Wall clock time and date at job start Tue Mar 31 2020 13:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47358 * 2 1 4 4 C 1.52994 * 109.47373 * 175.00652 * 3 2 1 5 5 C 1.52994 * 109.47229 * 193.85046 * 4 3 2 6 6 C 1.52999 * 109.46896 * 295.00549 * 3 2 1 7 7 N 1.46497 * 109.47189 * 173.25194 * 6 3 2 8 8 C 1.46498 * 120.00050 * 293.98595 * 7 6 3 9 9 C 1.50700 * 109.46844 * 274.81529 * 8 7 6 10 10 H 1.07998 * 120.00562 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99883 * 179.97438 * 9 8 7 12 12 N 1.31513 * 120.00153 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99929 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47320 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47331 * 119.99720 * 13 11 9 16 16 H 1.48501 * 109.47465 * 240.00272 * 13 11 9 17 17 C 1.34776 * 119.99863 * 113.97599 * 7 6 3 18 18 O 1.21372 * 120.00089 * 186.85450 * 17 7 6 19 19 C 1.49287 * 120.00083 * 6.86132 * 17 7 6 20 20 O 1.21353 * 119.99983 * 12.74927 * 19 17 7 21 21 C 1.47401 * 120.00047 * 192.74490 * 19 17 7 22 22 C 1.39914 * 120.17060 * 174.51102 * 21 19 17 23 23 C 1.37854 * 119.82080 * 179.97438 * 22 21 19 24 24 C 1.38444 * 120.17505 * 0.02562 * 23 22 21 25 25 C 1.38456 * 120.34939 * 359.97438 * 24 23 22 26 26 C 1.37851 * 120.17535 * 0.02562 * 25 24 23 27 27 H 1.08998 * 109.47193 * 185.37477 * 1 2 3 28 28 H 1.09004 * 109.46751 * 305.37140 * 1 2 3 29 29 H 1.09001 * 109.47967 * 65.37116 * 1 2 3 30 30 H 1.09002 * 109.46954 * 240.00113 * 2 1 3 31 31 H 1.08997 * 109.47321 * 120.00575 * 2 1 3 32 32 H 1.09000 * 109.46693 * 55.00401 * 3 2 1 33 33 H 1.09005 * 109.47095 * 313.84887 * 4 3 2 34 34 H 1.08999 * 109.47222 * 73.85039 * 4 3 2 35 35 H 1.08998 * 109.47332 * 62.89787 * 5 4 3 36 36 H 1.09001 * 109.47582 * 182.89555 * 5 4 3 37 37 H 1.09003 * 109.47371 * 302.89789 * 5 4 3 38 38 H 1.09007 * 109.47280 * 53.25312 * 6 3 2 39 39 H 1.08997 * 109.47377 * 293.25620 * 6 3 2 40 40 H 1.09001 * 109.47731 * 34.81584 * 8 7 6 41 41 H 1.09001 * 109.47228 * 154.81920 * 8 7 6 42 42 H 0.96996 * 120.00034 * 180.02562 * 12 11 9 43 43 H 1.08002 * 120.09120 * 359.70509 * 22 21 19 44 44 H 1.07996 * 119.91040 * 179.97438 * 23 22 21 45 45 H 1.07997 * 119.82652 * 179.97438 * 24 23 22 46 46 H 1.08000 * 119.90716 * 180.02562 * 25 24 23 47 47 H 1.07997 * 120.08790 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1256 5 6 4.0464 2.8549 0.4708 6 6 1.6351 2.1266 -1.3073 7 7 1.9805 3.5487 -1.2417 8 6 1.2966 4.4254 -0.2878 9 6 0.0079 4.9186 -0.8938 10 1 -0.2737 4.6097 -1.8896 11 6 -0.8122 5.7636 -0.1764 12 7 -0.4697 6.1395 1.0364 13 14 -2.4099 6.3744 -0.9272 14 1 -2.5633 5.8094 -2.2920 15 1 -3.5514 5.9417 -0.0818 16 1 -2.3854 7.8572 -1.0048 17 6 2.9277 4.0505 -2.0587 18 8 3.3026 5.1967 -1.9212 19 6 3.5157 3.1967 -3.1328 20 8 2.9914 2.1419 -3.4246 21 6 4.7331 3.6348 -3.8390 22 6 5.3525 2.7877 -4.7644 23 6 6.4905 3.2050 -5.4212 24 6 7.0208 4.4583 -5.1666 25 6 6.4137 5.3023 -4.2523 26 6 5.2752 4.8997 -3.5874 27 1 -0.3633 -1.0231 0.0963 28 1 -0.3633 0.5949 0.8380 29 1 -0.3635 0.4282 -0.9341 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6054 1.9815 0.8419 33 1 3.8652 0.7546 0.9144 34 1 4.0076 1.1304 -0.8197 35 1 3.6448 3.1488 1.4405 36 1 5.1356 2.8676 0.5096 37 1 3.7019 3.5533 -0.2919 38 1 0.5604 2.0202 -1.4554 39 1 2.1642 1.6622 -2.1394 40 1 1.0798 3.8705 0.6250 41 1 1.9364 5.2759 -0.0526 42 1 -1.0468 6.7336 1.5412 43 1 4.9427 1.8079 -4.9606 44 1 6.9700 2.5522 -6.1355 45 1 7.9128 4.7793 -5.6840 46 1 6.8332 6.2786 -4.0595 47 1 4.8030 5.5590 -2.8741 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194266022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:08 Heat of formation + Delta-G solvation = -40.692261 kcal Electronic energy + Delta-G solvation = -27850.668333 eV Core-core repulsion = 24191.984064 eV Total energy + Delta-G solvation = -3658.684269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24224 -40.08164 -39.26712 -38.45009 -35.91106 -34.50924 -32.93107 -32.32437 -31.90421 -30.04508 -28.91796 -27.01484 -25.80451 -24.94704 -23.56954 -22.87289 -22.52300 -21.07282 -20.60660 -18.69150 -18.29794 -18.20051 -17.66683 -17.05902 -16.72451 -16.23178 -15.96124 -15.76685 -15.31485 -15.20918 -14.97266 -14.71204 -14.64775 -14.39802 -14.23228 -14.06674 -13.59375 -13.53163 -13.41036 -13.27846 -13.00033 -12.93646 -12.65054 -12.64226 -12.44747 -12.26356 -12.23606 -12.04372 -11.81335 -11.67993 -11.46301 -11.30740 -11.24736 -10.66725 -10.04410 -9.94280 -9.92527 -9.39537 -8.26077 -6.41049 -0.74068 0.45644 0.67060 1.34516 1.35801 1.47904 1.80486 2.01628 2.35636 2.85837 2.98935 3.05148 3.54620 3.80936 3.88540 3.98976 4.08079 4.11761 4.24520 4.35245 4.46175 4.48010 4.48937 4.53328 4.57830 4.62421 4.78923 4.87980 4.91307 4.93334 5.03621 5.08016 5.12687 5.14997 5.17060 5.18508 5.22725 5.30693 5.41217 5.42990 5.46708 5.48634 5.53648 5.58077 5.72100 5.97761 5.99177 6.02805 6.52127 6.66478 7.01814 7.29883 8.81131 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.004941 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.354736 B = 5666.070209 C = 7158.783311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.103 4.103 4 C -0.104 4.104 5 C -0.174 4.174 6 C 0.060 3.940 7 N -0.557 5.557 8 C 0.263 3.737 9 C -0.548 4.548 10 H 0.050 0.950 11 C 0.015 3.985 12 N -0.922 5.922 13 Si 0.964 3.036 14 H -0.270 1.270 15 H -0.270 1.270 16 H -0.277 1.277 17 C 0.470 3.530 18 O -0.548 6.548 19 C 0.399 3.601 20 O -0.424 6.424 21 C -0.189 4.189 22 C -0.060 4.060 23 C -0.136 4.136 24 C -0.070 4.070 25 C -0.145 4.145 26 C -0.085 4.085 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.142 0.858 40 H 0.024 0.976 41 H 0.012 0.988 42 H 0.268 0.732 43 H 0.142 0.858 44 H 0.165 0.835 45 H 0.165 0.835 46 H 0.147 0.853 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -11.210 -9.647 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.123 4.123 4 C -0.142 4.142 5 C -0.231 4.231 6 C -0.061 4.061 7 N -0.287 5.287 8 C 0.142 3.858 9 C -0.587 4.587 10 H 0.068 0.932 11 C -0.184 4.184 12 N -0.562 5.562 13 Si 0.789 3.211 14 H -0.194 1.194 15 H -0.195 1.195 16 H -0.203 1.203 17 C 0.256 3.744 18 O -0.429 6.429 19 C 0.276 3.724 20 O -0.300 6.300 21 C -0.190 4.190 22 C -0.078 4.078 23 C -0.154 4.154 24 C -0.088 4.088 25 C -0.163 4.163 26 C -0.103 4.103 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.158 0.842 40 H 0.042 0.958 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.160 0.840 44 H 0.182 0.818 45 H 0.182 0.818 46 H 0.165 0.835 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 13.653 -11.083 -9.552 20.012 hybrid contribution -1.383 1.026 0.442 1.778 sum 12.270 -10.057 -9.110 18.294 Atomic orbital electron populations 1.21822 0.96107 1.01950 1.01292 1.21438 0.95697 0.93885 1.03138 1.21568 0.96300 0.97266 0.97128 1.21479 0.94322 0.96465 1.01897 1.22229 1.00649 0.98579 1.01684 1.23110 1.02278 0.79088 1.01594 1.48331 1.34462 1.10834 1.35101 1.18841 0.90679 0.88673 0.87597 1.21673 1.05737 1.29634 1.01629 0.93162 1.25765 1.01724 0.95752 0.95188 1.70046 1.39246 1.35206 1.11674 0.85414 0.78950 0.78126 0.78629 1.19409 1.19506 1.20304 1.20832 0.81349 0.88163 0.84061 1.90506 1.61105 1.19808 1.71508 1.22744 0.84394 0.83961 0.81298 1.90145 1.58237 1.22176 1.59421 1.20068 0.97563 0.98129 1.03261 1.21613 0.94816 0.99114 0.92282 1.21523 0.95662 0.97452 1.00758 1.21974 0.99232 0.92993 0.94594 1.21545 0.95530 1.01649 0.97586 1.22578 0.95110 0.95048 0.97591 0.90880 0.94168 0.93436 0.90577 0.90315 0.93130 0.90065 0.92032 0.94155 0.92362 0.92986 0.92030 0.84152 0.95760 0.97028 0.92281 0.83974 0.81754 0.81792 0.83537 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.54 71.98 0.69 -3.37 16 2 C -0.10 -2.59 5.38 30.59 0.16 -2.43 16 3 C -0.10 -3.34 1.98 -10.79 -0.02 -3.37 16 4 C -0.10 -3.06 5.41 30.59 0.17 -2.89 16 5 C -0.17 -6.06 9.38 71.98 0.68 -5.38 16 6 C 0.06 2.26 4.86 86.38 0.42 2.68 16 7 N -0.56 -25.10 1.24 -827.93 -1.02 -26.12 16 8 C 0.26 14.27 4.54 85.63 0.39 14.66 16 9 C -0.55 -31.93 9.38 25.60 0.24 -31.69 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.02 0.89 5.46 84.66 0.46 1.35 16 12 N -0.92 -55.50 13.29 21.45 0.28 -55.21 16 13 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 14 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 17 C 0.47 20.54 5.28 87.22 0.46 21.00 16 18 O -0.55 -26.71 12.81 -3.31 -0.04 -26.75 16 19 C 0.40 14.31 6.99 27.66 0.19 14.50 16 20 O -0.42 -14.64 13.21 -3.26 -0.04 -14.69 16 21 C -0.19 -5.72 5.88 -20.06 -0.12 -5.84 16 22 C -0.06 -1.37 9.60 22.59 0.22 -1.15 16 23 C -0.14 -2.22 10.03 22.23 0.22 -2.00 16 24 C -0.07 -1.11 10.04 22.37 0.22 -0.88 16 25 C -0.15 -3.15 10.03 22.23 0.22 -2.92 16 26 C -0.09 -2.57 9.32 22.58 0.21 -2.36 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.05 1.34 6.69 -2.39 -0.02 1.33 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 32 H 0.05 1.94 6.63 -2.39 -0.02 1.92 16 33 H 0.08 1.99 8.02 -2.38 -0.02 1.97 16 34 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 35 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.05 2.11 2.74 -2.39 -0.01 2.11 16 38 H 0.06 2.45 6.39 -2.38 -0.02 2.44 16 39 H 0.14 4.94 3.72 -75.14 -0.28 4.66 16 40 H 0.02 1.37 6.65 -2.39 -0.02 1.36 16 41 H 0.01 0.71 7.21 -2.39 -0.02 0.70 16 42 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 43 H 0.14 2.88 7.67 -2.91 -0.02 2.86 16 44 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 45 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 46 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 47 H 0.14 5.20 4.87 -2.97 -0.01 5.19 16 Total: -1.00 -69.47 372.18 6.72 -62.75 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.70 Total: 22.92 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.82 Total: -10.09 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -0.74 Total: -81.34 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.09 Total: -41.44 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.47 6.72 -62.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194266022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.059 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds