Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47137 * 2 1 4 4 C 1.50695 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.38401 * 119.82606 * 90.00513 * 4 3 2 6 6 C 1.37886 * 120.17621 * 179.97438 * 5 4 3 7 7 C 1.39854 * 119.82388 * 0.02562 * 6 5 4 8 8 C 1.47164 * 120.17070 * 179.97438 * 7 6 5 9 9 O 1.21253 * 120.00370 * 359.97438 * 8 7 6 10 10 C 1.50707 * 119.99909 * 180.02562 * 8 7 6 11 11 C 1.52993 * 109.47016 * 179.97438 * 10 8 7 12 12 C 1.50697 * 109.46949 * 179.97438 * 11 10 8 13 13 O 1.21281 * 120.00311 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99965 * 179.97438 * 12 11 10 15 15 C 1.46506 * 120.00067 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.46943 * 34.99959 * 15 14 12 17 17 C 1.53000 * 109.47074 * 275.00178 * 15 14 12 18 18 C 1.50696 * 109.46871 * 154.99639 * 15 14 12 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.39856 * 119.65737 * 0.24844 * 7 6 5 27 27 C 1.37891 * 119.82173 * 359.51946 * 26 7 6 28 28 H 1.09004 * 109.46685 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46803 * 299.99434 * 1 2 3 30 30 H 1.09002 * 109.47236 * 59.99901 * 1 2 3 31 31 H 1.09004 * 109.47008 * 240.00542 * 2 1 3 32 32 H 1.08997 * 109.47143 * 120.01020 * 2 1 3 33 33 H 1.09004 * 109.46729 * 60.00370 * 3 2 1 34 34 H 1.08993 * 109.47479 * 300.00609 * 3 2 1 35 35 H 1.08000 * 119.91257 * 0.02562 * 5 4 3 36 36 H 1.08004 * 120.08863 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47356 * 59.99629 * 10 8 7 38 38 H 1.08997 * 109.46694 * 299.99445 * 10 8 7 39 39 H 1.08996 * 109.47709 * 59.99321 * 11 10 8 40 40 H 1.09005 * 109.47272 * 299.99451 * 11 10 8 41 41 H 0.97000 * 119.99961 * 359.97438 * 14 12 11 42 42 H 1.08996 * 109.47024 * 59.99854 * 17 15 14 43 43 H 1.08998 * 109.46637 * 179.97438 * 17 15 14 44 44 H 1.08997 * 109.46749 * 299.99711 * 17 15 14 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 46 46 H 1.07996 * 120.08720 * 179.72748 * 26 7 6 47 47 H 1.07998 * 119.91256 * 180.20653 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2358 1.4424 -1.1998 6 6 5.6147 1.4429 -1.2076 7 6 6.3171 1.4430 0.0017 8 6 7.7888 1.4430 0.0023 9 8 8.3955 1.4425 -1.0475 10 6 8.5418 1.4425 1.3077 11 6 10.0461 1.4419 1.0287 12 6 10.7990 1.4421 2.3341 13 8 10.1923 1.4430 3.3842 14 7 12.1469 1.4411 2.3346 15 6 12.8789 1.4418 3.6036 16 1 12.3308 0.8534 4.3396 17 6 13.0258 2.8792 4.1069 18 6 14.2448 0.8401 3.3959 19 1 14.5385 0.4924 2.4165 20 6 15.1197 0.7335 4.4563 21 7 16.3120 0.2089 4.2749 22 14 14.6115 1.3343 6.1504 23 1 14.9901 2.7621 6.3035 24 1 13.1414 1.1926 6.3055 25 1 15.2990 0.5258 7.1891 26 6 5.6138 1.4373 1.2106 27 6 4.2349 1.4416 1.2017 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5140 0.8899 33 1 1.6767 1.9562 0.8901 34 1 1.6767 1.9564 -0.8898 35 1 3.6920 1.4428 -2.1328 36 1 6.1508 1.4425 -2.1452 37 1 8.2782 0.5524 1.8789 38 1 8.2783 2.3323 1.8794 39 1 10.3100 2.3318 0.4573 40 1 10.3093 0.5519 0.4571 41 1 12.6322 1.4400 1.4947 42 1 12.0378 3.3143 4.2571 43 1 13.5701 2.8796 5.0513 44 1 13.5739 3.4675 3.3710 45 1 16.9276 0.1343 5.0208 46 1 6.1492 1.4328 2.1484 47 1 3.6903 1.4406 2.1343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194669150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -94.071649 kcal Electronic energy + Delta-G solvation = -24953.795280 eV Core-core repulsion = 21292.796307 eV Total energy + Delta-G solvation = -3660.998973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.29763 -40.53475 -39.50108 -36.88758 -35.96244 -34.40555 -34.03895 -32.35759 -31.95770 -31.49490 -28.33922 -27.23574 -26.38625 -23.85121 -23.53768 -22.67238 -21.93626 -21.18366 -20.49839 -19.18804 -18.23032 -17.44940 -17.40048 -16.93804 -16.68436 -16.36191 -15.99905 -15.71717 -15.61977 -15.16248 -14.97646 -14.86506 -14.56884 -14.46521 -14.35327 -14.11131 -14.01619 -13.67494 -13.54217 -13.16699 -13.03798 -12.89484 -12.85806 -12.74111 -12.17755 -12.12750 -12.05187 -12.00474 -11.92413 -11.61276 -11.48556 -11.28028 -10.87757 -10.80354 -10.69583 -9.95681 -9.86281 -9.71033 -8.38054 -6.44342 -0.35368 0.42565 1.27925 1.35772 1.38609 1.45534 1.76203 2.26390 2.38065 2.80006 2.97920 3.06966 3.65745 3.78335 3.84472 4.03078 4.07317 4.12703 4.14962 4.24867 4.32233 4.44055 4.46260 4.51671 4.53646 4.58028 4.67227 4.72082 4.79493 4.86362 4.87173 4.95694 4.97980 5.00677 5.01943 5.08247 5.25950 5.27502 5.33106 5.35007 5.42426 5.43895 5.47754 5.63153 5.65761 5.94711 6.13327 6.47258 6.57503 6.87594 7.18757 7.44295 8.77272 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028672 B = 0.001953 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.319046 B =14335.910963 C =14903.653448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.083 4.083 4 C -0.050 4.050 5 C -0.136 4.136 6 C -0.071 4.071 7 C -0.194 4.194 8 C 0.405 3.595 9 O -0.485 6.485 10 C -0.144 4.144 11 C -0.122 4.122 12 C 0.505 3.495 13 O -0.590 6.590 14 N -0.704 5.704 15 C 0.240 3.760 16 H 0.025 0.975 17 C -0.155 4.155 18 C -0.536 4.536 19 H 0.054 0.946 20 C 0.027 3.973 21 N -0.934 5.934 22 Si 0.942 3.058 23 H -0.260 1.260 24 H -0.260 1.260 25 H -0.292 1.292 26 C -0.070 4.070 27 C -0.136 4.136 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.407 0.593 42 H 0.048 0.952 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.270 0.730 46 H 0.145 0.855 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.984 3.841 -9.816 33.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.120 4.120 4 C -0.050 4.050 5 C -0.154 4.154 6 C -0.090 4.090 7 C -0.194 4.194 8 C 0.286 3.714 9 O -0.363 6.363 10 C -0.182 4.182 11 C -0.162 4.162 12 C 0.293 3.707 13 O -0.472 6.472 14 N -0.353 5.353 15 C 0.135 3.865 16 H 0.043 0.957 17 C -0.213 4.213 18 C -0.574 4.574 19 H 0.072 0.928 20 C -0.173 4.173 21 N -0.573 5.573 22 Si 0.769 3.231 23 H -0.185 1.185 24 H -0.185 1.185 25 H -0.219 1.219 26 C -0.088 4.088 27 C -0.154 4.154 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.146 0.854 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.242 0.758 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.163 0.837 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -31.899 3.789 -9.545 33.511 hybrid contribution 0.922 -0.029 0.431 1.018 sum -30.977 3.760 -9.114 32.509 Atomic orbital electron populations 1.21779 0.94780 1.02045 1.02333 1.21494 0.96430 0.95484 1.02195 1.20772 0.88907 0.98027 1.04305 1.20496 0.97177 0.94426 0.92875 1.21247 0.93295 1.01811 0.99020 1.21517 0.94916 0.95006 0.97527 1.20490 0.94167 1.09442 0.95344 1.22672 0.88947 0.69649 0.90146 1.90506 1.71710 1.38250 1.35862 1.21738 0.93267 1.06677 0.96503 1.21411 0.94518 1.06332 0.93928 1.21162 0.82502 0.75199 0.91881 1.90618 1.68766 1.52599 1.35237 1.46096 1.06072 1.72846 1.10262 1.18780 0.90645 0.93359 0.83747 0.95708 1.22336 1.00088 0.98560 1.00290 1.21286 0.98052 1.40906 0.97144 0.92782 1.25604 0.94489 0.94623 1.02559 1.69988 1.08015 1.45805 1.33506 0.85955 0.79090 0.78536 0.79498 1.18549 1.18496 1.21950 1.21725 0.94990 0.94585 0.97457 1.21338 0.93730 1.01382 0.98928 0.92564 0.92205 0.92212 0.92218 0.92130 0.89640 0.89754 0.83697 0.85446 0.87081 0.86740 0.87253 0.87776 0.75821 0.93274 0.94094 0.91808 0.92064 0.83681 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 71.98 0.71 -0.28 16 2 C -0.12 -0.98 5.92 30.59 0.18 -0.80 16 3 C -0.08 -0.67 5.34 29.85 0.16 -0.51 16 4 C -0.05 -0.63 5.14 -19.79 -0.10 -0.73 16 5 C -0.14 -1.94 9.68 22.22 0.22 -1.72 16 6 C -0.07 -1.34 9.60 22.58 0.22 -1.12 16 7 C -0.19 -3.89 5.87 -20.15 -0.12 -4.01 16 8 C 0.41 9.42 7.12 28.03 0.20 9.62 16 9 O -0.49 -13.80 15.98 -2.95 -0.05 -13.85 16 10 C -0.14 -3.29 3.60 29.85 0.11 -3.18 16 11 C -0.12 -3.21 4.99 29.84 0.15 -3.06 16 12 C 0.50 18.04 7.79 87.66 0.68 18.72 16 13 O -0.59 -24.76 15.64 -3.03 -0.05 -24.80 16 14 N -0.70 -27.61 5.07 -446.08 -2.26 -29.87 16 15 C 0.24 11.39 2.15 44.24 0.10 11.49 16 16 H 0.03 1.31 6.63 -2.38 -0.02 1.29 16 17 C -0.15 -6.70 8.97 71.98 0.65 -6.05 16 18 C -0.54 -29.51 9.31 25.60 0.24 -29.27 16 19 H 0.05 3.18 7.98 -2.91 -0.02 3.16 16 20 C 0.03 1.53 5.45 84.66 0.46 1.99 16 21 N -0.93 -56.39 13.96 21.45 0.30 -56.09 16 22 Si 0.94 44.75 24.37 68.60 1.67 46.42 16 23 H -0.26 -11.58 6.87 99.48 0.68 -10.90 16 24 H -0.26 -12.21 6.53 99.48 0.65 -11.56 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 C -0.07 -1.14 9.47 22.58 0.21 -0.93 16 27 C -0.14 -1.83 9.68 22.23 0.22 -1.61 16 28 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.55 8.08 -2.39 -0.02 0.53 16 34 H 0.08 0.54 8.08 -2.39 -0.02 0.53 16 35 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.13 2.43 7.65 -2.91 -0.02 2.41 16 37 H 0.11 2.47 8.04 -2.39 -0.02 2.45 16 38 H 0.11 2.45 8.05 -2.39 -0.02 2.43 16 39 H 0.11 2.60 8.10 -2.39 -0.02 2.58 16 40 H 0.10 2.61 8.10 -2.38 -0.02 2.59 16 41 H 0.41 14.22 8.54 -92.71 -0.79 13.43 16 42 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.81 3.28 -2.39 -0.01 1.80 16 44 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.27 15.28 8.31 -92.71 -0.77 14.50 16 46 H 0.15 2.04 7.05 -2.91 -0.02 2.02 16 47 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -69.99 386.51 3.98 -66.01 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.09 Total: 23.63 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: 4.27 Total: -11.45 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -1.96 Total: -85.96 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.09 Total: -38.65 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.67 Total: 46.42 kcal Total: -69.99 3.98 -66.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194669150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.062 kcal (2) G-P(sol) polarization free energy of solvation -69.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds