Wall clock time and date at job start Tue Mar 31 2020 12:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 C 1.53001 * 109.51203 * 184.66885 * 3 2 1 5 5 C 1.52993 * 109.46959 * 306.36226 * 4 3 2 6 6 C 1.52558 * 109.49456 * 64.60336 * 3 2 1 7 7 C 1.47036 * 114.31756 * 154.98658 * 6 3 2 8 8 C 1.54872 * 110.32267 * 62.84714 * 7 6 3 9 9 N 1.44577 * 109.59948 * 288.72111 * 8 7 6 10 10 S 1.65606 * 118.64189 * 270.71956 * 9 8 7 11 11 O 1.42105 * 104.27629 * 28.05361 * 10 9 8 12 12 O 1.42100 * 104.27665 * 155.91446 * 10 9 8 13 13 C 1.81401 * 104.44761 * 271.98443 * 10 9 8 14 14 C 1.52995 * 109.47074 * 184.82524 * 13 10 9 15 15 C 1.50707 * 109.47241 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99878 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99797 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00318 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47025 * 90.00692 * 19 17 15 21 21 H 1.48497 * 109.47193 * 210.00186 * 19 17 15 22 22 H 1.48500 * 109.47064 * 330.00295 * 19 17 15 23 23 C 1.47608 * 122.71911 * 90.69203 * 9 8 7 24 24 C 1.50891 * 109.48984 * 304.73001 * 3 2 1 25 25 H 1.08997 * 109.46911 * 185.16716 * 1 2 3 26 26 H 1.09000 * 109.46823 * 305.17055 * 1 2 3 27 27 H 1.09004 * 109.46900 * 65.16708 * 1 2 3 28 28 H 1.09006 * 109.46820 * 240.00007 * 2 1 3 29 29 H 1.08994 * 109.47088 * 119.99737 * 2 1 3 30 30 H 1.09003 * 109.46944 * 66.36267 * 4 3 2 31 31 H 1.09003 * 109.47042 * 186.35709 * 4 3 2 32 32 H 1.09002 * 109.47068 * 186.24250 * 5 4 3 33 33 H 1.09000 * 109.46945 * 306.23796 * 5 4 3 34 34 H 1.09001 * 109.47643 * 66.24367 * 5 4 3 35 35 H 1.08995 * 108.51640 * 276.26912 * 6 3 2 36 36 H 1.09009 * 108.51081 * 33.91347 * 6 3 2 37 37 H 1.08992 * 109.35096 * 302.56975 * 7 6 3 38 38 H 1.08997 * 109.30778 * 183.08625 * 7 6 3 39 39 H 1.08991 * 109.45078 * 168.68522 * 8 7 6 40 40 H 1.08995 * 109.45100 * 48.75852 * 8 7 6 41 41 H 1.09001 * 109.47354 * 304.82495 * 13 10 9 42 42 H 1.09005 * 109.46981 * 64.82159 * 13 10 9 43 43 H 1.08999 * 109.47070 * 299.99645 * 14 13 10 44 44 H 1.08991 * 109.47467 * 60.00042 * 14 13 10 45 45 H 0.97005 * 119.99918 * 179.97438 * 18 17 15 46 46 H 1.09008 * 108.94346 * 78.57568 * 23 9 8 47 47 H 1.08996 * 108.95032 * 197.28918 * 23 9 8 48 48 H 1.09000 * 109.36484 * 91.65866 * 24 3 2 49 49 H 1.09001 * 109.26370 * 331.97481 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5655 1.4452 -0.1174 5 6 4.1628 0.5596 0.9780 6 6 1.6282 2.1281 1.2991 7 6 2.4927 3.2508 1.6917 8 6 2.4294 4.3755 0.6289 9 7 3.1164 3.9494 -0.5697 10 16 4.7384 4.2547 -0.7062 11 8 5.2044 4.2795 0.6361 12 8 5.2031 3.2756 -1.6251 13 6 4.8269 5.9107 -1.4414 14 6 6.2873 6.2626 -1.7312 15 6 6.3610 7.6386 -2.3415 16 1 5.4565 8.2052 -2.5066 17 6 7.5829 8.1736 -2.6901 18 7 7.6472 9.3746 -3.2222 19 14 9.1473 7.1933 -2.4053 20 1 9.4431 6.3728 -3.6072 21 1 10.2758 8.1246 -2.1518 22 1 8.9667 6.3031 -1.2304 23 6 2.4320 3.2529 -1.6767 24 6 1.4438 2.1873 -1.1690 25 1 -0.3633 -1.0235 0.0926 26 1 -0.3633 0.5920 0.8401 27 1 -0.3633 0.4316 -0.9327 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8554 1.0594 -1.0948 31 1 3.9369 2.4637 -0.0041 32 1 5.2491 0.6484 0.9649 33 1 3.7840 0.8778 1.9492 34 1 3.8810 -0.4782 0.8002 35 1 0.6091 2.4981 1.1873 36 1 1.6407 1.3885 2.0998 37 1 3.5204 2.8999 1.7849 38 1 2.1597 3.6433 2.6524 39 1 2.9073 5.2730 1.0214 40 1 1.3880 4.5932 0.3924 41 1 4.2580 5.9264 -2.3711 42 1 4.4084 6.6393 -0.7471 43 1 6.8562 6.2470 -0.8016 44 1 6.7058 5.5340 -2.4255 45 1 8.5069 9.7512 -3.4671 46 1 1.8874 3.9853 -2.2727 47 1 3.1790 2.7697 -2.3064 48 1 0.5192 2.6718 -0.8553 49 1 1.2281 1.4826 -1.9721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191259955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:02 Heat of formation + Delta-G solvation = -72.033216 kcal Electronic energy + Delta-G solvation = -27421.599642 eV Core-core repulsion = 23897.000279 eV Total energy + Delta-G solvation = -3524.599363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.67265 -36.83432 -35.83084 -35.48140 -33.96011 -33.03760 -31.80390 -31.45268 -30.45180 -26.17631 -25.85663 -25.68671 -23.16980 -22.87348 -21.51439 -20.91151 -18.48173 -17.95159 -17.54724 -17.02293 -16.57012 -16.13413 -15.31360 -14.96963 -14.79575 -14.47199 -14.38264 -14.12782 -14.00406 -13.60635 -13.24544 -12.91486 -12.79082 -12.54727 -12.48954 -12.00786 -11.96192 -11.88830 -11.84790 -11.74802 -11.66877 -11.40930 -11.28044 -11.24556 -11.15330 -11.00852 -10.83033 -10.65123 -10.44741 -10.33317 -10.24018 -10.13052 -10.00444 -9.67418 -9.38246 -8.66993 -8.54829 -6.17300 -4.18642 0.63403 2.91860 3.26016 3.33295 3.37450 4.14714 4.35204 4.42273 4.47487 4.59608 4.61844 4.86237 4.95283 5.04425 5.09872 5.14380 5.18659 5.22701 5.33003 5.36075 5.43574 5.48266 5.50591 5.57217 5.59117 5.66283 5.68778 5.75749 5.77426 5.86578 5.90876 5.98613 6.00688 6.03841 6.10794 6.16762 6.26724 6.27765 6.31027 6.38662 6.39961 6.55729 6.77439 6.80825 6.93346 7.54002 8.36015 8.83719 9.42369 10.95108 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.003743 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.488854 B = 7478.267205 C = 7669.732570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.049 4.049 4 C -0.126 4.126 5 C -0.155 4.155 6 C -0.101 4.101 7 C -0.148 4.148 8 C 0.128 3.872 9 N -0.995 5.995 10 S 2.585 3.415 11 O -0.961 6.961 12 O -0.961 6.961 13 C -0.589 4.589 14 C -0.006 4.006 15 C -0.520 4.520 16 H 0.078 0.922 17 C 0.072 3.928 18 N -0.896 5.896 19 Si 0.869 3.131 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.262 1.262 23 C 0.111 3.889 24 C -0.113 4.113 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.030 0.970 44 H 0.029 0.971 45 H 0.267 0.733 46 H 0.063 0.937 47 H 0.097 0.903 48 H 0.066 0.934 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.892 -16.912 7.513 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.049 4.049 4 C -0.164 4.164 5 C -0.213 4.213 6 C -0.139 4.139 7 C -0.187 4.187 8 C 0.002 3.998 9 N -0.830 5.830 10 S 2.683 3.317 11 O -0.951 6.951 12 O -0.951 6.951 13 C -0.721 4.721 14 C -0.046 4.046 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.131 4.131 18 N -0.534 5.534 19 Si 0.695 3.305 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.187 1.187 23 C -0.014 4.014 24 C -0.152 4.152 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.139 -17.378 7.715 24.305 hybrid contribution 0.463 0.276 -0.162 0.562 sum -14.676 -17.103 7.553 23.769 Atomic orbital electron populations 1.21842 0.96168 1.01142 1.01928 1.21721 0.95487 0.95868 1.02019 1.20027 0.95575 0.94387 0.94914 1.22231 0.93944 1.00832 0.99401 1.21894 1.00782 0.99445 0.99143 1.20471 0.99167 0.97419 0.96804 1.21386 1.02552 0.96479 0.98330 1.21162 0.98374 0.96485 0.83824 1.57407 1.28921 1.71348 1.25369 1.06059 0.72663 0.77826 0.75108 1.93561 1.78616 1.87901 1.35000 1.93545 1.78598 1.56972 1.66006 1.30363 1.08969 1.20215 1.12576 1.19398 0.87207 0.99985 0.97968 1.20856 0.95101 0.98540 1.41375 0.90421 1.24987 0.99059 0.94844 0.94208 1.69885 1.25813 1.15680 1.41978 0.86929 0.83231 0.80545 0.79793 1.19597 1.20691 1.18659 1.21733 0.97121 0.94682 0.87818 1.21782 0.98040 0.97137 0.98267 0.93294 0.92628 0.92647 0.92036 0.91812 0.91390 0.91866 0.92958 0.92638 0.92934 0.92527 0.92597 0.89829 0.91246 0.90506 0.90526 0.85723 0.85789 0.95189 0.95283 0.92362 0.91892 0.88493 0.91539 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.37 37.16 0.35 -0.75 16 2 C -0.11 -0.96 3.98 -26.73 -0.11 -1.07 16 3 C -0.05 -0.48 0.31 -155.79 -0.05 -0.53 16 4 C -0.13 -1.62 2.54 -26.73 -0.07 -1.69 16 5 C -0.16 -1.88 8.66 37.15 0.32 -1.55 16 6 C -0.10 -0.95 2.83 -29.82 -0.08 -1.04 16 7 C -0.15 -1.62 5.22 -28.60 -0.15 -1.77 16 8 C 0.13 1.42 5.21 -4.08 -0.02 1.39 16 9 N -0.99 -12.74 1.69 -113.31 -0.19 -12.93 16 10 S 2.58 44.31 3.86 -107.50 -0.42 43.89 16 11 O -0.96 -18.41 15.63 -57.54 -0.90 -19.31 16 12 O -0.96 -18.28 15.00 -57.54 -0.86 -19.14 16 13 C -0.59 -11.00 6.12 37.15 0.23 -10.78 16 14 C -0.01 -0.15 4.05 -27.88 -0.11 -0.26 16 15 C -0.52 -14.64 9.66 -34.44 -0.33 -14.98 16 16 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 19 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 23 C 0.11 1.22 5.52 -2.94 -0.02 1.20 16 24 C -0.11 -1.02 3.93 -27.30 -0.11 -1.13 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.39 6.90 -51.93 -0.36 0.03 16 27 H 0.05 0.38 7.03 -51.93 -0.36 0.01 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.54 6.61 -51.93 -0.34 0.20 16 30 H 0.07 0.92 7.63 -51.93 -0.40 0.53 16 31 H 0.06 0.92 1.03 -29.66 -0.03 0.89 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.63 6.18 -51.93 -0.32 0.31 16 34 H 0.05 0.54 6.83 -51.93 -0.35 0.18 16 35 H 0.06 0.47 6.88 -51.93 -0.36 0.11 16 36 H 0.06 0.51 7.36 -51.92 -0.38 0.12 16 37 H 0.08 1.12 4.46 -51.93 -0.23 0.89 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 40 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 42 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 43 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 44 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 45 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 47 H 0.10 1.18 5.96 -51.93 -0.31 0.87 16 48 H 0.07 0.53 7.32 -51.93 -0.38 0.15 16 49 H 0.07 0.60 7.34 -51.93 -0.38 0.22 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -32.59 356.60 -9.48 -42.07 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.34 Total: 0.48 kcal Atomic # 6 Polarization: -30.72 SS G_CDS: -0.25 Total: -30.97 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.58 Total: -39.31 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -1.76 Total: -38.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 44.31 SS G_CDS: -0.42 Total: 43.89 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.59 -9.48 -42.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191259955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.963 kcal (2) G-P(sol) polarization free energy of solvation -32.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds