Wall clock time and date at job start Tue Mar 31 2020 13:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47162 * 2 1 4 4 C 1.53009 * 109.46756 * 119.99352 * 2 1 3 5 5 C 1.50703 * 109.46773 * 65.00600 * 4 2 1 6 6 C 1.38232 * 120.00150 * 89.99890 * 5 4 2 7 7 C 1.38236 * 119.99913 * 179.97438 * 6 5 4 8 8 C 1.38235 * 119.99787 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99834 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46846 * 89.99992 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 C 1.38230 * 120.00303 * 0.25347 * 8 7 6 26 26 C 1.38235 * 120.00023 * 359.47152 * 25 8 7 27 27 H 1.09002 * 109.46382 * 60.00734 * 1 2 3 28 28 H 1.09007 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47377 * 300.00674 * 1 2 3 30 30 H 1.08991 * 109.47377 * 239.99326 * 2 1 3 31 31 H 1.08998 * 109.47322 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46485 * 299.99638 * 3 2 1 33 33 H 1.09000 * 109.47219 * 59.99469 * 3 2 1 34 34 H 1.08992 * 109.47078 * 305.00369 * 4 2 1 35 35 H 1.09002 * 109.46724 * 184.99966 * 4 2 1 36 36 H 1.07991 * 120.00006 * 359.97438 * 6 5 4 37 37 H 1.08003 * 120.00297 * 179.97438 * 7 6 5 38 38 H 1.08992 * 109.47417 * 330.00463 * 9 8 7 39 39 H 1.08994 * 109.47515 * 209.99825 * 9 8 7 40 40 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 41 41 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 42 42 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 43 43 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 44 44 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 45 45 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 46 46 H 1.08000 * 120.00051 * 179.72956 * 25 8 7 47 47 H 1.08003 * 120.00575 * 180.28011 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 -2.1733 1.1891 6 6 2.4815 -3.0966 0.5953 7 6 2.1160 -4.4286 0.5404 8 6 0.9101 -4.8372 1.0789 9 6 0.5114 -6.2893 1.0185 10 6 1.0137 -6.9996 2.2491 11 8 1.6338 -6.3869 3.0923 12 7 0.7728 -8.3154 2.4132 13 6 1.1021 -9.3050 3.4575 14 6 -0.1239 -10.0884 2.9544 15 8 -1.3381 -9.7517 3.6284 16 6 0.1030 -11.5753 2.8603 17 1 1.0313 -12.0030 3.2092 18 6 -0.8745 -12.3896 2.3290 19 7 -1.8777 -11.8629 1.6611 20 14 -0.7740 -14.2407 2.5575 21 1 -1.9368 -14.8851 1.8955 22 1 0.4834 -14.7469 1.9509 23 1 -0.7885 -14.5620 4.0073 24 6 0.0746 -9.3458 1.6202 25 6 0.0674 -3.9130 1.6675 26 6 0.4354 -2.5818 1.7274 27 1 -0.3632 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 1.8934 -0.5139 -0.8898 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2953 36 1 3.4233 -2.7773 0.1743 37 1 2.7722 -5.1500 0.0762 38 1 0.9461 -6.7489 0.1310 39 1 -0.5748 -6.3662 0.9726 40 1 0.9938 -8.9243 4.4731 41 1 2.0492 -9.8193 3.2948 42 1 -2.1292 -10.1414 3.2319 43 1 -1.8864 -10.9121 1.4689 44 1 0.7203 -9.8714 0.9167 45 1 -0.8545 -8.9979 1.1685 46 1 -0.8766 -4.2315 2.0842 47 1 -0.2210 -1.8604 2.1913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193139331.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:42 Heat of formation + Delta-G solvation = -67.234735 kcal Electronic energy + Delta-G solvation = -25936.814669 eV Core-core repulsion = 22276.979432 eV Total energy + Delta-G solvation = -3659.835237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.50211 -40.56114 -39.20230 -37.19112 -36.12463 -34.34100 -33.80417 -31.87611 -31.00781 -29.31633 -27.98635 -27.26054 -26.96575 -25.69860 -23.66911 -22.51030 -21.74506 -20.81764 -20.24490 -19.65274 -18.10506 -17.45694 -17.10139 -16.85358 -16.52263 -16.35091 -15.90852 -15.70809 -15.55919 -15.35659 -15.17512 -14.65355 -14.35959 -14.25339 -14.22658 -13.96823 -13.51261 -13.33668 -13.20118 -13.12646 -12.97676 -12.92927 -12.66185 -12.63516 -12.39006 -12.36235 -11.90697 -11.89378 -11.71795 -11.52533 -11.50276 -11.20060 -11.16098 -10.72994 -10.24235 -9.81429 -9.66313 -9.42113 -8.67673 -6.48192 0.35011 0.49611 1.54674 1.61228 1.64896 1.84944 1.86578 2.55796 2.78798 2.91374 3.38487 3.60964 3.71090 3.81661 3.87522 3.91378 4.01594 4.07797 4.13524 4.24795 4.33332 4.37892 4.40851 4.45891 4.57322 4.61326 4.63469 4.64053 4.77181 4.80271 4.81204 4.84856 4.95109 4.97824 5.06149 5.07128 5.12935 5.18375 5.32883 5.43186 5.46092 5.51476 5.65522 5.71861 5.74135 6.08880 6.10326 6.46079 6.72277 6.92587 7.06373 7.27368 8.65475 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.039569 B = 0.002200 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.462746 B =12723.528579 C =12866.898020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.088 4.088 3 C -0.145 4.145 4 C -0.072 4.072 5 C -0.083 4.083 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.084 4.084 9 C -0.088 4.088 10 C 0.526 3.474 11 O -0.588 6.588 12 N -0.636 5.636 13 C 0.120 3.880 14 C 0.198 3.802 15 O -0.577 6.577 16 C -0.632 4.632 17 H 0.060 0.940 18 C -0.001 4.001 19 N -0.914 5.914 20 Si 1.109 2.891 21 H -0.284 1.284 22 H -0.270 1.270 23 H -0.279 1.279 24 C 0.087 3.913 25 C -0.121 4.121 26 C -0.119 4.119 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.140 0.860 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.100 0.900 42 H 0.375 0.625 43 H 0.265 0.735 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.119 0.881 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 19.811 -7.060 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.110 4.110 5 C -0.083 4.083 6 C -0.141 4.141 7 C -0.135 4.135 8 C -0.084 4.084 9 C -0.127 4.127 10 C 0.318 3.682 11 O -0.469 6.469 12 N -0.370 5.370 13 C -0.002 4.002 14 C 0.157 3.843 15 O -0.385 6.385 16 C -0.670 4.670 17 H 0.079 0.921 18 C -0.203 4.203 19 N -0.551 5.551 20 Si 0.932 3.068 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.205 1.205 24 C -0.036 4.036 25 C -0.139 4.139 26 C -0.137 4.137 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.118 0.882 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.137 0.863 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.007 19.301 -6.556 20.990 hybrid contribution 0.316 0.758 0.153 0.836 sum 5.323 20.059 -6.403 21.719 Atomic orbital electron populations 1.21922 0.95295 1.01604 1.01988 1.21055 0.96028 0.96412 0.97167 1.21826 1.01224 0.94929 1.02203 1.20711 1.01631 0.89569 0.99051 1.20121 0.94195 0.96664 0.97353 1.21216 1.00331 0.92426 1.00134 1.21158 0.95497 0.96899 0.99939 1.19396 0.95880 0.93395 0.99742 1.20593 1.03711 0.92511 0.95885 1.20880 0.78717 0.80198 0.88404 1.90637 1.43734 1.66094 1.46480 1.50227 1.55440 1.06508 1.24873 1.23255 0.98526 0.86199 0.92250 1.20353 0.82782 0.92724 0.88442 1.86240 1.17553 1.76039 1.58647 1.22440 1.06228 0.92029 1.46281 0.92142 1.27068 0.91643 1.10369 0.91171 1.71016 1.32867 1.15198 1.36068 0.83006 0.76745 0.70112 0.76958 1.20907 1.19480 1.20486 1.24236 0.95937 0.85656 0.97787 1.21155 0.99919 0.93903 0.98954 1.21171 0.97022 0.95254 1.00219 0.92387 0.93338 0.92279 0.91626 0.92220 0.92189 0.92322 0.90550 0.90265 0.84245 0.85670 0.86355 0.87206 0.92353 0.88233 0.77647 0.92321 0.88884 0.90604 0.86345 0.84668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.76 71.98 0.63 -1.51 16 2 C -0.09 -1.21 2.91 -10.79 -0.03 -1.24 16 3 C -0.14 -1.54 9.19 71.98 0.66 -0.88 16 4 C -0.07 -1.14 4.84 29.85 0.14 -0.99 16 5 C -0.08 -1.80 4.71 -19.86 -0.09 -1.90 16 6 C -0.12 -2.82 9.70 22.27 0.22 -2.61 16 7 C -0.12 -3.11 9.70 22.27 0.22 -2.90 16 8 C -0.08 -2.45 4.37 -19.87 -0.09 -2.54 16 9 C -0.09 -2.62 5.58 29.11 0.16 -2.46 16 10 C 0.53 20.83 8.05 87.66 0.71 21.54 16 11 O -0.59 -27.31 16.76 -3.03 -0.05 -27.36 16 12 N -0.64 -26.12 3.61 -840.07 -3.03 -29.15 16 13 C 0.12 5.27 8.22 86.48 0.71 5.98 16 14 C 0.20 9.23 1.08 -10.87 -0.01 9.22 16 15 O -0.58 -28.50 13.45 -148.98 -2.00 -30.51 16 16 C -0.63 -31.58 8.56 25.60 0.22 -31.36 16 17 H 0.06 3.00 7.85 -2.91 -0.02 2.98 16 18 C 0.00 -0.03 5.26 84.65 0.45 0.42 16 19 N -0.91 -47.02 12.80 21.45 0.27 -46.75 16 20 Si 1.11 44.73 29.93 68.60 2.05 46.78 16 21 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 22 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 24 C 0.09 3.50 7.05 86.49 0.61 4.11 16 25 C -0.12 -3.38 9.70 22.27 0.22 -3.16 16 26 C -0.12 -2.81 7.96 22.27 0.18 -2.63 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.05 0.82 6.26 -2.38 -0.01 0.81 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 35 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 36 H 0.14 2.49 8.06 -2.92 -0.02 2.47 16 37 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 38 H 0.12 3.00 8.08 -2.39 -0.02 2.98 16 39 H 0.11 3.00 8.08 -2.39 -0.02 2.99 16 40 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.10 4.06 8.09 -2.39 -0.02 4.04 16 42 H 0.37 18.03 6.95 -74.06 -0.52 17.51 16 43 H 0.27 13.27 5.53 -92.70 -0.51 12.75 16 44 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 45 H 0.08 2.89 7.80 -2.38 -0.02 2.87 16 46 H 0.12 3.16 8.06 -2.91 -0.02 3.14 16 47 H 0.14 2.63 8.04 -2.91 -0.02 2.60 16 Total: -1.00 -62.46 385.67 2.83 -59.64 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: 0.69 Total: 40.24 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 4.89 Total: -12.90 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -2.76 Total: -75.89 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -2.06 Total: -57.86 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.05 Total: 46.78 kcal Total: -62.46 2.83 -59.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193139331.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.597 kcal (2) G-P(sol) polarization free energy of solvation -62.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds