Wall clock time and date at job start Tue Mar 31 2020 12:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47150 * 2 1 4 4 C 1.53001 * 109.51203 * 184.66885 * 3 2 1 5 5 C 1.52993 * 109.46959 * 306.36226 * 4 3 2 6 6 C 1.52558 * 109.49456 * 64.60336 * 3 2 1 7 7 C 1.47036 * 114.31756 * 154.98658 * 6 3 2 8 8 C 1.54872 * 110.32267 * 62.84714 * 7 6 3 9 9 N 1.44577 * 109.59948 * 288.72111 * 8 7 6 10 10 S 1.65606 * 118.64189 * 270.71956 * 9 8 7 11 11 O 1.42105 * 104.27629 * 28.05361 * 10 9 8 12 12 O 1.42100 * 104.27665 * 155.91446 * 10 9 8 13 13 C 1.81401 * 104.44761 * 271.98443 * 10 9 8 14 14 C 1.52995 * 109.47074 * 184.82524 * 13 10 9 15 15 C 1.50707 * 109.47241 * 180.02562 * 14 13 10 16 16 H 1.08002 * 119.99878 * 359.97438 * 15 14 13 17 17 C 1.37869 * 119.99924 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99797 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 120.00318 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.47025 * 90.00692 * 19 17 15 21 21 H 1.48497 * 109.47193 * 210.00186 * 19 17 15 22 22 H 1.48500 * 109.47064 * 330.00295 * 19 17 15 23 23 C 1.47608 * 122.71911 * 90.69203 * 9 8 7 24 24 C 1.50891 * 109.48984 * 304.73001 * 3 2 1 25 25 H 1.08997 * 109.46911 * 185.16716 * 1 2 3 26 26 H 1.09000 * 109.46823 * 305.17055 * 1 2 3 27 27 H 1.09004 * 109.46900 * 65.16708 * 1 2 3 28 28 H 1.09006 * 109.46820 * 240.00007 * 2 1 3 29 29 H 1.08994 * 109.47088 * 119.99737 * 2 1 3 30 30 H 1.09003 * 109.46944 * 66.36267 * 4 3 2 31 31 H 1.09003 * 109.47042 * 186.35709 * 4 3 2 32 32 H 1.09002 * 109.47068 * 186.24250 * 5 4 3 33 33 H 1.09000 * 109.46945 * 306.23796 * 5 4 3 34 34 H 1.09001 * 109.47643 * 66.24367 * 5 4 3 35 35 H 1.08995 * 108.51640 * 276.26912 * 6 3 2 36 36 H 1.09009 * 108.51081 * 33.91347 * 6 3 2 37 37 H 1.08992 * 109.35096 * 302.56975 * 7 6 3 38 38 H 1.08997 * 109.30778 * 183.08625 * 7 6 3 39 39 H 1.08991 * 109.45078 * 168.68522 * 8 7 6 40 40 H 1.08995 * 109.45100 * 48.75852 * 8 7 6 41 41 H 1.09001 * 109.47354 * 304.82495 * 13 10 9 42 42 H 1.09005 * 109.46981 * 64.82159 * 13 10 9 43 43 H 1.08999 * 109.47070 * 299.99645 * 14 13 10 44 44 H 1.08991 * 109.47467 * 60.00042 * 14 13 10 45 45 H 0.97005 * 119.99918 * 179.97438 * 18 17 15 46 46 H 1.09008 * 108.94346 * 78.57568 * 23 9 8 47 47 H 1.08996 * 108.95032 * 197.28918 * 23 9 8 48 48 H 1.09000 * 109.36484 * 91.65866 * 24 3 2 49 49 H 1.09001 * 109.26370 * 331.97481 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5655 1.4452 -0.1174 5 6 4.1628 0.5596 0.9780 6 6 1.6282 2.1281 1.2991 7 6 2.4927 3.2508 1.6917 8 6 2.4294 4.3755 0.6289 9 7 3.1164 3.9494 -0.5697 10 16 4.7384 4.2547 -0.7062 11 8 5.2044 4.2795 0.6361 12 8 5.2031 3.2756 -1.6251 13 6 4.8269 5.9107 -1.4414 14 6 6.2873 6.2626 -1.7312 15 6 6.3610 7.6386 -2.3415 16 1 5.4565 8.2052 -2.5066 17 6 7.5829 8.1736 -2.6901 18 7 7.6472 9.3746 -3.2222 19 14 9.1473 7.1933 -2.4053 20 1 9.4431 6.3728 -3.6072 21 1 10.2758 8.1246 -2.1518 22 1 8.9667 6.3031 -1.2304 23 6 2.4320 3.2529 -1.6767 24 6 1.4438 2.1873 -1.1690 25 1 -0.3633 -1.0235 0.0926 26 1 -0.3633 0.5920 0.8401 27 1 -0.3633 0.4316 -0.9327 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8554 1.0594 -1.0948 31 1 3.9369 2.4637 -0.0041 32 1 5.2491 0.6484 0.9649 33 1 3.7840 0.8778 1.9492 34 1 3.8810 -0.4782 0.8002 35 1 0.6091 2.4981 1.1873 36 1 1.6407 1.3885 2.0998 37 1 3.5204 2.8999 1.7849 38 1 2.1597 3.6433 2.6524 39 1 2.9073 5.2730 1.0214 40 1 1.3880 4.5932 0.3924 41 1 4.2580 5.9264 -2.3711 42 1 4.4084 6.6393 -0.7471 43 1 6.8562 6.2470 -0.8016 44 1 6.7058 5.5340 -2.4255 45 1 8.5069 9.7512 -3.4671 46 1 1.8874 3.9853 -2.2727 47 1 3.1790 2.7697 -2.3064 48 1 0.5192 2.6718 -0.8553 49 1 1.2281 1.4826 -1.9721 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191259955.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:01 Heat of formation + Delta-G solvation = -92.417450 kcal Electronic energy + Delta-G solvation = -27422.483569 eV Core-core repulsion = 23897.000279 eV Total energy + Delta-G solvation = -3525.483290 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.49307 -38.26230 -37.09106 -36.53849 -35.93151 -33.84929 -33.51904 -32.60078 -31.21278 -27.94183 -26.86180 -26.47644 -24.09363 -23.58100 -23.19121 -22.04003 -19.81703 -19.25696 -18.67972 -18.49006 -17.57942 -17.46998 -16.55513 -16.43188 -15.94819 -15.67221 -15.35668 -15.21145 -15.00118 -14.84140 -14.78131 -14.08068 -13.85404 -13.73360 -13.49663 -13.36847 -13.18807 -13.09485 -13.08556 -12.99132 -12.79462 -12.63359 -12.57053 -12.27514 -12.22922 -12.11071 -12.01498 -11.89096 -11.75857 -11.65993 -11.51942 -11.14023 -11.10013 -10.94869 -10.87386 -10.80543 -9.54391 -8.39623 -6.45702 -0.73960 1.29396 1.30960 1.41273 1.72306 2.26792 2.78619 2.93888 3.16294 3.57402 3.79151 3.88829 3.89617 4.00754 4.04017 4.18622 4.26521 4.33674 4.41841 4.46459 4.51396 4.57101 4.61966 4.65079 4.72791 4.77427 4.89805 4.93660 4.98203 5.03552 5.04371 5.07171 5.11736 5.16908 5.20679 5.26284 5.29585 5.31821 5.39769 5.43369 5.46316 5.47942 5.60887 5.66374 5.71415 5.87333 6.13702 6.59962 7.18876 8.76015 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.003743 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.488854 B = 7478.267205 C = 7669.732570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.111 4.111 3 C -0.047 4.047 4 C -0.133 4.133 5 C -0.155 4.155 6 C -0.100 4.100 7 C -0.150 4.150 8 C 0.117 3.883 9 N -0.981 5.981 10 S 2.608 3.392 11 O -0.983 6.983 12 O -0.982 6.982 13 C -0.598 4.598 14 C -0.015 4.015 15 C -0.530 4.530 16 H 0.049 0.951 17 C 0.015 3.985 18 N -0.938 5.938 19 Si 0.924 3.076 20 H -0.259 1.259 21 H -0.271 1.271 22 H -0.252 1.252 23 C 0.101 3.899 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.027 0.973 44 H 0.030 0.970 45 H 0.271 0.729 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.968 -18.589 8.229 27.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.047 4.047 4 C -0.171 4.171 5 C -0.212 4.212 6 C -0.137 4.137 7 C -0.189 4.189 8 C -0.009 4.009 9 N -0.819 5.819 10 S 2.705 3.295 11 O -0.973 6.973 12 O -0.973 6.973 13 C -0.728 4.728 14 C -0.054 4.054 15 C -0.568 4.568 16 H 0.067 0.933 17 C -0.184 4.184 18 N -0.578 5.578 19 Si 0.746 3.254 20 H -0.183 1.183 21 H -0.196 1.196 22 H -0.176 1.176 23 C -0.022 4.022 24 C -0.148 4.148 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.128 0.872 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.046 0.954 44 H 0.048 0.952 45 H 0.080 0.920 46 H 0.104 0.896 47 H 0.098 0.902 48 H 0.107 0.893 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.208 -19.041 8.424 27.012 hybrid contribution 1.015 0.795 -0.374 1.343 sum -16.193 -18.246 8.049 25.689 Atomic orbital electron populations 1.21812 0.94713 1.01703 1.02463 1.21681 0.96656 0.94710 1.01776 1.20034 0.93266 0.95641 0.95748 1.22274 0.96520 0.99731 0.98607 1.21896 0.99406 1.00478 0.99429 1.20463 0.99803 0.96925 0.96510 1.21401 1.01288 0.97042 0.99142 1.21476 0.99851 0.96487 0.83037 1.57070 1.27239 1.71068 1.26532 1.05153 0.73932 0.76426 0.73996 1.93526 1.80063 1.87817 1.35895 1.93512 1.80008 1.57091 1.66653 1.30405 1.05718 1.22700 1.14012 1.19340 0.90970 0.97671 0.97406 1.21173 0.94196 1.00278 1.41192 0.93254 1.25868 1.02628 0.95843 0.94059 1.70007 1.26935 1.17405 1.43457 0.86043 0.79321 0.79555 0.80455 1.18336 1.19563 1.17604 1.22000 0.97165 0.95779 0.87306 1.21816 0.97965 0.96702 0.98307 0.92824 0.92127 0.92011 0.92433 0.92031 0.92946 0.93528 0.95074 0.92059 0.91305 0.90328 0.92200 0.92753 0.89680 0.90859 0.87158 0.84400 0.84694 0.95428 0.95161 0.92011 0.89628 0.90185 0.89337 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.37 71.98 0.67 -0.92 16 2 C -0.11 -1.58 3.98 30.60 0.12 -1.46 16 3 C -0.05 -0.80 0.31 -53.01 -0.02 -0.82 16 4 C -0.13 -3.31 2.54 30.59 0.08 -3.24 16 5 C -0.15 -3.69 8.66 71.98 0.62 -3.06 16 6 C -0.10 -1.55 2.83 28.59 0.08 -1.47 16 7 C -0.15 -2.93 5.22 29.38 0.15 -2.78 16 8 C 0.12 2.29 5.21 87.38 0.46 2.75 16 9 N -0.98 -23.45 1.69 -512.39 -0.87 -24.32 16 10 S 2.61 88.60 3.86 -56.49 -0.22 88.38 16 11 O -0.98 -37.78 15.63 -127.65 -2.00 -39.77 16 12 O -0.98 -37.55 15.00 -127.65 -1.91 -39.46 16 13 C -0.60 -22.28 6.12 71.98 0.44 -21.84 16 14 C -0.01 -0.72 4.05 29.85 0.12 -0.60 16 15 C -0.53 -30.50 9.66 25.60 0.25 -30.25 16 16 H 0.05 3.02 7.99 -2.91 -0.02 3.00 16 17 C 0.01 0.87 5.47 84.65 0.46 1.33 16 18 N -0.94 -58.12 13.96 21.45 0.30 -57.82 16 19 Si 0.92 44.44 27.47 68.60 1.88 46.32 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.25 -11.63 6.54 99.48 0.65 -10.97 16 23 C 0.10 1.99 5.52 86.49 0.48 2.47 16 24 C -0.11 -1.60 3.93 30.23 0.12 -1.48 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.60 6.90 -2.39 -0.02 0.58 16 27 H 0.06 0.59 7.03 -2.38 -0.02 0.57 16 28 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.06 0.90 6.61 -2.39 -0.02 0.89 16 30 H 0.05 1.42 7.63 -2.39 -0.02 1.41 16 31 H 0.05 1.33 1.03 -19.16 -0.02 1.31 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.35 6.18 -2.39 -0.01 1.34 16 34 H 0.07 1.36 6.83 -2.39 -0.02 1.34 16 35 H 0.08 0.91 6.88 -2.39 -0.02 0.90 16 36 H 0.06 0.90 7.36 -2.38 -0.02 0.88 16 37 H 0.05 1.41 4.46 -2.39 -0.01 1.40 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.50 7.73 -2.39 -0.02 1.48 16 40 H 0.11 1.46 8.07 -2.39 -0.02 1.44 16 41 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 42 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 43 H 0.03 1.33 7.20 -2.39 -0.02 1.31 16 44 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 45 H 0.27 15.57 8.31 -92.70 -0.77 14.80 16 46 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 47 H 0.08 1.87 5.96 -2.39 -0.01 1.86 16 48 H 0.09 0.95 7.32 -2.39 -0.02 0.94 16 49 H 0.09 1.10 7.34 -2.39 -0.02 1.08 16 Total: -1.00 -72.04 356.60 2.08 -69.96 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.85 Total: 18.09 kcal Atomic # 6 Polarization: -65.41 SS G_CDS: 4.04 Total: -61.38 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -0.57 Total: -82.14 kcal Atomic # 8 Polarization: -75.33 SS G_CDS: -3.91 Total: -79.24 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: 88.60 SS G_CDS: -0.22 Total: 88.38 kcal Total: -72.04 2.08 -69.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191259955.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.454 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds