Wall clock time and date at job start Tue Mar 31 2020 13:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47358 * 2 1 4 4 C 1.52994 * 109.47373 * 175.00652 * 3 2 1 5 5 C 1.52994 * 109.47229 * 193.85046 * 4 3 2 6 6 C 1.52999 * 109.46896 * 295.00549 * 3 2 1 7 7 N 1.46497 * 109.47189 * 173.25194 * 6 3 2 8 8 C 1.46498 * 120.00050 * 293.98595 * 7 6 3 9 9 C 1.50700 * 109.46844 * 274.81529 * 8 7 6 10 10 H 1.07998 * 120.00562 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99883 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00153 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47320 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47331 * 119.99720 * 13 11 9 16 16 H 1.48501 * 109.47465 * 240.00272 * 13 11 9 17 17 C 1.34776 * 119.99863 * 113.97599 * 7 6 3 18 18 O 1.21372 * 120.00089 * 186.85450 * 17 7 6 19 19 C 1.49287 * 120.00083 * 6.86132 * 17 7 6 20 20 O 1.21353 * 119.99983 * 12.74927 * 19 17 7 21 21 C 1.47401 * 120.00047 * 192.74490 * 19 17 7 22 22 C 1.39914 * 120.17060 * 174.51102 * 21 19 17 23 23 C 1.37854 * 119.82080 * 179.97438 * 22 21 19 24 24 C 1.38444 * 120.17505 * 0.02562 * 23 22 21 25 25 C 1.38456 * 120.34939 * 359.97438 * 24 23 22 26 26 C 1.37851 * 120.17535 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47193 * 185.37477 * 1 2 3 28 28 H 1.09004 * 109.46751 * 305.37140 * 1 2 3 29 29 H 1.09001 * 109.47967 * 65.37116 * 1 2 3 30 30 H 1.09002 * 109.46954 * 240.00113 * 2 1 3 31 31 H 1.08997 * 109.47321 * 120.00575 * 2 1 3 32 32 H 1.09000 * 109.46693 * 55.00401 * 3 2 1 33 33 H 1.09005 * 109.47095 * 313.84887 * 4 3 2 34 34 H 1.08999 * 109.47222 * 73.85039 * 4 3 2 35 35 H 1.08998 * 109.47332 * 62.89787 * 5 4 3 36 36 H 1.09001 * 109.47582 * 182.89555 * 5 4 3 37 37 H 1.09003 * 109.47371 * 302.89789 * 5 4 3 38 38 H 1.09007 * 109.47280 * 53.25312 * 6 3 2 39 39 H 1.08997 * 109.47377 * 293.25620 * 6 3 2 40 40 H 1.09001 * 109.47731 * 34.81584 * 8 7 6 41 41 H 1.09001 * 109.47228 * 154.81920 * 8 7 6 42 42 H 0.96996 * 120.00034 * 180.02562 * 12 11 9 43 43 H 1.08002 * 120.09120 * 359.70509 * 22 21 19 44 44 H 1.07996 * 119.91040 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.82652 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.90716 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.08790 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1256 5 6 4.0464 2.8549 0.4708 6 6 1.6351 2.1266 -1.3073 7 7 1.9805 3.5487 -1.2417 8 6 1.2966 4.4254 -0.2878 9 6 0.0079 4.9186 -0.8938 10 1 -0.2737 4.6097 -1.8896 11 6 -0.8122 5.7636 -0.1764 12 7 -0.4697 6.1395 1.0364 13 14 -2.4099 6.3744 -0.9272 14 1 -2.5633 5.8094 -2.2920 15 1 -3.5514 5.9417 -0.0818 16 1 -2.3854 7.8572 -1.0048 17 6 2.9277 4.0505 -2.0587 18 8 3.3026 5.1967 -1.9212 19 6 3.5157 3.1967 -3.1328 20 8 2.9914 2.1419 -3.4246 21 6 4.7331 3.6348 -3.8390 22 6 5.3525 2.7877 -4.7644 23 6 6.4905 3.2050 -5.4212 24 6 7.0208 4.4583 -5.1666 25 6 6.4137 5.3023 -4.2523 26 6 5.2752 4.8997 -3.5874 27 1 -0.3633 -1.0231 0.0963 28 1 -0.3633 0.5949 0.8380 29 1 -0.3635 0.4282 -0.9341 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6054 1.9815 0.8419 33 1 3.8652 0.7546 0.9144 34 1 4.0076 1.1304 -0.8197 35 1 3.6448 3.1488 1.4405 36 1 5.1356 2.8676 0.5096 37 1 3.7019 3.5533 -0.2919 38 1 0.5604 2.0202 -1.4554 39 1 2.1642 1.6622 -2.1394 40 1 1.0798 3.8705 0.6250 41 1 1.9364 5.2759 -0.0526 42 1 -1.0468 6.7336 1.5412 43 1 4.9427 1.8079 -4.9606 44 1 6.9700 2.5522 -6.1355 45 1 7.9128 4.7793 -5.6840 46 1 6.8332 6.2786 -4.0595 47 1 4.8030 5.5590 -2.8741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194266022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:09 Heat of formation + Delta-G solvation = -26.341199 kcal Electronic energy + Delta-G solvation = -27850.046024 eV Core-core repulsion = 24191.984064 eV Total energy + Delta-G solvation = -3658.061960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.79839 -38.88078 -37.92516 -37.05745 -34.21185 -32.52879 -31.68177 -31.27001 -30.96623 -28.14747 -27.47475 -25.55424 -24.31018 -23.36465 -22.52524 -21.65961 -21.21605 -19.73895 -19.13904 -17.12746 -16.76945 -16.62534 -16.20603 -15.60362 -15.11093 -14.86649 -14.62499 -14.40929 -14.14366 -13.92243 -13.70694 -13.40707 -13.34642 -13.06672 -12.79918 -12.55415 -12.36340 -12.20516 -12.00797 -11.72344 -11.54272 -11.31286 -11.22546 -11.19820 -11.03974 -10.73693 -10.59733 -10.50068 -10.41152 -10.26829 -10.05126 -9.85639 -9.52733 -9.02510 -8.97063 -8.48702 -8.48109 -7.67004 -6.10032 -4.15208 0.46466 1.38901 1.90149 3.26899 3.30250 3.34876 3.40394 3.45265 3.91755 4.36209 4.49195 4.75203 4.90114 4.99242 5.04878 5.07872 5.15176 5.24904 5.33257 5.40886 5.50231 5.52770 5.72074 5.76411 5.80406 5.86655 5.92556 6.03955 6.10130 6.17375 6.23179 6.29808 6.32326 6.34888 6.38901 6.42469 6.46494 6.50170 6.66479 6.71065 6.80592 6.88792 6.91303 7.28920 7.36553 7.50523 7.85663 8.14513 8.20897 8.62595 8.90547 9.49827 10.97880 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.004941 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.354736 B = 5666.070209 C = 7158.783311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 C -0.112 4.112 5 C -0.173 4.173 6 C 0.060 3.940 7 N -0.552 5.552 8 C 0.239 3.761 9 C -0.530 4.530 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 C 0.479 3.521 18 O -0.520 6.520 19 C 0.390 3.610 20 O -0.421 6.421 21 C -0.165 4.165 22 C -0.059 4.059 23 C -0.146 4.146 24 C -0.087 4.087 25 C -0.142 4.142 26 C -0.062 4.062 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.039 0.961 41 H 0.050 0.950 42 H 0.263 0.737 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.155 -9.378 -7.308 17.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.126 4.126 4 C -0.150 4.150 5 C -0.231 4.231 6 C -0.062 4.062 7 N -0.282 5.282 8 C 0.121 3.879 9 C -0.569 4.569 10 H 0.077 0.923 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.725 3.275 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 C 0.263 3.737 18 O -0.399 6.399 19 C 0.266 3.734 20 O -0.296 6.296 21 C -0.167 4.167 22 C -0.078 4.078 23 C -0.164 4.164 24 C -0.105 4.105 25 C -0.160 4.160 26 C -0.079 4.079 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.146 0.854 47 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 11.963 -9.226 -7.205 16.738 hybrid contribution -0.993 0.400 -0.246 1.099 sum 10.970 -8.826 -7.451 15.929 Atomic orbital electron populations 1.21829 0.95758 1.00878 1.02729 1.21459 0.96052 0.95974 1.01421 1.21606 0.95427 0.95860 0.99712 1.21518 0.95385 0.97435 1.00617 1.22260 0.99703 0.97683 1.03444 1.22916 1.02942 0.80666 0.99657 1.48384 1.34234 1.10064 1.35493 1.19475 0.91891 0.89465 0.87095 1.21428 1.04569 1.29028 1.01856 0.92305 1.24903 0.98286 0.95813 0.94819 1.69937 1.37852 1.34741 1.10470 0.86453 0.83049 0.78709 0.79310 1.19753 1.20898 1.20825 1.20078 0.81917 0.87919 0.83764 1.90508 1.60359 1.18339 1.70737 1.23028 0.83585 0.84532 0.82231 1.90185 1.57841 1.22318 1.59249 1.20217 0.97892 0.97083 1.01491 1.21405 0.94181 0.99145 0.93044 1.21053 0.97008 0.96961 1.01343 1.21491 0.98850 0.93820 0.96320 1.21301 0.96667 1.00354 0.97706 1.22794 0.93354 0.95130 0.96662 0.93388 0.92364 0.92203 0.92222 0.92292 0.90190 0.92590 0.92953 0.92616 0.93941 0.90400 0.90584 0.85458 0.94328 0.93151 0.92691 0.85040 0.85607 0.85862 0.85368 0.80854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.54 37.15 0.35 -1.71 16 2 C -0.11 -1.46 5.38 -26.73 -0.14 -1.60 16 3 C -0.11 -1.69 1.98 -90.62 -0.18 -1.87 16 4 C -0.11 -1.67 5.41 -26.74 -0.14 -1.81 16 5 C -0.17 -2.89 9.38 37.15 0.35 -2.55 16 6 C 0.06 1.09 4.86 -4.04 -0.02 1.07 16 7 N -0.55 -11.61 1.24 -175.63 -0.22 -11.83 16 8 C 0.24 6.02 4.54 -5.19 -0.02 5.99 16 9 C -0.53 -14.64 9.38 -34.44 -0.32 -14.97 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 12 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 13 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 14 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 C 0.48 9.80 5.28 -11.66 -0.06 9.74 16 18 O -0.52 -11.64 12.81 5.48 0.07 -11.57 16 19 C 0.39 6.81 6.99 -31.26 -0.22 6.59 16 20 O -0.42 -7.27 13.21 5.49 0.07 -7.20 16 21 C -0.17 -2.52 5.88 -104.92 -0.62 -3.13 16 22 C -0.06 -0.75 9.60 -39.09 -0.38 -1.13 16 23 C -0.15 -1.51 10.03 -39.65 -0.40 -1.91 16 24 C -0.09 -0.87 10.04 -39.42 -0.40 -1.27 16 25 C -0.14 -1.67 10.03 -39.64 -0.40 -2.07 16 26 C -0.06 -0.92 9.32 -39.10 -0.36 -1.28 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.84 6.69 -51.93 -0.35 0.49 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 32 H 0.08 1.44 6.63 -51.93 -0.34 1.09 16 33 H 0.06 0.74 8.02 -51.93 -0.42 0.32 16 34 H 0.05 0.76 8.00 -51.93 -0.42 0.35 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 1.48 2.74 -51.93 -0.14 1.34 16 38 H 0.08 1.44 6.39 -51.92 -0.33 1.10 16 39 H 0.13 2.21 3.72 -56.52 -0.21 2.00 16 40 H 0.04 1.00 6.65 -51.93 -0.35 0.65 16 41 H 0.05 1.41 7.21 -51.93 -0.37 1.03 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 43 H 0.13 1.51 7.67 -52.49 -0.40 1.11 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 47 H 0.17 2.92 4.87 -52.49 -0.26 2.66 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -29.80 372.18 -8.74 -38.53 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -6.93 Total: 5.20 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.06 Total: -10.20 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: 0.52 Total: -36.89 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.14 Total: -18.77 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.80 -8.74 -38.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194266022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.193 kcal (2) G-P(sol) polarization free energy of solvation -29.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds