Wall clock time and date at job start Tue Mar 31 2020 13:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 C 1.53009 * 109.46756 * 119.99352 * 2 1 3 5 5 C 1.50703 * 109.46773 * 65.00600 * 4 2 1 6 6 C 1.38232 * 120.00150 * 89.99890 * 5 4 2 7 7 C 1.38236 * 119.99913 * 179.97438 * 6 5 4 8 8 C 1.38235 * 119.99787 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99834 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46846 * 89.99992 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 C 1.38230 * 120.00303 * 0.25347 * 8 7 6 26 26 C 1.38235 * 120.00023 * 359.47152 * 25 8 7 27 27 H 1.09002 * 109.46382 * 60.00734 * 1 2 3 28 28 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47377 * 300.00674 * 1 2 3 30 30 H 1.08991 * 109.47377 * 239.99326 * 2 1 3 31 31 H 1.08998 * 109.47322 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46485 * 299.99638 * 3 2 1 33 33 H 1.09000 * 109.47219 * 59.99469 * 3 2 1 34 34 H 1.08992 * 109.47078 * 305.00369 * 4 2 1 35 35 H 1.09002 * 109.46724 * 184.99966 * 4 2 1 36 36 H 1.07991 * 120.00006 * 359.97438 * 6 5 4 37 37 H 1.08003 * 120.00297 * 179.97438 * 7 6 5 38 38 H 1.08992 * 109.47417 * 330.00463 * 9 8 7 39 39 H 1.08994 * 109.47515 * 209.99825 * 9 8 7 40 40 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 41 41 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 42 42 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 43 43 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 44 44 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 45 45 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 46 46 H 1.08000 * 120.00051 * 179.72956 * 25 8 7 47 47 H 1.08003 * 120.00575 * 180.28011 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 -2.1733 1.1891 6 6 2.4815 -3.0966 0.5953 7 6 2.1160 -4.4286 0.5404 8 6 0.9101 -4.8372 1.0789 9 6 0.5114 -6.2893 1.0185 10 6 1.0137 -6.9996 2.2491 11 8 1.6338 -6.3869 3.0923 12 7 0.7728 -8.3154 2.4132 13 6 1.1021 -9.3050 3.4575 14 6 -0.1239 -10.0884 2.9544 15 8 -1.3381 -9.7517 3.6284 16 6 0.1030 -11.5753 2.8603 17 1 1.0313 -12.0030 3.2092 18 6 -0.8745 -12.3896 2.3290 19 7 -1.8777 -11.8629 1.6611 20 14 -0.7740 -14.2407 2.5575 21 1 -1.9368 -14.8851 1.8955 22 1 0.4834 -14.7469 1.9509 23 1 -0.7885 -14.5620 4.0073 24 6 0.0746 -9.3458 1.6202 25 6 0.0674 -3.9130 1.6675 26 6 0.4354 -2.5818 1.7274 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 1.8934 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2953 36 1 3.4233 -2.7773 0.1743 37 1 2.7722 -5.1500 0.0762 38 1 0.9461 -6.7489 0.1310 39 1 -0.5748 -6.3662 0.9726 40 1 0.9938 -8.9243 4.4731 41 1 2.0492 -9.8193 3.2948 42 1 -2.1292 -10.1414 3.2319 43 1 -1.8864 -10.9121 1.4689 44 1 0.7203 -9.8714 0.9167 45 1 -0.8545 -8.9979 1.1685 46 1 -0.8766 -4.2315 2.0842 47 1 -0.2210 -1.8604 2.1913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193139331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:43 Heat of formation + Delta-G solvation = -51.113062 kcal Electronic energy + Delta-G solvation = -25936.115581 eV Core-core repulsion = 22276.979432 eV Total energy + Delta-G solvation = -3659.136149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.02932 -39.35096 -37.63439 -36.36961 -34.29018 -32.76143 -32.41088 -30.90054 -29.65945 -27.98812 -27.41112 -25.62786 -25.45208 -24.33797 -22.69261 -21.29516 -20.30834 -20.07074 -18.49910 -17.91112 -16.50194 -16.32245 -15.87264 -15.44073 -15.10276 -15.01226 -14.74623 -14.51524 -14.37573 -13.96325 -13.81757 -13.60759 -13.37072 -12.91538 -12.62206 -12.59520 -12.48737 -12.21157 -12.16084 -12.08996 -11.67141 -11.63347 -11.50064 -11.15780 -11.10452 -10.96950 -10.94493 -10.81869 -10.73982 -10.57511 -10.23813 -9.53744 -9.35358 -8.85876 -8.82278 -8.50507 -8.36989 -7.90261 -6.71165 -4.50415 1.36494 1.48992 3.11470 3.28954 3.32843 3.40030 3.51156 3.85697 4.30446 4.53844 4.59488 4.70942 4.77048 4.82459 4.87200 5.02850 5.04891 5.09733 5.19853 5.33336 5.35616 5.40098 5.45853 5.52781 5.57191 5.62191 5.65311 5.66343 5.68657 5.77573 5.83169 6.03766 6.04315 6.06295 6.09786 6.13388 6.15296 6.32333 6.37096 6.43767 6.51583 6.63635 6.69324 6.76298 7.06896 7.63224 8.06814 8.34107 8.42520 8.66624 8.81688 9.19816 10.60349 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.002200 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.462746 B =12723.528579 C =12866.898020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.075 4.075 5 C -0.086 4.086 6 C -0.117 4.117 7 C -0.104 4.104 8 C -0.059 4.059 9 C -0.098 4.098 10 C 0.530 3.470 11 O -0.553 6.553 12 N -0.635 5.635 13 C 0.123 3.877 14 C 0.216 3.784 15 O -0.566 6.566 16 C -0.617 4.617 17 H 0.065 0.935 18 C 0.037 3.963 19 N -0.898 5.898 20 Si 1.067 2.933 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.069 3.931 25 C -0.103 4.103 26 C -0.114 4.114 27 H 0.051 0.949 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.375 0.625 43 H 0.268 0.732 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.119 0.881 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 18.734 -6.118 20.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.112 4.112 5 C -0.086 4.086 6 C -0.136 4.136 7 C -0.122 4.122 8 C -0.060 4.060 9 C -0.138 4.138 10 C 0.320 3.680 11 O -0.433 6.433 12 N -0.370 5.370 13 C 0.001 3.999 14 C 0.175 3.825 15 O -0.373 6.373 16 C -0.655 4.655 17 H 0.083 0.917 18 C -0.169 4.169 19 N -0.534 5.534 20 Si 0.893 3.107 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.054 4.054 25 C -0.121 4.121 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.137 0.863 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.406 18.207 -5.601 19.552 hybrid contribution 0.487 1.011 -0.184 1.137 sum 4.893 19.218 -5.785 20.658 Atomic orbital electron populations 1.21924 0.95142 1.02364 1.01380 1.21087 0.96193 0.95685 0.98020 1.21854 1.00890 0.95987 1.01736 1.20660 1.00977 0.91312 0.98245 1.19775 0.94809 0.95265 0.98730 1.20903 0.99384 0.92889 1.00374 1.20941 0.95670 0.95839 0.99709 1.19319 0.94859 0.93684 0.98126 1.20607 1.03128 0.92365 0.97708 1.20059 0.79605 0.80820 0.87542 1.90664 1.42129 1.65592 1.44867 1.50198 1.55326 1.06110 1.25330 1.23270 0.98491 0.85716 0.92397 1.20148 0.82830 0.92860 0.86663 1.86255 1.17103 1.75992 1.57968 1.22227 1.06169 0.90869 1.46204 0.91682 1.25983 0.92045 1.07134 0.91757 1.70952 1.32235 1.15116 1.35101 0.83582 0.76336 0.73969 0.76789 1.20558 1.21117 1.21002 1.24473 0.95452 0.86310 0.99139 1.20979 0.99685 0.92994 0.98475 1.20928 0.96371 0.95588 1.00345 0.92994 0.91948 0.92822 0.91140 0.92739 0.92714 0.92694 0.91134 0.91174 0.86411 0.86404 0.88436 0.88333 0.91104 0.89431 0.77633 0.92043 0.89509 0.91653 0.86301 0.86339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 8.76 37.16 0.33 -0.87 16 2 C -0.09 -0.72 2.91 -90.61 -0.26 -0.98 16 3 C -0.15 -0.96 9.19 37.16 0.34 -0.62 16 4 C -0.07 -0.67 4.84 -27.88 -0.13 -0.80 16 5 C -0.09 -0.99 4.71 -104.62 -0.49 -1.49 16 6 C -0.12 -1.43 9.70 -39.58 -0.38 -1.82 16 7 C -0.10 -1.43 9.70 -39.58 -0.38 -1.81 16 8 C -0.06 -0.89 4.37 -104.62 -0.46 -1.34 16 9 C -0.10 -1.51 5.58 -29.03 -0.16 -1.67 16 10 C 0.53 10.57 8.05 -10.98 -0.09 10.48 16 11 O -0.55 -12.76 16.76 5.56 0.09 -12.67 16 12 N -0.64 -13.14 3.61 -178.25 -0.64 -13.78 16 13 C 0.12 2.69 8.22 -2.97 -0.02 2.66 16 14 C 0.22 5.05 1.08 -90.83 -0.10 4.95 16 15 O -0.57 -13.85 13.45 -35.23 -0.47 -14.32 16 16 C -0.62 -15.49 8.56 -34.44 -0.29 -15.78 16 17 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 18 C 0.04 0.92 5.26 -17.82 -0.09 0.83 16 19 N -0.90 -23.27 12.80 55.43 0.71 -22.56 16 20 Si 1.07 22.54 29.93 -169.99 -5.09 17.46 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 24 C 0.07 1.43 7.05 -2.95 -0.02 1.40 16 25 C -0.10 -1.45 9.70 -39.59 -0.38 -1.84 16 26 C -0.11 -1.41 7.96 -39.58 -0.32 -1.72 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.57 6.26 -51.93 -0.33 0.24 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 37 H 0.12 1.48 8.06 -52.48 -0.42 1.05 16 38 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 39 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 40 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 42 H 0.37 8.91 6.95 45.56 0.32 9.22 16 43 H 0.27 6.71 5.53 -40.82 -0.23 6.49 16 44 H 0.09 1.75 8.09 -51.93 -0.42 1.33 16 45 H 0.07 1.28 7.80 -51.92 -0.41 0.87 16 46 H 0.12 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.12 1.23 8.04 -52.48 -0.42 0.80 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -29.69 385.67 -9.54 -39.22 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -7.02 Total: 11.27 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.93 Total: -10.44 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.07 Total: -36.34 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.38 Total: -26.99 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.09 Total: 17.46 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.69 -9.54 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193139331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.889 kcal (2) G-P(sol) polarization free energy of solvation -29.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds