Wall clock time and date at job start Tue Mar 31 2020 13:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 C 1.52995 * 109.47155 * 120.00391 * 2 1 3 5 5 C 1.53000 * 109.47229 * 65.00183 * 4 2 1 6 6 C 1.53008 * 109.46969 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46632 * 179.97438 * 6 5 4 8 8 C 1.34785 * 119.99521 * 179.97438 * 7 6 5 9 9 O 1.21715 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.46255 * 119.99650 * 180.27579 * 8 7 6 11 11 C 1.35025 * 119.99918 * 172.93880 * 10 8 7 12 12 C 1.46960 * 119.99925 * 348.68186 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.40557 * 12 11 10 14 14 C 1.37594 * 119.89934 * 179.76739 * 13 12 11 15 15 C 1.39184 * 120.09927 * 0.50673 * 14 13 12 16 16 O 1.35570 * 119.89843 * 179.76454 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33946 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31506 * 119.99512 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47192 * 89.99431 * 21 19 17 23 23 H 1.48503 * 109.47066 * 209.99637 * 21 19 17 24 24 H 1.48500 * 109.47078 * 329.99517 * 21 19 17 25 25 C 1.39177 * 120.19984 * 359.74795 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.08993 * 109.47034 * 60.00030 * 1 2 3 28 28 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46861 * 299.99817 * 1 2 3 30 30 H 1.09005 * 109.47159 * 240.00496 * 2 1 3 31 31 H 1.08992 * 109.47021 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47281 * 300.00447 * 3 2 1 33 33 H 1.09005 * 109.46637 * 60.00176 * 3 2 1 34 34 H 1.09004 * 109.47004 * 304.99742 * 4 2 1 35 35 H 1.09005 * 109.47172 * 185.00355 * 4 2 1 36 36 H 1.08992 * 109.47168 * 60.00082 * 5 4 2 37 37 H 1.09003 * 109.46680 * 299.99598 * 5 4 2 38 38 H 1.08992 * 109.47442 * 59.99841 * 6 5 4 39 39 H 1.09003 * 109.46758 * 299.99142 * 6 5 4 40 40 H 0.96995 * 120.00513 * 359.97438 * 7 6 5 41 41 H 1.08005 * 120.00497 * 352.93596 * 10 8 7 42 42 H 1.07997 * 120.00191 * 168.68069 * 11 10 8 43 43 H 1.08007 * 120.05004 * 0.02562 * 13 12 11 44 44 H 1.07995 * 119.95777 * 180.23340 * 14 13 12 45 45 H 0.97008 * 119.99650 * 180.02562 * 20 19 17 46 46 H 1.07998 * 119.94407 * 179.97438 * 25 15 14 47 47 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 6 2.1448 -2.9167 2.4374 7 7 1.7567 -4.3281 2.3788 8 6 2.1002 -5.1635 3.3793 9 8 2.7332 -4.7453 4.3310 10 6 1.7181 -6.5739 3.3180 11 6 2.1813 -7.4398 4.2447 12 6 3.2559 -7.0310 5.1601 13 6 4.3616 -6.3229 4.6734 14 6 5.3629 -5.9380 5.5350 15 6 5.2831 -6.2606 6.8865 16 8 6.2744 -5.8835 7.7310 17 6 6.0837 -6.1221 9.0437 18 1 5.2109 -6.6666 9.3724 19 6 7.0086 -5.6682 9.9727 20 7 6.8227 -5.9014 11.2535 21 14 8.5179 -4.7258 9.4043 22 1 8.2107 -3.2733 9.3699 23 1 9.6392 -4.9725 10.3461 24 1 8.9037 -5.1825 8.0449 25 6 4.1886 -6.9689 7.3738 26 6 3.1798 -7.3529 6.5206 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6443 1.2951 36 1 2.0699 -2.6550 0.3001 37 1 0.5489 -2.2724 1.1419 38 1 1.7099 -2.4572 3.3248 39 1 3.2311 -2.8399 2.4836 40 1 1.2526 -4.6615 1.6202 41 1 1.0652 -6.9229 2.5315 42 1 1.7622 -8.4327 4.3132 43 1 4.4262 -6.0756 3.6240 44 1 6.2143 -5.3886 5.1613 45 1 7.4692 -5.5837 11.9032 46 1 4.1311 -7.2173 8.4232 47 1 2.3306 -7.9021 6.8998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255010320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:59 Heat of formation + Delta-G solvation = -35.512236 kcal Electronic energy + Delta-G solvation = -25335.543448 eV Core-core repulsion = 21677.083802 eV Total energy + Delta-G solvation = -3658.459646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -39.80042 -38.86444 -37.59217 -36.60922 -34.83329 -33.06654 -32.28383 -31.45125 -30.18747 -28.32903 -27.54977 -26.30145 -25.24041 -23.09329 -21.93030 -21.82735 -20.93930 -20.26508 -19.15384 -17.80245 -17.34647 -16.78619 -16.17156 -15.84948 -15.12349 -14.83564 -14.73065 -14.38051 -14.23693 -13.81556 -13.80204 -13.66439 -13.57720 -13.28206 -12.86512 -12.61264 -12.59782 -12.45555 -12.22878 -12.07233 -12.05535 -11.94224 -11.45281 -11.42023 -11.04909 -10.93834 -10.88188 -10.81024 -10.74594 -10.64580 -10.12915 -9.51303 -9.43804 -9.20041 -8.96941 -8.73539 -7.99103 -6.95975 -6.40367 -4.04109 1.20167 2.35147 2.63980 3.24417 3.28629 3.32227 3.43035 3.61941 4.26046 4.38019 4.49937 4.54476 4.64073 4.82288 4.87239 4.91615 5.09181 5.14800 5.16609 5.18970 5.26545 5.30855 5.38052 5.40995 5.52064 5.55001 5.61431 5.66668 5.69224 5.78279 5.80092 5.82316 5.89901 6.03081 6.06153 6.20068 6.28422 6.38853 6.52359 6.53047 6.69023 6.94421 7.20106 7.33749 7.40373 7.65909 7.69469 7.86617 8.08330 8.52881 8.94948 9.59555 10.67017 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.002564 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.979024 B =10916.242938 C =12668.248704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.149 4.149 4 C -0.114 4.114 5 C -0.131 4.131 6 C 0.120 3.880 7 N -0.738 5.738 8 C 0.537 3.463 9 O -0.512 6.512 10 C -0.264 4.264 11 C 0.024 3.976 12 C -0.181 4.181 13 C 0.010 3.990 14 C -0.203 4.203 15 C 0.177 3.823 16 O -0.213 6.213 17 C -0.387 4.387 18 H 0.108 0.892 19 C 0.063 3.937 20 N -0.877 5.877 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.238 4.238 26 C -0.044 4.044 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.395 0.605 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.280 0.720 46 H 0.132 0.868 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.799 6.055 -23.558 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.169 4.169 6 C -0.004 4.004 7 N -0.391 5.391 8 C 0.326 3.674 9 O -0.389 6.389 10 C -0.285 4.285 11 C 0.005 3.995 12 C -0.181 4.181 13 C -0.008 4.008 14 C -0.222 4.222 15 C 0.124 3.876 16 O -0.117 6.117 17 C -0.463 4.463 18 H 0.125 0.875 19 C -0.141 4.141 20 N -0.515 5.515 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.257 4.257 26 C -0.062 4.062 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.228 0.772 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.090 0.910 46 H 0.150 0.850 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.006 6.523 -22.638 26.442 hybrid contribution 0.142 0.272 -0.406 0.509 sum -11.864 6.795 -23.044 26.795 Atomic orbital electron populations 1.21905 0.95312 1.01827 1.01679 1.21114 0.95884 0.96226 0.98298 1.21849 1.01073 0.95971 1.01734 1.21578 1.01348 0.94135 0.98117 1.21847 1.01552 0.95789 0.97667 1.21288 1.00298 0.80797 0.98023 1.45997 1.59348 1.09764 1.23945 1.18509 0.79475 0.87027 0.82344 1.90993 1.37985 1.77779 1.32127 1.22634 1.08793 0.92889 1.04160 1.22348 0.90099 0.97066 0.90007 1.18359 0.96858 1.09327 0.93599 1.20442 0.91409 0.91438 0.97520 1.20000 1.02034 1.08990 0.91166 1.19271 0.87071 0.91423 0.89869 1.83504 1.38042 1.71785 1.18409 1.20829 1.11119 1.36829 0.77479 0.87472 1.24493 0.98788 0.96764 0.94013 1.69629 1.36824 1.44793 1.00245 0.86178 0.81063 0.80240 0.79429 1.19834 1.20765 1.18313 1.21069 0.96496 1.07112 1.01035 1.20795 0.96714 0.96596 0.92090 0.92938 0.92457 0.92645 0.91286 0.92624 0.92813 0.92622 0.91519 0.91510 0.91476 0.91227 0.91739 0.91654 0.77205 0.86092 0.85909 0.87941 0.86857 0.91026 0.85025 0.87316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 8.95 37.16 0.33 -0.53 16 2 C -0.10 -0.59 2.92 -90.62 -0.26 -0.86 16 3 C -0.15 -0.90 9.19 37.16 0.34 -0.56 16 4 C -0.11 -0.79 4.68 -26.73 -0.13 -0.92 16 5 C -0.13 -0.91 5.08 -26.73 -0.14 -1.05 16 6 C 0.12 1.24 5.67 -4.04 -0.02 1.21 16 7 N -0.74 -7.80 5.55 -61.75 -0.34 -8.14 16 8 C 0.54 7.75 6.77 -13.04 -0.09 7.66 16 9 O -0.51 -9.87 12.17 5.18 0.06 -9.81 16 10 C -0.26 -3.22 9.90 -37.50 -0.37 -3.59 16 11 C 0.02 0.33 9.80 -37.19 -0.36 -0.03 16 12 C -0.18 -3.28 4.54 -105.03 -0.48 -3.76 16 13 C 0.01 0.20 6.59 -39.15 -0.26 -0.06 16 14 C -0.20 -4.45 9.97 -39.47 -0.39 -4.84 16 15 C 0.18 4.36 6.66 -38.88 -0.26 4.10 16 16 O -0.21 -5.88 8.57 0.74 0.01 -5.87 16 17 C -0.39 -11.24 9.94 30.91 0.31 -10.93 16 18 H 0.11 3.17 5.41 -52.49 -0.28 2.89 16 19 C 0.06 1.80 5.49 -17.51 -0.10 1.71 16 20 N -0.88 -25.75 13.96 55.48 0.77 -24.97 16 21 Si 0.91 22.21 28.62 -169.99 -4.86 17.34 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 25 C -0.24 -5.46 9.14 -39.47 -0.36 -5.82 16 26 C -0.04 -0.85 9.78 -39.15 -0.38 -1.23 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.39 2.89 8.45 -40.82 -0.34 2.55 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.10 1.80 7.02 -52.48 -0.37 1.44 16 44 H 0.11 2.35 8.06 -52.49 -0.42 1.93 16 45 H 0.28 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.13 3.13 5.62 -52.49 -0.29 2.83 16 47 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -32.85 385.04 -8.63 -41.48 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -7.45 Total: 3.67 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.62 Total: -19.49 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.43 Total: -33.11 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.07 Total: -15.68 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.85 -8.63 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255010320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.964 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds