Wall clock time and date at job start Tue Mar 31 2020 13:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46899 * 2 1 4 4 C 1.52996 * 109.47217 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47447 * 300.00399 * 3 2 1 6 6 C 1.53002 * 109.46785 * 299.99768 * 5 3 2 7 7 N 1.46504 * 109.47103 * 60.00411 * 3 2 1 8 8 C 1.34776 * 119.99958 * 59.99667 * 7 3 2 9 9 O 1.21723 * 120.00049 * 0.02562 * 8 7 3 10 10 C 1.46253 * 119.99812 * 180.02562 * 8 7 3 11 11 C 1.35019 * 119.99944 * 173.21898 * 10 8 7 12 12 C 1.46958 * 120.00005 * 348.68497 * 11 10 8 13 13 C 1.40023 * 120.10096 * 316.39041 * 12 11 10 14 14 C 1.37596 * 119.89747 * 179.69648 * 13 12 11 15 15 C 1.39174 * 120.10037 * 0.60437 * 14 13 12 16 16 O 1.35571 * 119.89954 * 179.69565 * 15 14 13 17 17 C 1.34784 * 117.00236 * 174.33468 * 16 15 14 18 18 H 1.07996 * 119.99795 * 5.06240 * 17 16 15 19 19 C 1.38715 * 120.00167 * 185.06372 * 17 16 15 20 20 N 1.31511 * 120.00263 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00105 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47205 * 60.00008 * 21 19 17 23 23 H 1.48503 * 109.47117 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47128 * 299.99932 * 21 19 17 25 25 C 1.39177 * 120.20442 * 359.67205 * 15 14 13 26 26 C 1.37593 * 120.09915 * 0.02562 * 25 15 14 27 27 H 1.08997 * 109.46842 * 299.99806 * 1 2 3 28 28 H 1.08997 * 109.47166 * 59.99652 * 1 2 3 29 29 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46842 * 240.00194 * 2 1 3 31 31 H 1.09000 * 109.47181 * 119.99825 * 2 1 3 32 32 H 1.09003 * 109.47335 * 299.99887 * 4 3 2 33 33 H 1.09002 * 109.47333 * 59.99961 * 4 3 2 34 34 H 1.08998 * 109.47534 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47529 * 59.99595 * 5 3 2 36 36 H 1.09005 * 109.47436 * 180.02562 * 5 3 2 37 37 H 1.08995 * 109.47562 * 299.99748 * 6 5 3 38 38 H 1.08998 * 109.46998 * 60.00345 * 6 5 3 39 39 H 1.09003 * 109.47075 * 179.97438 * 6 5 3 40 40 H 0.97002 * 119.99708 * 239.99757 * 7 3 2 41 41 H 1.08003 * 120.00194 * 353.21654 * 10 8 7 42 42 H 1.08002 * 120.00085 * 168.68590 * 11 10 8 43 43 H 1.08003 * 120.05142 * 0.02562 * 13 12 11 44 44 H 1.07999 * 119.95181 * 180.27936 * 14 13 12 45 45 H 0.96995 * 120.00314 * 179.97438 * 20 19 17 46 46 H 1.08004 * 119.95085 * 179.97438 * 25 15 14 47 47 H 1.08001 * 120.05283 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 1.5299 2.1638 -1.2491 6 6 2.0400 1.4426 -2.4984 7 7 1.5517 2.1331 1.1963 8 6 1.8774 1.6726 2.4203 9 8 2.5775 0.6832 2.5319 10 6 1.3894 2.3617 3.6145 11 6 1.5991 1.8260 4.8360 12 6 2.0895 0.4462 4.9590 13 6 1.5480 -0.5657 4.1567 14 6 2.0147 -1.8550 4.2709 15 6 3.0145 -2.1566 5.1908 16 8 3.4670 -3.4295 5.3042 17 6 4.5146 -3.6356 6.1268 18 1 4.9025 -2.8218 6.7215 19 6 5.0947 -4.8929 6.2096 20 7 4.6221 -5.8841 5.4858 21 14 6.5462 -5.1787 7.3501 22 1 6.1448 -4.8762 8.7475 23 1 6.9784 -6.5963 7.2557 24 1 7.6689 -4.2910 6.9544 25 6 3.5517 -1.1552 5.9944 26 6 3.0956 0.1381 5.8829 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9337 0.9287 0.8891 33 1 3.9330 0.9289 -0.8909 34 1 3.9333 2.4702 -0.0002 35 1 0.4400 2.1638 -1.2492 36 1 1.8936 3.1914 -1.2494 37 1 3.1299 1.4427 -2.4985 38 1 1.6766 0.4150 -2.4985 39 1 1.6762 1.9562 -3.3884 40 1 0.9940 2.9218 1.1073 41 1 0.8614 3.2990 3.5193 42 1 1.4063 2.4116 5.7228 43 1 0.7690 -0.3335 3.4456 44 1 1.6008 -2.6353 3.6493 45 1 5.0280 -6.7631 5.5434 46 1 4.3272 -1.3939 6.7073 47 1 3.5133 0.9146 6.5065 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255602546.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:08 Heat of formation + Delta-G solvation = -41.092675 kcal Electronic energy + Delta-G solvation = -27034.958642 eV Core-core repulsion = 23376.257010 eV Total energy + Delta-G solvation = -3658.701632 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.40158 -40.59702 -38.84537 -37.68590 -34.56874 -34.03839 -33.62430 -32.13002 -31.79890 -30.21167 -29.33871 -27.42610 -25.88826 -24.29668 -24.19677 -23.45148 -22.38330 -20.37134 -19.98251 -19.69963 -18.84578 -18.02930 -16.95684 -16.44289 -16.32366 -16.13404 -15.98036 -15.93022 -15.52369 -15.09360 -14.83715 -14.57989 -14.48145 -14.30249 -14.06063 -13.78359 -13.72146 -13.56856 -13.33530 -13.03891 -12.91406 -12.78122 -12.68681 -12.48549 -12.34048 -12.21963 -12.13195 -12.08307 -11.99297 -11.40569 -11.34723 -11.22221 -10.89995 -10.34452 -10.32310 -9.90289 -9.50415 -8.52099 -8.47640 -6.15630 0.04313 0.73560 1.16534 1.32603 1.46558 1.49838 2.17055 2.44504 2.59039 2.87751 3.22250 3.53993 3.74862 3.95569 4.03715 4.06158 4.10829 4.17922 4.20789 4.34800 4.50241 4.52691 4.56488 4.61461 4.68582 4.73127 4.78147 4.81616 4.93542 4.96124 5.06729 5.08712 5.10815 5.19860 5.23975 5.27245 5.29898 5.30669 5.32098 5.46639 5.48548 5.61380 5.69996 5.74144 5.81710 5.88620 6.02829 6.27067 6.88744 6.95518 7.61360 7.78307 8.74821 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016564 B = 0.003255 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.962107 B = 8599.615631 C = 9437.766546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.140 4.140 3 C 0.182 3.818 4 C -0.162 4.162 5 C -0.117 4.117 6 C -0.155 4.155 7 N -0.709 5.709 8 C 0.526 3.474 9 O -0.554 6.554 10 C -0.230 4.230 11 C -0.001 4.001 12 C -0.156 4.156 13 C 0.021 3.979 14 C -0.220 4.220 15 C 0.127 3.873 16 O -0.232 6.232 17 C -0.416 4.416 18 H 0.102 0.898 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.021 2.979 22 H -0.254 1.254 23 H -0.270 1.270 24 H -0.259 1.259 25 C -0.260 4.260 26 C -0.049 4.049 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.412 0.588 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.273 0.727 46 H 0.118 0.882 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.648 22.990 -10.762 26.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.178 4.178 3 C 0.096 3.904 4 C -0.220 4.220 5 C -0.154 4.154 6 C -0.212 4.212 7 N -0.361 5.361 8 C 0.317 3.683 9 O -0.434 6.434 10 C -0.251 4.251 11 C -0.020 4.020 12 C -0.157 4.157 13 C 0.002 3.998 14 C -0.240 4.240 15 C 0.077 3.923 16 O -0.138 6.138 17 C -0.492 4.492 18 H 0.119 0.881 19 C -0.221 4.221 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.183 1.183 25 C -0.279 4.279 26 C -0.067 4.067 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.249 0.751 41 H 0.188 0.812 42 H 0.182 0.818 43 H 0.136 0.864 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.136 0.864 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.198 21.867 -10.858 25.754 hybrid contribution 0.633 -0.703 0.321 0.999 sum -7.565 21.163 -10.537 24.822 Atomic orbital electron populations 1.21705 0.94632 1.01212 1.02264 1.21944 0.97117 0.96846 1.01914 1.20247 0.92986 0.91833 0.85289 1.22210 0.95903 1.01835 1.02035 1.21745 1.01941 0.99586 0.92151 1.21867 1.01426 1.00754 0.97173 1.45951 1.53488 1.32146 1.04549 1.18972 0.80617 0.83871 0.84883 1.90961 1.38957 1.26841 1.86640 1.23133 1.06979 1.03685 0.91259 1.22522 0.90050 0.90969 0.98504 1.18844 1.01745 0.94414 1.00700 1.20606 0.96143 0.90030 0.92985 1.20148 1.02635 0.98232 1.02958 1.19991 0.93465 0.84884 0.93985 1.83873 1.45785 1.23432 1.60757 1.21840 1.08386 0.98022 1.20974 0.88115 1.26664 1.01971 0.93718 0.99751 1.70170 1.42588 1.02254 1.40925 0.84630 0.75745 0.78187 0.77507 1.17829 1.19390 1.18302 1.21069 1.06900 0.94362 1.05552 1.21161 0.94779 0.94593 0.96174 0.93134 0.90512 0.93975 0.91277 0.93639 0.94146 0.91353 0.92066 0.89744 0.90147 0.92686 0.92748 0.90962 0.75119 0.81213 0.81796 0.86413 0.88437 0.91773 0.86410 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.40 71.98 0.68 -2.16 16 2 C -0.14 -3.43 4.43 30.60 0.14 -3.30 16 3 C 0.18 3.56 0.53 3.60 0.00 3.56 16 4 C -0.16 -3.87 8.05 71.98 0.58 -3.29 16 5 C -0.12 -1.42 4.75 30.59 0.15 -1.27 16 6 C -0.15 -1.93 9.21 71.98 0.66 -1.27 16 7 N -0.71 -12.75 4.34 -427.25 -1.85 -14.60 16 8 C 0.53 13.38 6.19 86.33 0.53 13.91 16 9 O -0.55 -20.12 8.38 -4.42 -0.04 -20.16 16 10 C -0.23 -4.45 9.90 23.61 0.23 -4.22 16 11 C 0.00 -0.03 9.80 23.82 0.23 0.21 16 12 C -0.16 -5.44 4.54 -20.13 -0.09 -5.53 16 13 C 0.02 0.82 6.60 22.55 0.15 0.97 16 14 C -0.22 -10.87 9.97 22.34 0.22 -10.64 16 15 C 0.13 7.03 6.66 22.72 0.15 7.18 16 16 O -0.23 -15.06 9.74 -20.30 -0.20 -15.26 16 17 C -0.42 -25.73 9.48 67.93 0.64 -25.08 16 18 H 0.10 5.72 5.18 -2.91 -0.02 5.71 16 19 C -0.02 -1.41 5.49 84.85 0.47 -0.95 16 20 N -0.92 -59.05 13.67 21.62 0.30 -58.75 16 21 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 22 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 C -0.26 -12.41 9.14 22.34 0.20 -12.21 16 26 C -0.05 -1.86 9.78 22.55 0.22 -1.64 16 27 H 0.05 1.03 7.60 -2.39 -0.02 1.01 16 28 H 0.08 1.13 6.43 -2.39 -0.02 1.12 16 29 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.62 6.43 -2.39 -0.02 1.61 16 31 H 0.04 1.56 6.16 -2.39 -0.01 1.55 16 32 H 0.04 1.33 6.16 -2.39 -0.01 1.31 16 33 H 0.07 1.50 6.43 -2.39 -0.02 1.48 16 34 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 0.82 6.43 -2.39 -0.02 0.81 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.05 0.75 6.43 -2.39 -0.02 0.74 16 38 H 0.05 0.77 6.43 -2.39 -0.02 0.75 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.41 4.31 8.45 -92.71 -0.78 3.52 16 41 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 42 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 43 H 0.12 4.21 7.02 -2.91 -0.02 4.19 16 44 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 45 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 46 H 0.12 5.65 5.62 -2.91 -0.02 5.63 16 47 H 0.15 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -82.14 368.81 5.61 -76.53 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.20 Total: 31.22 kcal Atomic # 6 Polarization: -50.89 SS G_CDS: 5.17 Total: -45.72 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -1.56 Total: -73.35 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.23 Total: -35.42 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -82.14 5.61 -76.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255602546.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.433 kcal (2) G-P(sol) polarization free energy of solvation -82.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds