Wall clock time and date at job start Tue Mar 31 2020 13:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47245 * 2 1 4 4 C 1.52995 * 109.47155 * 120.00391 * 2 1 3 5 5 C 1.53000 * 109.47229 * 65.00183 * 4 2 1 6 6 C 1.53008 * 109.46969 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46632 * 179.97438 * 6 5 4 8 8 C 1.34785 * 119.99521 * 179.97438 * 7 6 5 9 9 O 1.21715 * 120.00261 * 359.97438 * 8 7 6 10 10 C 1.46255 * 119.99650 * 180.27579 * 8 7 6 11 11 C 1.35025 * 119.99918 * 172.93880 * 10 8 7 12 12 C 1.46960 * 119.99925 * 348.68186 * 11 10 8 13 13 C 1.40028 * 120.10009 * 316.40557 * 12 11 10 14 14 C 1.37594 * 119.89934 * 179.76739 * 13 12 11 15 15 C 1.39184 * 120.09927 * 0.50673 * 14 13 12 16 16 O 1.35570 * 119.89843 * 179.76454 * 15 14 13 17 17 C 1.34783 * 116.99886 * 174.33946 * 16 15 14 18 18 H 1.07998 * 119.99829 * 5.06153 * 17 16 15 19 19 C 1.38721 * 119.99912 * 185.05607 * 17 16 15 20 20 N 1.31506 * 119.99512 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00019 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.47192 * 89.99431 * 21 19 17 23 23 H 1.48503 * 109.47066 * 209.99637 * 21 19 17 24 24 H 1.48500 * 109.47078 * 329.99517 * 21 19 17 25 25 C 1.39177 * 120.19984 * 359.74795 * 15 14 13 26 26 C 1.37596 * 120.10326 * 359.97438 * 25 15 14 27 27 H 1.08993 * 109.47034 * 60.00030 * 1 2 3 28 28 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46861 * 299.99817 * 1 2 3 30 30 H 1.09005 * 109.47159 * 240.00496 * 2 1 3 31 31 H 1.08992 * 109.47021 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47281 * 300.00447 * 3 2 1 33 33 H 1.09005 * 109.46637 * 60.00176 * 3 2 1 34 34 H 1.09004 * 109.47004 * 304.99742 * 4 2 1 35 35 H 1.09005 * 109.47172 * 185.00355 * 4 2 1 36 36 H 1.08992 * 109.47168 * 60.00082 * 5 4 2 37 37 H 1.09003 * 109.46680 * 299.99598 * 5 4 2 38 38 H 1.08992 * 109.47442 * 59.99841 * 6 5 4 39 39 H 1.09003 * 109.46758 * 299.99142 * 6 5 4 40 40 H 0.96995 * 120.00513 * 359.97438 * 7 6 5 41 41 H 1.08005 * 120.00497 * 352.93596 * 10 8 7 42 42 H 1.07997 * 120.00191 * 168.68069 * 11 10 8 43 43 H 1.08007 * 120.05004 * 0.02562 * 13 12 11 44 44 H 1.07995 * 119.95777 * 180.23340 * 14 13 12 45 45 H 0.97008 * 119.99650 * 180.02562 * 20 19 17 46 46 H 1.07998 * 119.94407 * 179.97438 * 25 15 14 47 47 H 1.08004 * 120.04756 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 6 2.1448 -2.9167 2.4374 7 7 1.7567 -4.3281 2.3788 8 6 2.1002 -5.1635 3.3793 9 8 2.7332 -4.7453 4.3310 10 6 1.7181 -6.5739 3.3180 11 6 2.1813 -7.4398 4.2447 12 6 3.2559 -7.0310 5.1601 13 6 4.3616 -6.3229 4.6734 14 6 5.3629 -5.9380 5.5350 15 6 5.2831 -6.2606 6.8865 16 8 6.2744 -5.8835 7.7310 17 6 6.0837 -6.1221 9.0437 18 1 5.2109 -6.6666 9.3724 19 6 7.0086 -5.6682 9.9727 20 7 6.8227 -5.9014 11.2535 21 14 8.5179 -4.7258 9.4043 22 1 8.2107 -3.2733 9.3699 23 1 9.6392 -4.9725 10.3461 24 1 8.9037 -5.1825 8.0449 25 6 4.1886 -6.9689 7.3738 26 6 3.1798 -7.3529 6.5206 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6443 1.2951 36 1 2.0699 -2.6550 0.3001 37 1 0.5489 -2.2724 1.1419 38 1 1.7099 -2.4572 3.3248 39 1 3.2311 -2.8399 2.4836 40 1 1.2526 -4.6615 1.6202 41 1 1.0652 -6.9229 2.5315 42 1 1.7622 -8.4327 4.3132 43 1 4.4262 -6.0756 3.6240 44 1 6.2143 -5.3886 5.1613 45 1 7.4692 -5.5837 11.9032 46 1 4.1311 -7.2173 8.4232 47 1 2.3306 -7.9021 6.8998 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255010320.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:58 Heat of formation + Delta-G solvation = -55.547150 kcal Electronic energy + Delta-G solvation = -25336.412227 eV Core-core repulsion = 21677.083802 eV Total energy + Delta-G solvation = -3659.328425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.15286 -40.47173 -38.51031 -37.95520 -35.81102 -34.64718 -34.08922 -32.25293 -31.86164 -29.80787 -28.01007 -27.52862 -26.84621 -24.26587 -23.60022 -22.74970 -22.26877 -20.86720 -20.38343 -19.68652 -19.12486 -18.08061 -17.02368 -16.80094 -16.57965 -16.16148 -15.94109 -15.71493 -15.59811 -15.38113 -14.89759 -14.78765 -14.68492 -14.32981 -14.25098 -14.24029 -14.03375 -13.72467 -13.31316 -13.09941 -13.07644 -12.67838 -12.61389 -12.56249 -12.50142 -12.28768 -12.00688 -11.96140 -11.57462 -11.43987 -11.36085 -11.34311 -11.02711 -10.68138 -10.44598 -10.02334 -9.59010 -8.61308 -8.52682 -6.23538 -0.03276 0.67532 1.08802 1.27630 1.34148 1.49169 2.26029 2.39485 2.49254 2.79143 3.03826 3.22347 3.79032 3.95414 3.96373 4.02244 4.07080 4.12484 4.16655 4.22451 4.34104 4.52620 4.54665 4.58316 4.68761 4.73726 4.77570 4.82575 4.89414 4.92419 4.97018 5.03747 5.10880 5.18380 5.21312 5.22754 5.25534 5.34299 5.40669 5.44682 5.50964 5.55394 5.58563 5.67406 5.77369 5.82771 5.89751 6.25752 6.74810 6.81424 7.47134 7.57258 8.58920 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012771 B = 0.002564 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.979024 B =10916.242938 C =12668.248704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.115 4.115 5 C -0.117 4.117 6 C 0.119 3.881 7 N -0.716 5.716 8 C 0.522 3.478 9 O -0.570 6.570 10 C -0.226 4.226 11 C -0.001 4.001 12 C -0.151 4.151 13 C 0.011 3.989 14 C -0.210 4.210 15 C 0.132 3.868 16 O -0.244 6.244 17 C -0.401 4.401 18 H 0.082 0.918 19 C 0.010 3.990 20 N -0.920 5.920 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.262 1.262 24 H -0.265 1.265 25 C -0.253 4.253 26 C -0.053 4.053 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.416 0.584 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.286 0.714 46 H 0.109 0.891 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.193 5.650 -28.064 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.005 4.005 7 N -0.368 5.368 8 C 0.313 3.687 9 O -0.451 6.451 10 C -0.246 4.246 11 C -0.020 4.020 12 C -0.151 4.151 13 C -0.007 4.007 14 C -0.229 4.229 15 C 0.083 3.917 16 O -0.152 6.152 17 C -0.477 4.477 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.561 5.561 21 Si 0.792 3.208 22 H -0.193 1.193 23 H -0.186 1.186 24 H -0.189 1.189 25 C -0.272 4.272 26 C -0.071 4.071 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.253 0.747 41 H 0.193 0.807 42 H 0.186 0.814 43 H 0.143 0.857 44 H 0.135 0.865 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.463 6.108 -27.234 31.435 hybrid contribution 0.496 0.404 0.577 0.861 sum -13.966 6.512 -26.657 30.791 Atomic orbital electron populations 1.21905 0.94822 1.02251 1.01702 1.21093 0.96240 0.96036 0.97850 1.21866 1.00939 0.96142 1.01862 1.21576 1.00893 0.94417 0.98393 1.21755 1.02300 0.95127 0.96242 1.21291 0.99198 0.80918 0.99068 1.45855 1.57967 1.09471 1.23553 1.19143 0.78916 0.88503 0.82158 1.90996 1.40697 1.78893 1.34523 1.23098 1.07124 0.90909 1.03477 1.22581 0.89971 0.99795 0.89649 1.18937 0.97180 1.05243 0.93771 1.20735 0.90907 0.90949 0.98139 1.20243 1.03080 1.09140 0.90459 1.19746 0.87885 0.93383 0.90705 1.83448 1.39689 1.74418 1.17598 1.20757 1.10848 1.37239 0.78858 0.90061 1.25292 1.01683 0.97794 0.94051 1.69705 1.38396 1.46801 1.01169 0.85234 0.77916 0.78813 0.78816 1.19292 1.18595 1.18944 1.21121 0.97584 1.07792 1.00738 1.21162 0.96686 0.96804 0.92467 0.92369 0.91802 0.93234 0.90606 0.92899 0.92097 0.93111 0.92430 0.92275 0.89965 0.89822 0.93720 0.93502 0.74686 0.80674 0.81443 0.85735 0.86549 0.90470 0.87270 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.95 71.98 0.64 -0.72 16 2 C -0.09 -0.95 2.92 -10.80 -0.03 -0.99 16 3 C -0.15 -1.62 9.19 71.98 0.66 -0.96 16 4 C -0.11 -1.43 4.68 30.59 0.14 -1.29 16 5 C -0.12 -1.29 5.08 30.60 0.16 -1.13 16 6 C 0.12 2.24 5.67 86.38 0.49 2.73 16 7 N -0.72 -12.35 5.55 -467.49 -2.60 -14.95 16 8 C 0.52 13.14 6.77 86.32 0.58 13.72 16 9 O -0.57 -21.10 12.17 -4.40 -0.05 -21.15 16 10 C -0.23 -4.12 9.90 23.62 0.23 -3.89 16 11 C 0.00 -0.01 9.80 23.82 0.23 0.22 16 12 C -0.15 -5.11 4.54 -20.13 -0.09 -5.20 16 13 C 0.01 0.41 6.59 22.55 0.15 0.56 16 14 C -0.21 -9.47 9.97 22.35 0.22 -9.25 16 15 C 0.13 6.91 6.66 22.72 0.15 7.06 16 16 O -0.24 -14.40 8.57 -20.28 -0.17 -14.57 16 17 C -0.40 -25.03 9.94 67.94 0.68 -24.35 16 18 H 0.08 5.29 5.41 -2.91 -0.02 5.28 16 19 C 0.01 0.63 5.49 84.86 0.47 1.09 16 20 N -0.92 -56.80 13.96 21.62 0.30 -56.50 16 21 Si 0.97 47.76 28.62 68.60 1.96 49.73 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 25 C -0.25 -12.25 9.14 22.34 0.20 -12.04 16 26 C -0.05 -2.03 9.78 22.55 0.22 -1.81 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.49 6.57 -2.39 -0.02 0.48 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.74 6.57 -2.39 -0.02 0.72 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.42 3.78 8.45 -92.71 -0.78 3.00 16 41 H 0.18 1.44 8.06 -2.91 -0.02 1.41 16 42 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 43 H 0.12 4.08 7.02 -2.91 -0.02 4.06 16 44 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 45 H 0.29 16.09 8.31 -92.70 -0.77 15.32 16 46 H 0.11 5.68 5.62 -2.91 -0.02 5.67 16 47 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -78.77 385.04 4.73 -74.04 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.18 Total: 19.65 kcal Atomic # 6 Polarization: -41.35 SS G_CDS: 5.11 Total: -36.24 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -2.29 Total: -71.45 kcal Atomic # 8 Polarization: -35.50 SS G_CDS: -0.23 Total: -35.73 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 1.96 Total: 49.73 kcal Total: -78.77 4.73 -74.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255010320.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.489 kcal (2) G-P(sol) polarization free energy of solvation -78.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds