Wall clock time and date at job start Tue Mar 31 2020 12:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 C 1.50704 * 109.47205 * 179.97438 * 3 2 1 5 5 C 1.38409 * 119.82205 * 90.00145 * 4 3 2 6 6 C 1.37885 * 120.16777 * 180.02562 * 5 4 3 7 7 C 1.39853 * 119.82831 * 359.97438 * 6 5 4 8 8 C 1.47165 * 120.17034 * 179.97438 * 7 6 5 9 9 O 1.21248 * 120.00642 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99722 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47014 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47014 * 180.02562 * 11 10 8 13 13 O 1.21277 * 120.00063 * 359.97438 * 12 11 10 14 14 N 1.34773 * 119.99847 * 180.02562 * 12 11 10 15 15 C 1.46504 * 120.00111 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.46891 * 325.00262 * 15 14 12 17 17 C 1.53006 * 109.46883 * 84.99828 * 15 14 12 18 18 C 1.50697 * 109.47650 * 205.00149 * 15 14 12 19 19 H 1.08002 * 119.99362 * 359.97438 * 18 15 14 20 20 C 1.37867 * 120.00258 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00193 * 179.97438 * 20 18 15 22 22 Si 1.86804 * 120.00020 * 0.02562 * 20 18 15 23 23 H 1.48494 * 109.47177 * 89.99899 * 22 20 18 24 24 H 1.48505 * 109.47036 * 210.00183 * 22 20 18 25 25 H 1.48499 * 109.46776 * 329.99672 * 22 20 18 26 26 C 1.39850 * 119.65449 * 0.25259 * 7 6 5 27 27 C 1.37889 * 119.82522 * 359.51348 * 26 7 6 28 28 H 1.09002 * 109.47009 * 59.99869 * 1 2 3 29 29 H 1.08996 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47441 * 300.00232 * 1 2 3 31 31 H 1.09004 * 109.47441 * 239.99768 * 2 1 3 32 32 H 1.09007 * 109.47386 * 119.99888 * 2 1 3 33 33 H 1.08996 * 109.47483 * 60.00061 * 3 2 1 34 34 H 1.09002 * 109.47215 * 300.00005 * 3 2 1 35 35 H 1.08000 * 119.91485 * 0.02562 * 5 4 3 36 36 H 1.08004 * 120.08316 * 179.97438 * 6 5 4 37 37 H 1.09001 * 109.47340 * 60.00001 * 10 8 7 38 38 H 1.09002 * 109.47083 * 300.00132 * 10 8 7 39 39 H 1.08999 * 109.47001 * 60.00707 * 11 10 8 40 40 H 1.08988 * 109.47340 * 300.00233 * 11 10 8 41 41 H 0.97003 * 120.00265 * 0.02562 * 14 12 11 42 42 H 1.09001 * 109.46998 * 59.99945 * 17 15 14 43 43 H 1.09000 * 109.47050 * 180.02562 * 17 15 14 44 44 H 1.09001 * 109.46801 * 300.00349 * 17 15 14 45 45 H 0.97003 * 120.00055 * 179.97438 * 21 20 18 46 46 H 1.08002 * 120.08338 * 179.72575 * 26 7 6 47 47 H 1.07997 * 119.91455 * 180.20446 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2358 1.4423 -1.1999 6 6 5.6146 1.4417 -1.2076 7 6 6.3171 1.4419 0.0017 8 6 7.7887 1.4407 0.0022 9 8 8.3955 1.4401 -1.0475 10 6 8.5417 1.4415 1.3077 11 6 10.0461 1.4394 1.0287 12 6 10.7991 1.4395 2.3341 13 8 10.1923 1.4416 3.3842 14 7 12.1468 1.4383 2.3346 15 6 12.8789 1.4390 3.6036 16 1 12.3317 2.0296 4.3384 17 6 13.0235 0.0023 4.1097 18 6 14.2458 2.0381 3.3948 19 1 14.5400 2.3834 2.4147 20 6 15.1211 2.1444 4.4547 21 7 16.3142 2.6667 4.2723 22 14 14.6130 1.5451 6.1495 23 1 14.9900 0.1171 6.3032 24 1 15.3018 2.3535 7.1874 25 1 13.1431 1.6886 6.3050 26 6 5.6137 1.4372 1.2105 27 6 4.2349 1.4427 1.2016 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.6919 1.4426 -2.1329 36 1 6.1508 1.4412 -2.1452 37 1 8.2775 0.5523 1.8801 38 1 8.2788 2.3323 1.8782 39 1 10.3107 2.3284 0.4562 40 1 10.3086 0.5485 0.4583 41 1 12.6322 1.4378 1.4948 42 1 13.5706 -0.5884 3.3749 43 1 13.5678 0.0028 5.0541 44 1 12.0347 -0.4309 4.2607 45 1 16.9299 2.7418 5.0181 46 1 6.1492 1.4328 2.1484 47 1 3.6902 1.4425 2.1342 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194669138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:30 Heat of formation + Delta-G solvation = -94.015822 kcal Electronic energy + Delta-G solvation = -24954.346690 eV Core-core repulsion = 21293.350138 eV Total energy + Delta-G solvation = -3660.996552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.29833 -40.53562 -39.50177 -36.88834 -35.96214 -34.40601 -34.03850 -32.35755 -31.95816 -31.49516 -28.33916 -27.23593 -26.38641 -23.85127 -23.53778 -22.67270 -21.93543 -21.18372 -20.49841 -19.18763 -18.23023 -17.45094 -17.40008 -16.93770 -16.68465 -16.36187 -15.99857 -15.71777 -15.62065 -15.16237 -14.98109 -14.86004 -14.54950 -14.48405 -14.36273 -14.11200 -14.00129 -13.67592 -13.55155 -13.15353 -13.04872 -12.89363 -12.85744 -12.74075 -12.17800 -12.12842 -12.05161 -12.00433 -11.92298 -11.61034 -11.48448 -11.28013 -10.87758 -10.80343 -10.69570 -9.95690 -9.86315 -9.71046 -8.37990 -6.44357 -0.35340 0.42564 1.27972 1.35796 1.38632 1.45553 1.76231 2.26409 2.38067 2.80033 2.97987 3.06973 3.65735 3.78281 3.84460 4.03053 4.07291 4.12738 4.14987 4.24914 4.32269 4.44069 4.46209 4.51682 4.53745 4.57964 4.67209 4.72040 4.79463 4.86368 4.87272 4.95717 4.97975 5.00618 5.02064 5.08242 5.25963 5.27566 5.33050 5.35013 5.42435 5.43844 5.47835 5.63158 5.65749 5.94705 6.13322 6.47277 6.57490 6.87603 7.18823 7.44299 8.77323 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029616 B = 0.001954 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.216335 B =14327.927897 C =14971.684925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.050 4.050 5 C -0.136 4.136 6 C -0.071 4.071 7 C -0.194 4.194 8 C 0.405 3.595 9 O -0.485 6.485 10 C -0.144 4.144 11 C -0.122 4.122 12 C 0.505 3.495 13 O -0.590 6.590 14 N -0.704 5.704 15 C 0.240 3.760 16 H 0.025 0.975 17 C -0.155 4.155 18 C -0.536 4.536 19 H 0.054 0.946 20 C 0.027 3.973 21 N -0.934 5.934 22 Si 0.942 3.058 23 H -0.260 1.260 24 H -0.292 1.292 25 H -0.260 1.260 26 C -0.069 4.069 27 C -0.136 4.136 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.407 0.593 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.048 0.952 45 H 0.270 0.730 46 H 0.145 0.855 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.988 -5.126 -9.806 33.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.050 4.050 5 C -0.154 4.154 6 C -0.090 4.090 7 C -0.194 4.194 8 C 0.286 3.714 9 O -0.363 6.363 10 C -0.182 4.182 11 C -0.162 4.162 12 C 0.293 3.707 13 O -0.472 6.472 14 N -0.353 5.353 15 C 0.135 3.865 16 H 0.043 0.957 17 C -0.213 4.213 18 C -0.574 4.574 19 H 0.072 0.928 20 C -0.173 4.173 21 N -0.573 5.573 22 Si 0.769 3.231 23 H -0.186 1.186 24 H -0.220 1.220 25 H -0.185 1.185 26 C -0.088 4.088 27 C -0.154 4.154 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.127 0.873 41 H 0.242 0.758 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.163 0.837 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -31.903 -5.078 -9.536 33.683 hybrid contribution 0.920 -0.015 0.430 1.016 sum -30.983 -5.093 -9.106 32.692 Atomic orbital electron populations 1.21778 0.94798 1.02054 1.02317 1.21490 0.96410 0.95442 1.02218 1.20776 0.88913 0.98069 1.04281 1.20497 0.97175 0.94426 0.92877 1.21249 0.93295 1.01812 0.99017 1.21516 0.94916 0.95008 0.97528 1.20489 0.94168 1.09442 0.95344 1.22669 0.88946 0.69650 0.90146 1.90504 1.71706 1.38248 1.35868 1.21741 0.93265 1.06679 0.96504 1.21411 0.94519 1.06329 0.93929 1.21160 0.82501 0.75201 0.91880 1.90617 1.68761 1.52598 1.35242 1.46094 1.06072 1.72843 1.10263 1.18780 0.90648 0.93360 0.83745 0.95702 1.22340 1.00086 0.98571 1.00279 1.21283 0.97973 1.41014 0.97116 0.92783 1.25598 0.94482 0.94617 1.02563 1.69987 1.07968 1.45864 1.33505 0.85955 0.79082 0.78534 0.79503 1.18553 1.21953 1.18498 1.21725 0.94989 0.94581 0.97459 1.21335 0.93730 1.01385 0.98928 0.92235 0.92527 0.92235 0.92184 0.92092 0.89674 0.89787 0.83698 0.85449 0.86754 0.87063 0.87773 0.87262 0.75821 0.91812 0.94095 0.93273 0.92065 0.83678 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.12 -0.96 5.92 30.59 0.18 -0.78 16 3 C -0.08 -0.67 5.34 29.85 0.16 -0.51 16 4 C -0.05 -0.63 5.14 -19.78 -0.10 -0.73 16 5 C -0.14 -1.94 9.68 22.23 0.22 -1.72 16 6 C -0.07 -1.34 9.60 22.58 0.22 -1.12 16 7 C -0.19 -3.89 5.87 -20.15 -0.12 -4.01 16 8 C 0.41 9.42 7.12 28.03 0.20 9.62 16 9 O -0.49 -13.80 15.98 -2.93 -0.05 -13.85 16 10 C -0.14 -3.29 3.60 29.85 0.11 -3.18 16 11 C -0.12 -3.21 4.99 29.85 0.15 -3.06 16 12 C 0.50 18.04 7.79 87.66 0.68 18.72 16 13 O -0.59 -24.75 15.64 -3.02 -0.05 -24.80 16 14 N -0.70 -27.61 5.07 -446.09 -2.26 -29.87 16 15 C 0.24 11.39 2.15 44.25 0.10 11.49 16 16 H 0.03 1.31 6.64 -2.39 -0.02 1.30 16 17 C -0.15 -6.70 8.96 71.98 0.65 -6.05 16 18 C -0.54 -29.50 9.31 25.60 0.24 -29.27 16 19 H 0.05 3.18 7.98 -2.91 -0.02 3.16 16 20 C 0.03 1.53 5.45 84.65 0.46 2.00 16 21 N -0.93 -56.39 13.96 21.44 0.30 -56.09 16 22 Si 0.94 44.75 24.37 68.60 1.67 46.42 16 23 H -0.26 -11.58 6.87 99.48 0.68 -10.90 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.26 -12.20 6.53 99.48 0.65 -11.56 16 26 C -0.07 -1.14 9.47 22.58 0.21 -0.93 16 27 C -0.14 -1.83 9.68 22.23 0.22 -1.61 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 34 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.13 2.43 7.65 -2.91 -0.02 2.41 16 37 H 0.11 2.44 8.04 -2.39 -0.02 2.42 16 38 H 0.11 2.47 8.05 -2.39 -0.02 2.45 16 39 H 0.10 2.61 8.10 -2.39 -0.02 2.59 16 40 H 0.11 2.60 8.10 -2.39 -0.02 2.58 16 41 H 0.41 14.22 8.54 -92.71 -0.79 13.43 16 42 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.04 1.81 3.27 -2.39 -0.01 1.80 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.15 2.04 7.05 -2.91 -0.02 2.02 16 47 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -69.98 386.50 3.98 -66.00 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.09 Total: 23.60 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.27 Total: -11.40 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.96 Total: -85.96 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -0.09 Total: -38.65 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.42 kcal Total: -69.98 3.98 -66.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194669138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.019 kcal (2) G-P(sol) polarization free energy of solvation -69.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds