Wall clock time and date at job start Tue Mar 31 2020 13:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46922 * 2 1 4 4 C 1.52998 * 109.46991 * 304.28073 * 3 2 1 5 5 C 1.53000 * 109.46906 * 295.48588 * 4 3 2 6 6 C 1.53000 * 109.46994 * 64.27866 * 3 2 1 7 7 N 1.46509 * 109.46827 * 65.00056 * 6 3 2 8 8 C 1.34775 * 119.99678 * 179.97438 * 7 6 3 9 9 O 1.21723 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.46250 * 120.00059 * 180.27478 * 8 7 6 11 11 C 1.35024 * 120.00162 * 172.71928 * 10 8 7 12 12 C 1.46956 * 120.00161 * 348.85258 * 11 10 8 13 13 C 1.40027 * 120.09636 * 316.34773 * 12 11 10 14 14 C 1.37603 * 119.89490 * 179.76349 * 13 12 11 15 15 C 1.39178 * 120.10047 * 0.52071 * 14 13 12 16 16 O 1.35565 * 119.89658 * 179.76328 * 15 14 13 17 17 C 1.34784 * 116.99967 * 185.79974 * 16 15 14 18 18 H 1.08003 * 120.00146 * 5.24483 * 17 16 15 19 19 C 1.38718 * 120.00096 * 185.25118 * 17 16 15 20 20 N 1.31512 * 120.00026 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99846 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47384 * 59.99723 * 21 19 17 23 23 H 1.48506 * 109.47013 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47049 * 299.99144 * 21 19 17 25 25 C 1.39179 * 120.20330 * 359.73227 * 15 14 13 26 26 C 1.37597 * 120.10220 * 0.02562 * 25 15 14 27 27 H 1.08996 * 109.47198 * 295.63405 * 1 2 3 28 28 H 1.08995 * 109.47014 * 55.63631 * 1 2 3 29 29 H 1.08998 * 109.46687 * 175.63637 * 1 2 3 30 30 H 1.08993 * 109.47465 * 239.99966 * 2 1 3 31 31 H 1.09002 * 109.47142 * 120.00009 * 2 1 3 32 32 H 1.09006 * 109.46845 * 184.27965 * 3 2 1 33 33 H 1.08996 * 109.47309 * 55.48343 * 4 3 2 34 34 H 1.08994 * 109.46948 * 175.48625 * 4 3 2 35 35 H 1.09001 * 109.47157 * 305.21623 * 5 4 3 36 36 H 1.08992 * 109.47490 * 65.21958 * 5 4 3 37 37 H 1.09009 * 109.46901 * 185.21923 * 5 4 3 38 38 H 1.08995 * 109.47458 * 305.00302 * 6 3 2 39 39 H 1.09000 * 109.47062 * 184.99921 * 6 3 2 40 40 H 0.97000 * 119.99998 * 0.02562 * 7 6 3 41 41 H 1.08001 * 120.00140 * 352.72164 * 10 8 7 42 42 H 1.07999 * 119.99657 * 168.84644 * 11 10 8 43 43 H 1.08000 * 120.05025 * 0.02765 * 13 12 11 44 44 H 1.07994 * 119.95071 * 180.23100 * 14 13 12 45 45 H 0.97002 * 119.99647 * 180.02562 * 20 19 17 46 46 H 1.07996 * 119.94768 * 179.97438 * 25 15 14 47 47 H 1.07994 * 120.05481 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4439 2.1942 -1.1919 5 6 1.9548 1.5732 -2.4936 6 6 1.6197 2.1321 1.2996 7 7 2.2859 1.4854 2.4330 8 6 2.0650 1.9283 3.6865 9 8 1.3117 2.8653 3.8771 10 6 2.7346 1.2868 4.8174 11 6 2.6309 1.8191 6.0539 12 6 2.0597 3.1615 6.2305 13 6 2.4299 4.2011 5.3685 14 6 1.8887 5.4553 5.5346 15 6 0.9831 5.6940 6.5641 16 8 0.4562 6.9324 6.7269 17 6 -0.3198 7.1296 7.8112 18 1 -0.4287 6.3465 8.5469 19 6 -0.9785 8.3383 7.9821 20 7 -0.8456 9.2921 7.0865 21 14 -2.0545 8.6113 9.4846 22 1 -1.2326 8.4736 10.7137 23 1 -2.6413 9.9744 9.4322 24 1 -3.1446 7.6031 9.5025 25 6 0.6163 4.6651 7.4265 26 6 1.1484 3.4065 7.2650 27 1 -0.3633 0.4446 0.9265 28 1 -0.3633 0.5800 -0.8483 29 1 -0.3632 -1.0247 -0.0782 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.1273 1.4435 -0.0767 33 1 0.3567 2.1247 -1.1584 34 1 1.7426 3.2414 -1.1472 35 1 3.0446 1.5587 -2.4860 36 1 1.5784 0.5541 -2.5822 37 1 1.6051 2.1645 -3.3400 38 1 0.5393 2.0530 1.4199 39 1 1.9052 3.1833 1.2619 40 1 2.8865 0.7390 2.2810 41 1 3.3121 0.3872 4.6635 42 1 2.9677 1.2582 6.9132 43 1 3.1357 4.0177 4.5719 44 1 2.1708 6.2568 4.8680 45 1 -1.3060 10.1375 7.2063 46 1 -0.0865 4.8551 8.2242 47 1 0.8629 2.6086 7.9344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255496381.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:04 Heat of formation + Delta-G solvation = -31.035467 kcal Electronic energy + Delta-G solvation = -25881.716049 eV Core-core repulsion = 22223.450530 eV Total energy + Delta-G solvation = -3658.265519 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.82766 -38.80262 -37.90870 -36.36211 -33.87898 -33.00309 -32.09787 -31.38099 -30.08177 -29.00660 -27.68142 -25.45009 -24.73166 -23.84427 -22.41231 -21.71676 -20.81270 -19.69586 -18.90470 -17.90143 -17.15363 -16.60104 -16.21254 -15.73817 -15.38346 -14.65118 -14.57577 -14.45415 -14.12894 -13.95092 -13.55915 -13.44603 -13.28431 -13.16324 -12.95050 -12.80532 -12.61087 -12.27655 -12.23649 -12.12889 -11.78449 -11.66333 -11.39006 -11.33963 -10.98038 -10.82349 -10.70610 -10.66455 -10.63209 -10.60227 -10.37776 -9.47216 -9.37769 -9.12681 -8.87040 -8.67039 -7.88256 -6.82781 -6.43509 -3.99183 1.28985 2.45924 2.74272 3.15091 3.17731 3.18954 3.40629 3.70098 3.99158 4.47092 4.52949 4.56801 4.72897 4.96327 5.01661 5.10142 5.13273 5.16388 5.25286 5.30163 5.36733 5.38465 5.44615 5.50659 5.62196 5.64572 5.69246 5.76844 5.81276 5.85726 5.88680 5.89092 5.98849 6.03669 6.22934 6.29122 6.37257 6.47565 6.60893 6.64064 6.82631 7.07198 7.14961 7.39423 7.48585 7.53534 7.73851 7.95901 8.03125 8.61304 9.02086 9.74718 10.74420 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016736 B = 0.002586 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.654684 B =10825.205921 C =11785.694431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 C -0.099 4.099 4 C -0.123 4.123 5 C -0.151 4.151 6 C 0.123 3.877 7 N -0.735 5.735 8 C 0.537 3.463 9 O -0.512 6.512 10 C -0.267 4.267 11 C 0.026 3.974 12 C -0.189 4.189 13 C 0.013 3.987 14 C -0.203 4.203 15 C 0.171 3.829 16 O -0.173 6.173 17 C -0.390 4.390 18 H 0.093 0.907 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.250 4.250 26 C -0.042 4.042 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.393 0.607 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.126 0.874 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.196 -19.173 -12.591 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.156 4.156 3 C -0.118 4.118 4 C -0.160 4.160 5 C -0.208 4.208 6 C -0.001 4.001 7 N -0.389 5.389 8 C 0.327 3.673 9 O -0.388 6.388 10 C -0.288 4.288 11 C 0.007 3.993 12 C -0.190 4.190 13 C -0.006 4.006 14 C -0.222 4.222 15 C 0.116 3.884 16 O -0.075 6.075 17 C -0.466 4.466 18 H 0.110 0.890 19 C -0.166 4.166 20 N -0.495 5.495 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.203 1.203 24 H -0.195 1.195 25 C -0.270 4.270 26 C -0.061 4.061 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.227 0.773 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.081 0.919 46 H 0.143 0.857 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.548 -17.994 -12.632 22.940 hybrid contribution -0.299 -0.428 0.578 0.779 sum 6.250 -18.422 -12.053 22.885 Atomic orbital electron populations 1.21913 0.95759 1.01513 1.02460 1.21551 0.96506 0.95856 1.01722 1.21447 1.00587 0.95476 0.94296 1.21581 1.01273 0.99558 0.93638 1.21783 1.01056 1.00895 0.97087 1.21366 0.97881 0.96701 0.84156 1.45992 1.49346 1.37218 1.06301 1.18489 0.82571 0.83412 0.82875 1.90999 1.36571 1.27015 1.84238 1.22606 1.08596 1.03825 0.93785 1.22324 0.88845 0.92551 0.95626 1.18288 1.06592 0.92681 1.01422 1.20432 0.95635 0.91132 0.93361 1.19994 1.03078 0.97702 1.01466 1.19538 0.90962 0.85334 0.92552 1.83922 1.56333 1.24224 1.43021 1.21338 1.25939 1.01303 0.98021 0.88988 1.25324 0.97472 0.94712 0.99063 1.70018 1.40579 1.04823 1.34054 0.85773 0.79583 0.78039 0.79998 1.19448 1.20267 1.19466 1.20948 1.07767 0.93387 1.04861 1.20741 0.94804 0.95538 0.94976 0.92249 0.92135 0.93031 0.91812 0.92055 0.90707 0.91060 0.91622 0.92811 0.92592 0.92774 0.91359 0.91699 0.77286 0.86274 0.86151 0.88128 0.86882 0.91917 0.85677 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 9.23 37.16 0.34 -0.89 16 2 C -0.12 -0.82 5.27 -26.73 -0.14 -0.96 16 3 C -0.10 -0.76 2.21 -90.62 -0.20 -0.96 16 4 C -0.12 -0.91 5.09 -26.73 -0.14 -1.05 16 5 C -0.15 -0.95 9.52 37.16 0.35 -0.59 16 6 C 0.12 1.34 4.92 -4.04 -0.02 1.32 16 7 N -0.74 -8.14 5.24 -61.75 -0.32 -8.46 16 8 C 0.54 8.04 6.77 -13.04 -0.09 7.95 16 9 O -0.51 -10.18 12.18 5.17 0.06 -10.12 16 10 C -0.27 -3.42 9.91 -37.51 -0.37 -3.79 16 11 C 0.03 0.37 9.80 -37.19 -0.36 0.01 16 12 C -0.19 -3.56 4.54 -105.03 -0.48 -4.04 16 13 C 0.01 0.26 6.60 -39.14 -0.26 0.01 16 14 C -0.20 -4.75 9.97 -39.46 -0.39 -5.15 16 15 C 0.17 4.42 6.66 -38.88 -0.26 4.16 16 16 O -0.17 -5.14 9.74 0.75 0.01 -5.13 16 17 C -0.39 -11.22 9.44 30.91 0.29 -10.93 16 18 H 0.09 2.45 5.27 -52.48 -0.28 2.17 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 21 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.25 -5.82 9.11 -39.47 -0.36 -6.18 16 26 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 27 H 0.06 0.56 6.65 -51.93 -0.35 0.21 16 28 H 0.06 0.44 6.01 -51.93 -0.31 0.13 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 6.89 -51.93 -0.36 0.03 16 31 H 0.06 0.42 7.09 -51.93 -0.37 0.05 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 6.00 -51.93 -0.31 0.24 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.33 6.91 -51.93 -0.36 -0.03 16 37 H 0.05 0.33 8.14 -51.92 -0.42 -0.10 16 38 H 0.07 0.85 6.41 -51.93 -0.33 0.52 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.39 3.16 7.63 -40.82 -0.31 2.85 16 41 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.10 1.88 7.02 -52.49 -0.37 1.51 16 44 H 0.11 2.58 8.06 -52.49 -0.42 2.16 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 46 H 0.13 2.87 5.69 -52.49 -0.30 2.57 16 47 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -33.69 376.97 -8.40 -42.09 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.01 Total: 6.37 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.56 Total: -21.31 kcal Atomic # 7 Polarization: -33.89 SS G_CDS: 0.44 Total: -33.45 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.07 Total: -15.26 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.69 -8.40 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255496381.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.057 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds