Wall clock time and date at job start Tue Mar 31 2020 12:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 C 1.50704 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.38409 * 119.82205 * 90.00145 * 4 3 2 6 6 C 1.37885 * 120.16777 * 180.02562 * 5 4 3 7 7 C 1.39853 * 119.82831 * 359.97438 * 6 5 4 8 8 C 1.47165 * 120.17034 * 179.97438 * 7 6 5 9 9 O 1.21248 * 120.00642 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99722 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47014 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47014 * 180.02562 * 11 10 8 13 13 O 1.21277 * 120.00063 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99847 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00111 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46891 * 325.00262 * 15 14 12 17 17 C 1.53006 * 109.46883 * 84.99828 * 15 14 12 18 18 C 1.50697 * 109.47650 * 205.00149 * 15 14 12 19 19 H 1.08002 * 119.99362 * 359.97438 * 18 15 14 20 20 C 1.37867 * 120.00258 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00193 * 179.97438 * 20 18 15 22 22 Si 1.86804 * 120.00020 * 0.02562 * 20 18 15 23 23 H 1.48494 * 109.47177 * 89.99899 * 22 20 18 24 24 H 1.48505 * 109.47036 * 210.00183 * 22 20 18 25 25 H 1.48499 * 109.46776 * 329.99672 * 22 20 18 26 26 C 1.39850 * 119.65449 * 0.25259 * 7 6 5 27 27 C 1.37889 * 119.82522 * 359.51348 * 26 7 6 28 28 H 1.09002 * 109.47009 * 59.99869 * 1 2 3 29 29 H 1.08996 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47441 * 300.00232 * 1 2 3 31 31 H 1.09004 * 109.47441 * 239.99768 * 2 1 3 32 32 H 1.09007 * 109.47386 * 119.99888 * 2 1 3 33 33 H 1.08996 * 109.47483 * 60.00061 * 3 2 1 34 34 H 1.09002 * 109.47215 * 300.00005 * 3 2 1 35 35 H 1.08000 * 119.91485 * 0.02562 * 5 4 3 36 36 H 1.08004 * 120.08316 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47340 * 60.00001 * 10 8 7 38 38 H 1.09002 * 109.47083 * 300.00132 * 10 8 7 39 39 H 1.08999 * 109.47001 * 60.00707 * 11 10 8 40 40 H 1.08988 * 109.47340 * 300.00233 * 11 10 8 41 41 H 0.97003 * 120.00265 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.46998 * 59.99945 * 17 15 14 43 43 H 1.09000 * 109.47050 * 180.02562 * 17 15 14 44 44 H 1.09001 * 109.46801 * 300.00349 * 17 15 14 45 45 H 0.97003 * 120.00055 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.08338 * 179.72575 * 26 7 6 47 47 H 1.07997 * 119.91455 * 180.20446 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2358 1.4423 -1.1999 6 6 5.6146 1.4417 -1.2076 7 6 6.3171 1.4419 0.0017 8 6 7.7887 1.4407 0.0022 9 8 8.3955 1.4401 -1.0475 10 6 8.5417 1.4415 1.3077 11 6 10.0461 1.4394 1.0287 12 6 10.7991 1.4395 2.3341 13 8 10.1923 1.4416 3.3842 14 7 12.1468 1.4383 2.3346 15 6 12.8789 1.4390 3.6036 16 1 12.3317 2.0296 4.3384 17 6 13.0235 0.0023 4.1097 18 6 14.2458 2.0381 3.3948 19 1 14.5400 2.3834 2.4147 20 6 15.1211 2.1444 4.4547 21 7 16.3142 2.6667 4.2723 22 14 14.6130 1.5451 6.1495 23 1 14.9900 0.1171 6.3032 24 1 15.3018 2.3535 7.1874 25 1 13.1431 1.6886 6.3050 26 6 5.6137 1.4372 1.2105 27 6 4.2349 1.4427 1.2016 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.6919 1.4426 -2.1329 36 1 6.1508 1.4412 -2.1452 37 1 8.2775 0.5523 1.8801 38 1 8.2788 2.3323 1.8782 39 1 10.3107 2.3284 0.4562 40 1 10.3086 0.5485 0.4583 41 1 12.6322 1.4378 1.4948 42 1 13.5706 -0.5884 3.3749 43 1 13.5678 0.0028 5.0541 44 1 12.0347 -0.4309 4.2607 45 1 16.9299 2.7418 5.0181 46 1 6.1492 1.4328 2.1484 47 1 3.6902 1.4425 2.1342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194669138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:32 Heat of formation + Delta-G solvation = -74.929256 kcal Electronic energy + Delta-G solvation = -24953.519035 eV Core-core repulsion = 21293.350138 eV Total energy + Delta-G solvation = -3660.168896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.41103 -39.20908 -38.56888 -35.47554 -35.08343 -32.97221 -32.35875 -31.60630 -31.27427 -29.85884 -27.64521 -25.52958 -25.09226 -23.17595 -22.73760 -21.61128 -20.94709 -19.71693 -19.49225 -17.72678 -16.82943 -16.26450 -15.92748 -15.86843 -15.62785 -15.49252 -15.00041 -14.62085 -14.42065 -14.18247 -13.98665 -13.92910 -13.77826 -13.22897 -13.04573 -12.85490 -12.70712 -12.48869 -12.40727 -12.19847 -11.90551 -11.72049 -11.65364 -11.45682 -11.38752 -11.30282 -11.07830 -11.04049 -10.80981 -10.18348 -9.83526 -9.70580 -9.31381 -9.22151 -9.13374 -9.05661 -8.75002 -8.14117 -6.20020 -4.22515 0.38712 1.06542 2.20143 3.22849 3.25952 3.35531 3.39910 3.47914 3.64462 4.17521 4.29064 4.32313 4.36408 4.58733 4.60978 4.67001 4.78320 4.93159 4.95184 5.04385 5.13386 5.15817 5.19070 5.27042 5.31540 5.35646 5.46517 5.50728 5.63507 5.64939 5.70870 5.74482 5.82036 5.90016 5.96642 6.02611 6.11464 6.20578 6.31907 6.38510 6.56578 6.57024 6.85982 7.20459 7.30568 7.37939 7.53287 8.16110 8.54772 8.77050 8.94854 9.40867 10.92171 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029616 B = 0.001954 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.216335 B =14327.927897 C =14971.684925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.054 4.054 5 C -0.133 4.133 6 C -0.059 4.059 7 C -0.172 4.172 8 C 0.397 3.603 9 O -0.454 6.454 10 C -0.148 4.148 11 C -0.133 4.133 12 C 0.503 3.497 13 O -0.562 6.562 14 N -0.701 5.701 15 C 0.235 3.765 16 H 0.048 0.952 17 C -0.161 4.161 18 C -0.535 4.535 19 H 0.080 0.920 20 C 0.078 3.922 21 N -0.893 5.893 22 Si 0.886 3.114 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.262 1.262 26 C -0.066 4.066 27 C -0.132 4.132 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.396 0.604 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.267 0.733 46 H 0.137 0.863 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.389 -4.285 -10.091 31.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.123 4.123 4 C -0.054 4.054 5 C -0.151 4.151 6 C -0.077 4.077 7 C -0.173 4.173 8 C 0.275 3.725 9 O -0.330 6.330 10 C -0.186 4.186 11 C -0.173 4.173 12 C 0.289 3.711 13 O -0.442 6.442 14 N -0.349 5.349 15 C 0.132 3.868 16 H 0.066 0.934 17 C -0.219 4.219 18 C -0.573 4.573 19 H 0.098 0.902 20 C -0.126 4.126 21 N -0.529 5.529 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.187 1.187 26 C -0.085 4.085 27 C -0.150 4.150 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.144 0.856 36 H 0.151 0.849 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.230 0.770 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.155 0.845 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -29.284 -4.227 -9.798 31.167 hybrid contribution 0.199 -0.320 0.589 0.699 sum -29.085 -4.547 -9.209 30.845 Atomic orbital electron populations 1.21788 0.95499 1.01864 1.01909 1.21514 0.95834 0.95744 1.02624 1.20735 0.90542 0.97751 1.03291 1.20189 0.95937 0.96025 0.93221 1.21011 0.93908 1.02424 0.97791 1.21425 0.94009 0.94418 0.97887 1.20551 0.95100 1.07339 0.94341 1.22603 0.88181 0.70845 0.90872 1.90514 1.71053 1.36315 1.35075 1.21752 0.94593 1.06056 0.96167 1.21458 0.94005 1.05230 0.96642 1.20475 0.83259 0.76744 0.90661 1.90635 1.68389 1.51515 1.33642 1.46203 1.05308 1.72228 1.11143 1.19103 0.92492 0.92876 0.82370 0.93391 1.22447 0.99255 0.99756 1.00417 1.21056 0.96483 1.41548 0.98218 0.90193 1.24839 0.94540 0.94346 0.98870 1.69873 1.06707 1.44144 1.32220 0.86862 0.79485 0.78176 0.83861 1.20337 1.22167 1.18695 1.21574 0.94311 0.94868 0.97705 1.21042 0.94055 1.02060 0.97814 0.92663 0.92559 0.92611 0.91748 0.91656 0.90643 0.90734 0.85591 0.84917 0.87546 0.87448 0.88604 0.88744 0.77015 0.92828 0.93503 0.94575 0.92306 0.84509 0.85407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.15 0.37 -0.29 16 2 C -0.12 -0.61 5.92 -26.74 -0.16 -0.77 16 3 C -0.09 -0.46 5.34 -27.88 -0.15 -0.61 16 4 C -0.05 -0.40 5.14 -104.50 -0.54 -0.93 16 5 C -0.13 -1.06 9.68 -39.65 -0.38 -1.44 16 6 C -0.06 -0.57 9.60 -39.11 -0.38 -0.95 16 7 C -0.17 -1.80 5.87 -105.07 -0.62 -2.42 16 8 C 0.40 4.75 7.12 -30.68 -0.22 4.53 16 9 O -0.45 -6.52 15.98 5.58 0.09 -6.43 16 10 C -0.15 -1.78 3.60 -27.88 -0.10 -1.88 16 11 C -0.13 -1.84 4.99 -27.88 -0.14 -1.98 16 12 C 0.50 9.26 7.79 -10.99 -0.09 9.17 16 13 O -0.56 -12.06 15.64 5.56 0.09 -11.97 16 14 N -0.70 -13.97 5.07 -54.93 -0.28 -14.25 16 15 C 0.24 5.65 2.15 -69.08 -0.15 5.50 16 16 H 0.05 1.27 6.64 -51.93 -0.34 0.92 16 17 C -0.16 -3.61 8.96 37.16 0.33 -3.28 16 18 C -0.54 -14.59 9.31 -34.45 -0.32 -14.91 16 19 H 0.08 2.29 7.98 -52.49 -0.42 1.88 16 20 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 21 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 22 Si 0.89 21.86 24.37 -169.99 -4.14 17.72 16 23 H -0.28 -6.60 6.87 56.52 0.39 -6.21 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 25 H -0.26 -6.42 6.53 56.52 0.37 -6.05 16 26 C -0.07 -0.59 9.47 -39.11 -0.37 -0.96 16 27 C -0.13 -1.03 9.68 -39.65 -0.38 -1.41 16 28 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.13 1.26 7.65 -52.48 -0.40 0.86 16 37 H 0.11 1.22 8.04 -51.93 -0.42 0.80 16 38 H 0.11 1.26 8.05 -51.93 -0.42 0.84 16 39 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 40 H 0.09 1.20 8.10 -51.94 -0.42 0.78 16 41 H 0.40 7.03 8.54 -40.82 -0.35 6.68 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.14 1.07 7.05 -52.49 -0.37 0.70 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 386.50 15.07 5.82 5.82 Total: -1.00 -32.76 386.50 -8.59 -41.35 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.56 Total: 4.10 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.38 Total: -10.53 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.50 Total: -40.05 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.18 Total: -18.41 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.76 -8.59 -41.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194669138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.584 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds