Wall clock time and date at job start Tue Mar 31 2020 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 C 1.52998 * 109.47339 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47042 * 180.02562 * 4 3 2 6 6 C 1.38402 * 119.82715 * 90.00100 * 5 4 3 7 7 C 1.37884 * 120.17408 * 179.97438 * 6 5 4 8 8 C 1.39854 * 119.82135 * 0.02562 * 7 6 5 9 9 C 1.47173 * 120.16860 * 179.97438 * 8 7 6 10 10 O 1.21257 * 120.00199 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00013 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47199 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47199 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99705 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00164 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99655 * 0.02562 * 15 13 12 17 17 C 1.37089 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.08003 * 120.00186 * 22.40884 * 17 15 13 19 19 C 1.38948 * 119.99934 * 202.40219 * 17 15 13 20 20 N 1.31414 * 120.00125 * 11.61374 * 19 17 15 21 21 Si 1.86806 * 119.99921 * 191.60775 * 19 17 15 22 22 H 1.48497 * 109.46971 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46767 * 120.00437 * 21 19 17 24 24 H 1.48503 * 109.47165 * 240.00265 * 21 19 17 25 25 C 1.39853 * 119.65975 * 0.24996 * 8 7 6 26 26 C 1.37887 * 119.82218 * 359.51448 * 25 8 7 27 27 H 1.09001 * 109.47126 * 300.00206 * 1 2 3 28 28 H 1.08996 * 109.47085 * 59.99764 * 1 2 3 29 29 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47126 * 239.99794 * 2 1 3 31 31 H 1.08999 * 109.47462 * 119.99877 * 2 1 3 32 32 H 1.09001 * 109.47180 * 59.99827 * 3 2 1 33 33 H 1.09005 * 109.47289 * 299.99913 * 3 2 1 34 34 H 1.09007 * 109.47075 * 60.00242 * 4 3 2 35 35 H 1.08999 * 109.47462 * 299.99877 * 4 3 2 36 36 H 1.07996 * 119.91280 * 359.97438 * 6 5 4 37 37 H 1.07999 * 120.08938 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46985 * 300.00088 * 11 9 8 39 39 H 1.09002 * 109.47066 * 59.99688 * 11 9 8 40 40 H 1.08998 * 109.46966 * 299.99833 * 12 11 9 41 41 H 1.08994 * 109.46842 * 59.99942 * 12 11 9 42 42 H 1.09007 * 109.47290 * 92.15775 * 16 15 13 43 43 H 1.09002 * 109.47222 * 212.15153 * 16 15 13 44 44 H 1.09001 * 109.47916 * 332.15175 * 16 15 13 45 45 H 0.96996 * 120.00046 * 179.97438 * 20 19 17 46 46 H 1.08006 * 120.08569 * 179.72567 * 25 8 7 47 47 H 1.07993 * 119.90969 * 180.20900 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.3023 3.5116 1.2010 7 6 4.7624 4.8114 1.2099 8 6 4.9961 5.4748 0.0011 9 6 5.4867 6.8623 0.0017 10 8 5.6888 7.4335 1.0520 11 6 5.7378 7.5733 -1.3031 12 6 6.2386 8.9916 -1.0229 13 6 6.4904 9.7024 -2.3277 14 8 6.2886 9.1309 -3.3784 15 7 6.9397 10.9731 -2.3272 16 6 7.1839 11.6630 -1.0582 17 6 7.1692 11.6195 -3.5141 18 1 6.6741 11.2871 -4.4146 19 6 8.0386 12.7024 -3.5587 20 7 8.8115 12.9673 -2.5294 21 14 8.1089 13.7817 -5.0818 22 1 7.1460 13.2751 -6.0923 23 1 7.7544 15.1768 -4.7166 24 1 9.4819 13.7516 -5.6469 25 6 4.7558 4.8147 -1.2083 26 6 4.3004 3.5133 -1.2005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 4.1209 2.9981 2.1335 37 1 4.9410 5.3161 2.1478 38 1 6.4891 7.0287 -1.8749 39 1 4.8110 7.6219 -1.8747 40 1 5.4870 9.5360 -0.4513 41 1 7.1653 8.9434 -0.4512 42 1 8.2239 11.5234 -0.7629 43 1 6.9801 12.7271 -1.1780 44 1 6.5296 11.2522 -0.2893 45 1 9.4187 13.7231 -2.5607 46 1 4.9298 5.3220 -2.1458 47 1 4.1176 3.0011 -2.1335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263809753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:08 Heat of formation + Delta-G solvation = -70.414184 kcal Electronic energy + Delta-G solvation = -25038.327309 eV Core-core repulsion = 21378.354201 eV Total energy + Delta-G solvation = -3659.973108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.18907 -38.81363 -38.13067 -36.04325 -34.71387 -32.90779 -32.27479 -31.49760 -31.01837 -29.19725 -26.67162 -25.77200 -24.71311 -23.58097 -22.69771 -21.88335 -21.31991 -19.62853 -18.58742 -17.16839 -16.77064 -16.24175 -15.90748 -15.48477 -15.48187 -15.19165 -14.64435 -14.47110 -14.28942 -14.04445 -13.89989 -13.74786 -13.65543 -13.18176 -13.06846 -12.85067 -12.53793 -12.27149 -11.96622 -11.72294 -11.60348 -11.53409 -11.43651 -11.31052 -11.17149 -11.09827 -11.07612 -10.91310 -10.80534 -10.66246 -10.30409 -10.17075 -9.55142 -9.16036 -8.99936 -8.89334 -8.35605 -7.64232 -6.27283 -3.84118 0.56948 1.21810 2.42142 3.17011 3.27015 3.33954 3.64776 3.93738 4.00204 4.20449 4.31805 4.46031 4.63783 4.65988 4.79550 4.83790 4.91055 5.00187 5.15217 5.16758 5.23300 5.25793 5.27656 5.29308 5.41262 5.49320 5.56347 5.56934 5.61698 5.73849 5.76162 5.82175 5.86753 5.93374 5.95154 6.11842 6.16200 6.29841 6.34207 6.36037 6.45015 6.50996 6.72257 6.95102 7.29580 7.59964 7.63831 8.17129 8.52339 9.22355 9.47636 10.02847 10.76264 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.001951 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.538907 B =14349.094613 C =14968.056427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.085 4.085 5 C -0.056 4.056 6 C -0.134 4.134 7 C -0.061 4.061 8 C -0.169 4.169 9 C 0.395 3.605 10 O -0.455 6.455 11 C -0.144 4.144 12 C -0.120 4.120 13 C 0.445 3.555 14 O -0.596 6.596 15 N -0.447 5.447 16 C 0.112 3.888 17 C -0.305 4.305 18 H 0.099 0.901 19 C 0.028 3.972 20 N -0.883 5.883 21 Si 0.926 3.074 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.282 1.282 25 C -0.066 4.066 26 C -0.132 4.132 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.058 0.942 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.266 0.734 46 H 0.138 0.862 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.588 -22.199 8.126 26.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.122 4.122 5 C -0.056 4.056 6 C -0.152 4.152 7 C -0.079 4.079 8 C -0.170 4.170 9 C 0.273 3.727 10 O -0.331 6.331 11 C -0.181 4.181 12 C -0.160 4.160 13 C 0.233 3.767 14 O -0.482 6.482 15 N -0.165 5.165 16 C -0.032 4.032 17 C -0.433 4.433 18 H 0.117 0.883 19 C -0.174 4.174 20 N -0.523 5.523 21 Si 0.753 3.247 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.084 4.084 26 C -0.150 4.150 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.076 0.924 46 H 0.156 0.844 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.430 -21.984 8.216 26.104 hybrid contribution 0.260 0.701 -0.593 0.955 sum -11.170 -21.282 7.623 25.215 Atomic orbital electron populations 1.21778 0.95809 1.01585 1.01960 1.21546 0.95970 0.96691 1.02046 1.21615 0.94035 0.96911 1.02709 1.20702 0.95877 0.92447 1.03174 1.20148 0.96213 0.96026 0.93237 1.20982 1.01598 0.94908 0.97698 1.21424 0.94526 0.94036 0.97931 1.20630 1.05489 0.96627 0.94263 1.22745 0.72653 0.86116 0.91198 1.90496 1.40180 1.67307 1.35106 1.21717 1.04469 0.96501 0.95448 1.21318 1.02640 0.94438 0.97629 1.20035 0.84507 0.82134 0.90005 1.90490 1.58115 1.66081 1.33516 1.43604 1.56353 1.09879 1.06671 1.21519 0.99722 0.97930 0.84058 1.19711 1.24380 1.10984 0.88260 0.88335 1.25354 0.94755 0.98770 0.98553 1.70018 1.22622 1.29038 1.30627 0.85865 0.78173 0.79364 0.81298 1.19258 1.20709 1.20774 1.21603 0.94672 0.94312 0.97840 1.21030 1.01257 0.94954 0.97745 0.92731 0.92659 0.92800 0.91952 0.92021 0.91719 0.91612 0.90705 0.90827 0.85717 0.84984 0.87757 0.87839 0.90079 0.89873 0.92390 0.91376 0.95267 0.92356 0.84416 0.85487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.12 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.12 -0.70 5.20 -26.73 -0.14 -0.84 16 4 C -0.08 -0.54 5.34 -27.88 -0.15 -0.69 16 5 C -0.06 -0.49 5.14 -104.50 -0.54 -1.03 16 6 C -0.13 -1.26 9.68 -39.65 -0.38 -1.64 16 7 C -0.06 -0.70 9.60 -39.11 -0.38 -1.08 16 8 C -0.17 -2.15 5.87 -105.06 -0.62 -2.76 16 9 C 0.39 5.91 7.12 -30.68 -0.22 5.70 16 10 O -0.46 -7.89 15.98 5.58 0.09 -7.80 16 11 C -0.14 -2.31 3.60 -27.88 -0.10 -2.41 16 12 C -0.12 -2.30 3.51 -27.88 -0.10 -2.40 16 13 C 0.44 10.94 7.63 -10.98 -0.08 10.86 16 14 O -0.60 -16.21 15.67 5.55 0.09 -16.13 16 15 N -0.45 -11.76 3.02 -122.20 -0.37 -12.13 16 16 C 0.11 2.60 8.52 59.84 0.51 3.11 16 17 C -0.31 -8.67 9.29 -14.94 -0.14 -8.81 16 18 H 0.10 2.91 7.41 -52.48 -0.39 2.52 16 19 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16 20 N -0.88 -24.05 10.61 55.50 0.59 -23.46 16 21 Si 0.93 21.05 29.57 -169.99 -5.03 16.02 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.07 -0.73 9.47 -39.11 -0.37 -1.10 16 26 C -0.13 -1.23 9.68 -39.65 -0.38 -1.62 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 35 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.49 7.65 -52.49 -0.40 1.09 16 38 H 0.10 1.65 8.05 -51.93 -0.42 1.23 16 39 H 0.10 1.60 8.04 -51.93 -0.42 1.18 16 40 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 41 H 0.08 1.58 8.06 -51.93 -0.42 1.16 16 42 H 0.06 1.40 7.54 -51.93 -0.39 1.01 16 43 H 0.07 1.65 7.06 -51.93 -0.37 1.29 16 44 H 0.03 0.57 6.36 -51.93 -0.33 0.24 16 45 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 46 H 0.14 1.41 7.05 -52.48 -0.37 1.04 16 47 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 388.93 15.07 5.86 5.86 Total: -1.00 -32.30 388.93 -9.40 -41.70 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.66 Total: 1.21 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.96 Total: -5.28 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.22 Total: -35.58 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: 0.18 Total: -23.93 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.30 -9.40 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263809753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.718 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds