Wall clock time and date at job start Tue Mar 31 2020 13:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47209 * 2 1 4 4 C 1.53008 * 109.46766 * 60.00049 * 3 2 1 5 5 C 1.52996 * 109.47174 * 300.00471 * 3 2 1 6 6 C 1.52994 * 109.47329 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47276 * 180.02562 * 6 3 2 8 8 C 1.34780 * 120.00062 * 179.73016 * 7 6 3 9 9 O 1.21718 * 119.99957 * 359.97438 * 8 7 6 10 10 C 1.46256 * 119.99800 * 179.97438 * 8 7 6 11 11 C 1.35022 * 119.99894 * 179.97438 * 10 8 7 12 12 C 1.46957 * 120.00300 * 180.02562 * 11 10 8 13 13 C 1.40029 * 120.09915 * 359.72225 * 12 11 10 14 14 C 1.37601 * 119.89798 * 179.69970 * 13 12 11 15 15 C 1.39180 * 120.09887 * 0.60088 * 14 13 12 16 16 O 1.35565 * 119.89376 * 179.69676 * 15 14 13 17 17 C 1.34792 * 116.99720 * 174.42235 * 16 15 14 18 18 H 1.07998 * 119.99415 * 5.05109 * 17 16 15 19 19 C 1.38711 * 120.00019 * 185.05884 * 17 16 15 20 20 N 1.31506 * 120.00201 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 120.00134 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47190 * 90.00207 * 21 19 17 23 23 H 1.48497 * 109.46872 * 210.00189 * 21 19 17 24 24 H 1.48501 * 109.47001 * 330.00012 * 21 19 17 25 25 C 1.39171 * 120.20408 * 359.67315 * 15 14 13 26 26 C 1.37600 * 120.10110 * 0.02662 * 25 15 14 27 27 H 1.08999 * 109.46988 * 299.99699 * 1 2 3 28 28 H 1.08996 * 109.47045 * 59.99889 * 1 2 3 29 29 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46988 * 240.00301 * 2 1 3 31 31 H 1.09000 * 109.47483 * 120.00261 * 2 1 3 32 32 H 1.09002 * 109.46658 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.46989 * 300.00208 * 4 3 2 34 34 H 1.09000 * 109.46947 * 60.00339 * 4 3 2 35 35 H 1.08999 * 109.47024 * 299.99700 * 5 3 2 36 36 H 1.09004 * 109.47676 * 59.99936 * 5 3 2 37 37 H 1.09002 * 109.47500 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.46934 * 60.00261 * 6 3 2 39 39 H 1.09000 * 109.47417 * 300.00294 * 6 3 2 40 40 H 0.97000 * 119.99935 * 359.97438 * 7 6 3 41 41 H 1.08004 * 120.00191 * 359.97438 * 10 8 7 42 42 H 1.08004 * 119.99907 * 359.97438 * 11 10 8 43 43 H 1.08004 * 120.05337 * 359.97438 * 13 12 11 44 44 H 1.07999 * 119.94808 * 180.27028 * 14 13 12 45 45 H 0.96998 * 120.00257 * 179.97438 * 20 19 17 46 46 H 1.08001 * 119.94985 * 180.02562 * 25 15 14 47 47 H 1.07997 * 120.05103 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1637 -1.2491 6 6 3.5700 1.4425 -0.0006 7 7 4.0583 2.8237 0.0000 8 6 5.3834 3.0700 0.0051 9 8 6.1744 2.1448 0.0096 10 6 5.8709 4.4489 0.0051 11 6 7.1984 4.6957 0.0107 12 6 7.6883 6.0812 0.0113 13 6 6.7802 7.1471 0.0002 14 6 7.2434 8.4428 0.0071 15 6 8.6122 8.6947 0.0125 16 8 9.0640 9.9728 0.0130 17 6 10.3945 10.1515 0.1350 18 1 11.0553 9.2973 0.1445 19 6 10.9147 11.4323 0.2485 20 7 12.2127 11.6066 0.3680 21 14 9.7716 12.9097 0.2316 22 1 9.3506 13.2257 1.6202 23 1 10.4814 14.0780 -0.3485 24 1 8.5743 12.5997 -0.5903 25 6 9.5185 7.6385 0.0177 26 6 9.0644 6.3395 0.0171 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.8930 3.1915 1.2491 33 1 0.4400 2.1636 1.2493 34 1 1.8934 1.6498 2.1393 35 1 1.8933 1.6500 -2.1392 36 1 0.4399 2.1638 -1.2492 37 1 1.8929 3.1916 -1.2490 38 1 3.9329 0.9288 -0.8909 39 1 3.9338 0.9285 0.8891 40 1 3.4280 3.5609 0.0003 41 1 5.1690 5.2698 0.0007 42 1 7.9002 3.8748 0.0156 43 1 5.7179 6.9526 -0.0092 44 1 6.5438 9.2655 0.0030 45 1 12.5765 12.5023 0.4470 46 1 10.5798 7.8386 0.0223 47 1 9.7684 5.5205 0.0216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192192627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:54 Heat of formation + Delta-G solvation = -61.006909 kcal Electronic energy + Delta-G solvation = -24879.276969 eV Core-core repulsion = 21219.711791 eV Total energy + Delta-G solvation = -3659.565178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.05348 -40.79557 -39.06174 -38.51684 -34.98631 -34.76187 -34.17539 -32.00888 -31.08422 -29.91446 -28.16842 -27.96007 -27.26819 -24.98017 -23.86227 -23.50334 -21.92853 -20.78995 -19.88735 -19.36502 -19.12628 -18.26909 -17.04700 -16.56761 -16.49650 -16.37172 -15.79660 -15.73107 -15.56577 -15.53429 -15.30393 -14.93048 -14.57637 -14.40823 -14.28152 -14.24824 -14.05372 -13.40472 -13.19139 -13.06421 -12.99843 -12.81557 -12.72756 -12.65142 -12.63351 -12.35621 -12.00721 -11.93829 -11.59621 -11.39896 -11.36857 -11.30804 -11.15789 -10.96033 -10.67637 -10.05227 -9.91832 -8.73952 -8.53600 -6.25559 -0.27918 0.55019 1.10984 1.32633 1.37516 1.52458 2.26297 2.30318 2.36614 2.80438 3.00549 3.15256 3.68958 3.80064 3.85084 3.89593 3.92768 4.04711 4.28857 4.33756 4.39874 4.40520 4.45916 4.62380 4.63054 4.72159 4.75355 4.77039 4.83793 4.87750 5.06929 5.08750 5.11850 5.17533 5.19205 5.20665 5.24838 5.28075 5.30154 5.39578 5.50422 5.53133 5.58977 5.59952 5.70418 5.79957 5.83487 6.14440 6.61223 6.79509 7.29612 7.50579 8.57220 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.001851 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.192527 B =15120.742357 C =15772.987534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.068 4.068 4 C -0.145 4.145 5 C -0.145 4.145 6 C 0.130 3.870 7 N -0.710 5.710 8 C 0.546 3.454 9 O -0.598 6.598 10 C -0.238 4.238 11 C 0.009 3.991 12 C -0.160 4.160 13 C -0.040 4.040 14 C -0.193 4.193 15 C 0.136 3.864 16 O -0.233 6.233 17 C -0.405 4.405 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.972 3.028 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.259 1.259 25 C -0.243 4.243 26 C -0.047 4.047 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.414 0.586 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.167 0.833 44 H 0.140 0.860 45 H 0.286 0.714 46 H 0.113 0.887 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.206 -18.389 -0.746 32.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.069 4.069 4 C -0.202 4.202 5 C -0.202 4.202 6 C 0.006 3.994 7 N -0.362 5.362 8 C 0.337 3.663 9 O -0.482 6.482 10 C -0.259 4.259 11 C -0.011 4.011 12 C -0.160 4.160 13 C -0.057 4.057 14 C -0.212 4.212 15 C 0.085 3.915 16 O -0.139 6.139 17 C -0.480 4.480 18 H 0.101 0.899 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.183 1.183 25 C -0.263 4.263 26 C -0.065 4.065 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.252 0.748 41 H 0.174 0.826 42 H 0.138 0.862 43 H 0.185 0.815 44 H 0.158 0.842 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -25.626 -18.684 -0.745 31.722 hybrid contribution 0.628 0.833 0.040 1.044 sum -24.998 -17.851 -0.705 30.725 Atomic orbital electron populations 1.21861 0.94615 1.01984 1.02514 1.21506 0.96968 0.94417 1.02159 1.20761 0.91778 0.97154 0.97188 1.21957 1.02080 1.00125 0.96071 1.21956 1.02076 1.00129 0.96067 1.21406 0.94355 0.82535 1.01122 1.45802 1.06272 1.09626 1.74529 1.18599 0.82615 0.89671 0.75415 1.90783 1.56708 1.47781 1.52888 1.22804 0.96795 0.95225 1.11036 1.22162 0.96097 0.93909 0.88892 1.18816 0.92866 0.93009 1.11357 1.21358 1.00554 0.89720 0.94077 1.20502 0.91306 0.98732 1.10679 1.19943 0.94376 0.83791 0.93360 1.83461 1.25133 1.23895 1.81425 1.20758 0.79146 0.95834 1.52311 0.89905 1.25330 0.97425 1.00836 0.95097 1.69702 1.12365 1.25074 1.48525 0.85203 0.78758 0.77173 0.79527 1.18965 1.19282 1.18321 1.21220 0.99964 0.93414 1.11662 1.21286 0.95530 0.95340 0.94315 0.91968 0.91949 0.92582 0.91963 0.91981 0.92210 0.90811 0.92963 0.92941 0.90819 0.92204 0.92732 0.92775 0.74788 0.82555 0.86179 0.81540 0.84241 0.90385 0.86922 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.21 71.98 0.66 -0.41 16 2 C -0.11 -1.03 4.99 30.59 0.15 -0.88 16 3 C -0.07 -0.67 0.56 -52.18 -0.03 -0.70 16 4 C -0.15 -1.23 7.95 71.98 0.57 -0.65 16 5 C -0.15 -1.22 7.95 71.98 0.57 -0.65 16 6 C 0.13 2.04 4.56 86.38 0.39 2.43 16 7 N -0.71 -11.58 4.95 -467.51 -2.32 -13.89 16 8 C 0.55 13.09 7.74 86.33 0.67 13.76 16 9 O -0.60 -19.67 16.23 -4.41 -0.07 -19.74 16 10 C -0.24 -5.09 9.41 23.61 0.22 -4.86 16 11 C 0.01 0.24 9.45 23.82 0.23 0.47 16 12 C -0.16 -4.75 5.87 -20.13 -0.12 -4.87 16 13 C -0.04 -1.09 9.40 22.55 0.21 -0.88 16 14 C -0.19 -6.72 9.97 22.35 0.22 -6.50 16 15 C 0.14 6.04 6.66 22.72 0.15 6.19 16 16 O -0.23 -12.12 8.57 -20.32 -0.17 -12.29 16 17 C -0.40 -23.15 9.94 67.93 0.68 -22.47 16 18 H 0.08 4.98 5.41 -2.91 -0.02 4.97 16 19 C 0.01 0.71 5.49 84.85 0.47 1.18 16 20 N -0.92 -53.56 13.96 21.62 0.30 -53.26 16 21 Si 0.97 43.76 28.62 68.60 1.96 45.73 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 25 C -0.24 -10.37 9.14 22.34 0.20 -10.17 16 26 C -0.05 -1.60 9.78 22.55 0.22 -1.38 16 27 H 0.06 0.40 6.43 -2.39 -0.02 0.38 16 28 H 0.06 0.40 6.43 -2.39 -0.02 0.38 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.46 6.86 -2.39 -0.02 0.45 16 33 H 0.07 0.48 6.43 -2.39 -0.02 0.46 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.07 0.48 6.43 -2.39 -0.02 0.46 16 37 H 0.06 0.46 6.86 -2.39 -0.02 0.44 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.41 4.34 6.14 -92.71 -0.57 3.77 16 41 H 0.16 2.28 6.07 -2.91 -0.02 2.26 16 42 H 0.12 3.31 7.52 -2.91 -0.02 3.29 16 43 H 0.17 3.04 6.16 -2.91 -0.02 3.02 16 44 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 45 H 0.29 15.31 8.31 -92.71 -0.77 14.54 16 46 H 0.11 5.30 5.62 -2.91 -0.02 5.28 16 47 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -69.14 379.50 5.59 -63.55 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: 0.41 Total: 20.29 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 5.47 Total: -30.38 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -2.01 Total: -67.15 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.25 Total: -32.03 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.96 Total: 45.73 kcal Total: -69.14 5.59 -63.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192192627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.542 kcal (2) G-P(sol) polarization free energy of solvation -69.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds