Wall clock time and date at job start Tue Mar 31 2020 13:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47209 * 2 1 4 4 C 1.53008 * 109.46766 * 60.00049 * 3 2 1 5 5 C 1.52996 * 109.47174 * 300.00471 * 3 2 1 6 6 C 1.52994 * 109.47329 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47276 * 180.02562 * 6 3 2 8 8 C 1.34780 * 120.00062 * 179.73016 * 7 6 3 9 9 O 1.21718 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.46256 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.35022 * 119.99894 * 179.97438 * 10 8 7 12 12 C 1.46957 * 120.00300 * 180.02562 * 11 10 8 13 13 C 1.40029 * 120.09915 * 359.72225 * 12 11 10 14 14 C 1.37601 * 119.89798 * 179.69970 * 13 12 11 15 15 C 1.39180 * 120.09887 * 0.60088 * 14 13 12 16 16 O 1.35565 * 119.89376 * 179.69676 * 15 14 13 17 17 C 1.34792 * 116.99720 * 174.42235 * 16 15 14 18 18 H 1.07998 * 119.99415 * 5.05109 * 17 16 15 19 19 C 1.38711 * 120.00019 * 185.05884 * 17 16 15 20 20 N 1.31506 * 120.00201 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00134 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 90.00207 * 21 19 17 23 23 H 1.48497 * 109.46872 * 210.00189 * 21 19 17 24 24 H 1.48501 * 109.47001 * 330.00012 * 21 19 17 25 25 C 1.39171 * 120.20408 * 359.67315 * 15 14 13 26 26 C 1.37600 * 120.10110 * 0.02662 * 25 15 14 27 27 H 1.08999 * 109.46988 * 299.99699 * 1 2 3 28 28 H 1.08996 * 109.47045 * 59.99889 * 1 2 3 29 29 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46988 * 240.00301 * 2 1 3 31 31 H 1.09000 * 109.47483 * 120.00261 * 2 1 3 32 32 H 1.09002 * 109.46658 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46989 * 300.00208 * 4 3 2 34 34 H 1.09000 * 109.46947 * 60.00339 * 4 3 2 35 35 H 1.08999 * 109.47024 * 299.99700 * 5 3 2 36 36 H 1.09004 * 109.47676 * 59.99936 * 5 3 2 37 37 H 1.09002 * 109.47500 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.46934 * 60.00261 * 6 3 2 39 39 H 1.09000 * 109.47417 * 300.00294 * 6 3 2 40 40 H 0.97000 * 119.99935 * 359.97438 * 7 6 3 41 41 H 1.08004 * 120.00191 * 359.97438 * 10 8 7 42 42 H 1.08004 * 119.99907 * 359.97438 * 11 10 8 43 43 H 1.08004 * 120.05337 * 359.97438 * 13 12 11 44 44 H 1.07999 * 119.94808 * 180.27028 * 14 13 12 45 45 H 0.96998 * 120.00257 * 179.97438 * 20 19 17 46 46 H 1.08001 * 119.94985 * 180.02562 * 25 15 14 47 47 H 1.07997 * 120.05103 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2491 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8237 0.0000 8 6 5.3834 3.0700 0.0051 9 8 6.1744 2.1448 0.0096 10 6 5.8709 4.4489 0.0051 11 6 7.1984 4.6957 0.0107 12 6 7.6883 6.0812 0.0113 13 6 6.7802 7.1471 0.0002 14 6 7.2434 8.4428 0.0071 15 6 8.6122 8.6947 0.0125 16 8 9.0640 9.9728 0.0130 17 6 10.3945 10.1515 0.1350 18 1 11.0553 9.2973 0.1445 19 6 10.9147 11.4323 0.2485 20 7 12.2127 11.6066 0.3680 21 14 9.7716 12.9097 0.2316 22 1 9.3506 13.2257 1.6202 23 1 10.4814 14.0780 -0.3485 24 1 8.5743 12.5997 -0.5903 25 6 9.5185 7.6385 0.0177 26 6 9.0644 6.3395 0.0171 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8930 3.1915 1.2491 33 1 0.4400 2.1636 1.2493 34 1 1.8934 1.6498 2.1393 35 1 1.8933 1.6500 -2.1392 36 1 0.4399 2.1638 -1.2492 37 1 1.8929 3.1916 -1.2490 38 1 3.9329 0.9288 -0.8909 39 1 3.9338 0.9285 0.8891 40 1 3.4280 3.5609 0.0003 41 1 5.1690 5.2698 0.0007 42 1 7.9002 3.8748 0.0156 43 1 5.7179 6.9526 -0.0092 44 1 6.5438 9.2655 0.0030 45 1 12.5765 12.5023 0.4470 46 1 10.5798 7.8386 0.0223 47 1 9.7684 5.5205 0.0216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192192627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:55 Heat of formation + Delta-G solvation = -44.546873 kcal Electronic energy + Delta-G solvation = -24878.563209 eV Core-core repulsion = 21219.711791 eV Total energy + Delta-G solvation = -3658.851417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.95781 -39.33514 -38.24710 -37.02340 -34.09106 -33.22853 -32.46077 -30.55971 -30.46348 -28.62931 -27.71402 -27.05590 -25.61069 -24.08156 -22.59505 -22.23523 -20.70816 -19.59941 -18.87803 -18.06285 -17.44780 -17.13265 -15.99529 -15.57487 -15.39131 -14.98594 -14.91176 -14.71039 -14.21876 -14.05772 -13.96505 -13.85119 -13.83194 -13.47373 -12.84606 -12.63658 -12.56529 -12.45388 -12.40946 -12.37003 -12.17474 -11.86888 -11.79612 -11.54828 -11.21420 -11.02582 -11.02305 -10.94275 -10.87407 -10.76159 -10.27716 -9.81120 -9.65195 -9.54689 -9.12150 -8.90568 -8.46827 -7.23786 -6.60170 -4.24077 1.00235 2.03512 2.48920 3.11753 3.15624 3.23021 3.28839 3.54887 4.08827 4.25819 4.36838 4.37558 4.43373 4.63380 4.85836 4.90418 4.94093 4.94926 5.06702 5.17162 5.20526 5.24669 5.37673 5.40844 5.43417 5.53889 5.55805 5.56496 5.60265 5.61493 5.68837 5.70971 5.74195 5.94258 5.98970 6.02203 6.02896 6.29487 6.35644 6.46482 6.53589 6.67817 6.93169 7.09138 7.16760 7.41956 7.53454 7.63010 7.84324 8.33237 8.73160 9.33377 10.46104 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.001851 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.192527 B =15120.742357 C =15772.987534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.078 4.078 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.131 3.869 7 N -0.731 5.731 8 C 0.553 3.447 9 O -0.559 6.559 10 C -0.278 4.278 11 C 0.034 3.966 12 C -0.189 4.189 13 C -0.046 4.046 14 C -0.199 4.199 15 C 0.173 3.827 16 O -0.203 6.203 17 C -0.392 4.392 18 H 0.111 0.889 19 C 0.066 3.934 20 N -0.867 5.867 21 Si 0.907 3.093 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.258 1.258 25 C -0.230 4.230 26 C -0.037 4.037 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.283 0.717 46 H 0.137 0.863 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.493 -17.090 -0.664 27.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.078 4.078 4 C -0.202 4.202 5 C -0.202 4.202 6 C 0.007 3.993 7 N -0.383 5.383 8 C 0.345 3.655 9 O -0.439 6.439 10 C -0.299 4.299 11 C 0.015 3.985 12 C -0.190 4.190 13 C -0.064 4.064 14 C -0.219 4.219 15 C 0.119 3.881 16 O -0.105 6.105 17 C -0.467 4.467 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.503 5.503 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.182 1.182 25 C -0.249 4.249 26 C -0.055 4.055 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.234 0.766 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.093 0.907 46 H 0.155 0.845 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.839 -17.339 -0.660 27.117 hybrid contribution -0.486 1.034 0.025 1.143 sum -21.324 -16.304 -0.634 26.850 Atomic orbital electron populations 1.21877 0.95566 1.01625 1.02156 1.21498 0.96190 0.94879 1.02390 1.20828 0.94018 0.96502 0.96450 1.21946 1.01269 1.00227 0.96786 1.21945 1.01267 1.00227 0.96787 1.21323 0.92374 0.83452 1.02137 1.45906 1.07197 1.08470 1.76763 1.18405 0.81743 0.89868 0.75468 1.90779 1.55411 1.46624 1.51103 1.22473 0.96946 0.94548 1.15887 1.22300 0.95181 0.95137 0.85924 1.18532 0.93427 0.91772 1.15249 1.20883 0.98319 0.91286 0.95899 1.20145 0.92715 0.96834 1.12173 1.19361 0.92585 0.84351 0.91836 1.83505 1.26799 1.22394 1.77852 1.20878 0.78092 0.96224 1.51501 0.87197 1.24533 0.95991 0.98226 0.95156 1.69614 1.10810 1.24369 1.45477 0.86159 0.80882 0.80403 0.79393 1.19648 1.20519 1.18212 1.21222 1.00956 0.92002 1.10684 1.21046 0.93999 0.96124 0.94379 0.92358 0.92353 0.92826 0.91675 0.91673 0.92554 0.91998 0.92370 0.92373 0.92004 0.92554 0.91691 0.91693 0.76601 0.85950 0.85776 0.86270 0.86134 0.90663 0.84498 0.86519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.75 9.21 37.16 0.34 -0.41 16 2 C -0.11 -0.63 4.99 -26.73 -0.13 -0.77 16 3 C -0.08 -0.49 0.56 -154.51 -0.09 -0.57 16 4 C -0.15 -0.86 7.95 37.16 0.30 -0.56 16 5 C -0.15 -0.85 7.95 37.16 0.30 -0.56 16 6 C 0.13 1.18 4.56 -4.05 -0.02 1.16 16 7 N -0.73 -7.30 4.95 -61.76 -0.31 -7.60 16 8 C 0.55 7.60 7.74 -13.04 -0.10 7.50 16 9 O -0.56 -9.74 16.23 5.17 0.08 -9.65 16 10 C -0.28 -3.65 9.41 -37.50 -0.35 -4.00 16 11 C 0.03 0.51 9.45 -37.20 -0.35 0.16 16 12 C -0.19 -3.10 5.87 -105.03 -0.62 -3.72 16 13 C -0.05 -0.73 9.40 -39.14 -0.37 -1.10 16 14 C -0.20 -3.69 9.97 -39.46 -0.39 -4.09 16 15 C 0.17 3.78 6.66 -38.89 -0.26 3.52 16 16 O -0.20 -5.06 8.57 0.73 0.01 -5.06 16 17 C -0.39 -10.52 9.94 30.91 0.31 -10.21 16 18 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 19 C 0.07 1.77 5.49 -17.52 -0.10 1.68 16 20 N -0.87 -23.94 13.96 55.48 0.77 -23.17 16 21 Si 0.91 20.60 28.62 -169.99 -4.86 15.74 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 25 C -0.23 -4.70 9.14 -39.47 -0.36 -5.06 16 26 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 27 H 0.06 0.27 6.43 -51.93 -0.33 -0.06 16 28 H 0.06 0.27 6.43 -51.93 -0.33 -0.06 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.33 6.86 -51.93 -0.36 -0.02 16 33 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.31 6.43 -51.93 -0.33 -0.02 16 37 H 0.06 0.33 6.86 -51.93 -0.36 -0.02 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.40 3.07 6.14 -40.82 -0.25 2.82 16 41 H 0.12 1.34 6.07 -52.48 -0.32 1.03 16 42 H 0.12 1.85 7.52 -52.48 -0.39 1.46 16 43 H 0.12 1.52 6.16 -52.48 -0.32 1.20 16 44 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 45 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.14 2.93 5.62 -52.49 -0.29 2.63 16 47 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 379.50 15.07 5.72 5.72 Total: -1.00 -29.71 379.50 -7.72 -37.43 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.85 Total: 4.66 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.28 Total: -18.06 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.47 Total: -30.77 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.09 Total: -14.71 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.86 Total: 15.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.71 -7.72 -37.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192192627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds