 5.47766 5.48850 5.62042 5.66055 5.73672 5.88124 6.04161 6.31037 6.53406 6.71996 7.03200 7.27222 8.85135 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.002385 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.570619 B =11737.933933 C =12700.261985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.138 4.138 3 C -0.043 4.043 4 C -0.141 4.141 5 C -0.101 4.101 6 C -0.147 4.147 7 C 0.515 3.485 8 O -0.560 6.560 9 N -0.654 5.654 10 C 0.175 3.825 11 C -0.173 4.173 12 C -0.052 4.052 13 C -0.233 4.233 14 C 0.122 3.878 15 O -0.347 6.347 16 C 0.085 3.915 17 C 0.027 3.973 18 C -0.544 4.544 19 H 0.074 0.926 20 C -0.002 4.002 21 N -0.934 5.934 22 Si 0.981 3.019 23 H -0.255 1.255 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.188 4.188 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.153 0.847 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.430 0.570 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.133 0.867 42 H 0.061 0.939 43 H 0.066 0.934 44 H -0.004 1.004 45 H -0.007 1.007 46 H 0.267 0.733 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.134 -31.081 11.130 33.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.156 4.156 3 C -0.046 4.046 4 C -0.198 4.198 5 C -0.139 4.139 6 C -0.204 4.204 7 C 0.304 3.696 8 O -0.436 6.436 9 N -0.302 5.302 10 C 0.080 3.920 11 C -0.193 4.193 12 C -0.070 4.070 13 C -0.253 4.253 14 C 0.076 3.924 15 O -0.261 6.261 16 C 0.011 3.989 17 C -0.011 4.011 18 C -0.582 4.582 19 H 0.092 0.908 20 C -0.200 4.200 21 N -0.573 5.573 22 Si 0.804 3.196 23 H -0.178 1.178 24 H -0.201 1.201 25 H -0.203 1.203 26 C -0.209 4.209 27 H 0.105 0.895 28 H 0.143 0.857 29 H 0.171 0.829 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.271 0.729 39 H 0.186 0.814 40 H 0.185 0.815 41 H 0.151 0.849 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.015 0.985 45 H 0.012 0.988 46 H 0.076 0.924 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.469 -30.361 10.302 32.371 hybrid contribution -0.314 1.317 -0.351 1.398 sum 4.155 -29.044 9.951 30.982 Atomic orbital electron populations 1.24409 0.96452 1.03233 1.00113 1.22835 0.95511 0.96595 1.00655 1.20057 0.94184 0.90585 0.99763 1.21970 0.99791 1.03857 0.94196 1.21357 0.97282 1.00103 0.95188 1.21862 0.98427 0.97252 1.02847 1.21526 0.80919 0.86551 0.80599 1.90776 1.70339 1.44896 1.37612 1.43594 1.30671 1.32377 1.23509 1.17483 0.89895 0.86477 0.98149 1.21138 0.90207 1.01902 1.06027 1.21152 1.00347 0.90527 0.94988 1.21539 0.95772 1.01437 1.06512 1.19288 0.94538 0.85310 0.93226 1.86097 1.42590 1.22041 1.75384 1.22902 0.88548 0.86869 1.00615 1.18986 0.96732 0.90759 0.94575 1.21421 0.98822 0.98248 1.39665 0.90784 1.26123 0.98618 1.01030 0.94248 1.70146 1.24518 1.23050 1.39578 0.85171 0.78560 0.77809 0.78107 1.17841 1.20123 1.20265 1.20370 0.99767 0.92423 1.08336 0.89538 0.85702 0.82947 0.90399 0.87990 0.92900 0.93358 0.93018 0.90698 0.90861 0.92455 0.72948 0.81378 0.81500 0.84891 0.92061 0.91624 0.98519 0.98808 0.92423 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.44 13.27 67.78 0.90 -1.54 16 2 C -0.14 -1.46 8.01 25.64 0.21 -1.26 16 3 C -0.04 -0.67 0.63 -53.67 -0.03 -0.70 16 4 C -0.14 -1.44 8.00 71.98 0.58 -0.86 16 5 C -0.10 -1.84 4.27 30.59 0.13 -1.71 16 6 C -0.15 -1.54 9.30 71.98 0.67 -0.87 16 7 C 0.51 12.68 5.18 87.66 0.45 13.13 16 8 O -0.56 -20.33 13.42 -3.06 -0.04 -20.37 16 9 N -0.65 -13.19 3.42 -303.54 -1.04 -14.23 16 10 C 0.17 4.68 6.30 38.14 0.24 4.92 16 11 C -0.17 -3.51 9.96 22.41 0.22 -3.29 16 12 C -0.05 -1.16 10.03 22.24 0.22 -0.94 16 13 C -0.23 -7.36 9.04 22.39 0.20 -7.16 16 14 C 0.12 4.86 6.68 22.49 0.15 5.01 16 15 O -0.35 -16.60 10.13 -92.36 -0.94 -17.54 16 16 C 0.08 3.98 4.68 71.98 0.34 4.32 16 17 C 0.03 1.55 5.34 29.85 0.16 1.71 16 18 C -0.54 -31.73 9.11 25.60 0.23 -31.50 16 19 H 0.07 4.00 7.74 -2.91 -0.02 3.98 16 20 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 21 N -0.93 -58.78 13.29 21.45 0.28 -58.50 16 22 Si 0.98 44.53 29.54 68.60 2.03 46.55 16 23 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 C -0.19 -6.99 8.63 22.49 0.19 -6.80 16 27 H 0.09 1.44 5.19 -2.91 -0.02 1.42 16 28 H 0.12 0.98 8.06 -2.91 -0.02 0.95 16 29 H 0.15 0.80 7.00 -2.91 -0.02 0.78 16 30 H 0.08 0.54 7.47 -2.39 -0.02 0.52 16 31 H 0.10 0.55 6.43 -2.39 -0.02 0.54 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 34 H 0.05 1.14 8.10 -2.39 -0.02 1.13 16 35 H 0.07 0.56 6.43 -2.39 -0.02 0.55 16 36 H 0.07 0.54 6.62 -2.39 -0.02 0.53 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.43 5.04 7.67 -92.71 -0.71 4.33 16 39 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 40 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.13 4.07 6.29 -2.91 -0.02 4.05 16 42 H 0.06 2.69 7.66 -2.39 -0.02 2.67 16 43 H 0.07 2.83 7.66 -2.38 -0.02 2.81 16 44 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 47 H 0.11 4.79 6.23 -2.91 -0.02 4.77 16 Total: -1.00 -80.46 378.64 5.88 -74.58 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: 0.26 Total: 16.68 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 5.33 Total: -27.19 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -0.75 Total: -72.72 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.98 Total: -37.90 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -80.46 5.88 -74.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190761736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.435 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds