Wall clock time and date at job start Tue Mar 31 2020 13:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 C 1.52998 * 109.47339 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47042 * 180.02562 * 4 3 2 6 6 C 1.38402 * 119.82715 * 90.00100 * 5 4 3 7 7 C 1.37884 * 120.17408 * 179.97438 * 6 5 4 8 8 C 1.39854 * 119.82135 * 0.02562 * 7 6 5 9 9 C 1.47173 * 120.16860 * 179.97438 * 8 7 6 10 10 O 1.21257 * 120.00199 * 359.97438 * 9 8 7 11 11 C 1.50701 * 120.00013 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47199 * 179.97438 * 11 9 8 13 13 C 1.50701 * 109.47199 * 179.97438 * 12 11 9 14 14 O 1.21294 * 119.99705 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00164 * 180.02562 * 13 12 11 16 16 C 1.46493 * 119.99655 * 0.02562 * 15 13 12 17 17 C 1.37089 * 120.00023 * 179.97438 * 15 13 12 18 18 H 1.08003 * 120.00186 * 22.40884 * 17 15 13 19 19 C 1.38948 * 119.99934 * 202.40219 * 17 15 13 20 20 N 1.31414 * 120.00125 * 11.61374 * 19 17 15 21 21 Si 1.86806 * 119.99921 * 191.60775 * 19 17 15 22 22 H 1.48497 * 109.46971 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46767 * 120.00437 * 21 19 17 24 24 H 1.48503 * 109.47165 * 240.00265 * 21 19 17 25 25 C 1.39853 * 119.65975 * 0.24996 * 8 7 6 26 26 C 1.37887 * 119.82218 * 359.51448 * 25 8 7 27 27 H 1.09001 * 109.47126 * 300.00206 * 1 2 3 28 28 H 1.08996 * 109.47085 * 59.99764 * 1 2 3 29 29 H 1.08996 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47126 * 239.99794 * 2 1 3 31 31 H 1.08999 * 109.47462 * 119.99877 * 2 1 3 32 32 H 1.09001 * 109.47180 * 59.99827 * 3 2 1 33 33 H 1.09005 * 109.47289 * 299.99913 * 3 2 1 34 34 H 1.09007 * 109.47075 * 60.00242 * 4 3 2 35 35 H 1.08999 * 109.47462 * 299.99877 * 4 3 2 36 36 H 1.07996 * 119.91280 * 359.97438 * 6 5 4 37 37 H 1.07999 * 120.08938 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.46985 * 300.00088 * 11 9 8 39 39 H 1.09002 * 109.47066 * 59.99688 * 11 9 8 40 40 H 1.08998 * 109.46966 * 299.99833 * 12 11 9 41 41 H 1.08994 * 109.46842 * 59.99942 * 12 11 9 42 42 H 1.09007 * 109.47290 * 92.15775 * 16 15 13 43 43 H 1.09002 * 109.47222 * 212.15153 * 16 15 13 44 44 H 1.09001 * 109.47916 * 332.15175 * 16 15 13 45 45 H 0.96996 * 120.00046 * 179.97438 * 20 19 17 46 46 H 1.08006 * 120.08569 * 179.72567 * 25 8 7 47 47 H 1.07993 * 119.90969 * 180.20900 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 0.0000 6 6 4.3023 3.5116 1.2010 7 6 4.7624 4.8114 1.2099 8 6 4.9961 5.4748 0.0011 9 6 5.4867 6.8623 0.0017 10 8 5.6888 7.4335 1.0520 11 6 5.7378 7.5733 -1.3031 12 6 6.2386 8.9916 -1.0229 13 6 6.4904 9.7024 -2.3277 14 8 6.2886 9.1309 -3.3784 15 7 6.9397 10.9731 -2.3272 16 6 7.1839 11.6630 -1.0582 17 6 7.1692 11.6195 -3.5141 18 1 6.6741 11.2871 -4.4146 19 6 8.0386 12.7024 -3.5587 20 7 8.8115 12.9673 -2.5294 21 14 8.1089 13.7817 -5.0818 22 1 7.1460 13.2751 -6.0923 23 1 7.7544 15.1768 -4.7166 24 1 9.4819 13.7516 -5.6469 25 6 4.7558 4.8147 -1.2083 26 6 4.3004 3.5133 -1.2005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9288 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 4.1209 2.9981 2.1335 37 1 4.9410 5.3161 2.1478 38 1 6.4891 7.0287 -1.8749 39 1 4.8110 7.6219 -1.8747 40 1 5.4870 9.5360 -0.4513 41 1 7.1653 8.9434 -0.4512 42 1 8.2239 11.5234 -0.7629 43 1 6.9801 12.7271 -1.1780 44 1 6.5296 11.2522 -0.2893 45 1 9.4187 13.7231 -2.5607 46 1 4.9298 5.3220 -2.1458 47 1 4.1176 3.0011 -2.1335 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263809753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:07 Heat of formation + Delta-G solvation = -86.115868 kcal Electronic energy + Delta-G solvation = -25039.008185 eV Core-core repulsion = 21378.354201 eV Total energy + Delta-G solvation = -3660.653984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.25357 -40.32901 -39.47690 -36.73056 -36.58190 -34.13195 -33.59979 -33.10279 -31.90961 -29.94952 -28.44238 -27.29981 -26.02541 -24.89034 -23.49526 -22.69795 -21.83130 -20.83672 -20.25640 -18.92775 -18.36056 -17.58883 -16.98381 -16.80907 -16.48509 -16.23666 -15.92130 -15.88905 -15.70383 -15.16352 -14.91971 -14.85695 -14.45346 -14.32436 -14.13230 -13.71488 -13.63211 -13.46171 -13.38119 -13.23447 -13.12185 -12.86655 -12.63393 -12.59963 -12.31819 -12.22654 -12.11202 -12.06496 -12.00614 -11.83326 -11.61103 -11.36392 -11.03689 -10.74173 -10.36875 -9.94953 -9.70958 -9.69550 -8.33156 -5.99338 -0.34855 0.43340 1.35895 1.38954 1.40625 1.55139 2.00713 2.26787 2.79994 2.80625 3.09017 3.26795 3.70929 3.78688 3.87576 4.03963 4.09161 4.12601 4.16895 4.19320 4.31788 4.36467 4.43144 4.50419 4.55025 4.63982 4.75776 4.77685 4.84981 4.88560 4.94427 4.96970 5.00900 5.03567 5.06600 5.11193 5.19901 5.33436 5.35792 5.36056 5.39550 5.43917 5.44383 5.53179 5.64335 5.95727 6.08202 6.45915 6.48405 7.15065 7.46184 8.01153 8.69022 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.029795 B = 0.001951 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.538907 B =14349.094613 C =14968.056427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.082 4.082 5 C -0.048 4.048 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.192 4.192 9 C 0.405 3.595 10 O -0.486 6.486 11 C -0.138 4.138 12 C -0.108 4.108 13 C 0.438 3.562 14 O -0.628 6.628 15 N -0.465 5.465 16 C 0.123 3.877 17 C -0.344 4.344 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.900 5.900 21 Si 0.993 3.007 22 H -0.272 1.272 23 H -0.266 1.266 24 H -0.275 1.275 25 C -0.071 4.071 26 C -0.134 4.134 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.148 0.852 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.045 0.955 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.273 0.727 46 H 0.141 0.859 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 -23.768 8.399 28.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.119 4.119 5 C -0.048 4.048 6 C -0.151 4.151 7 C -0.089 4.089 8 C -0.193 4.193 9 C 0.285 3.715 10 O -0.364 6.364 11 C -0.176 4.176 12 C -0.148 4.148 13 C 0.228 3.772 14 O -0.516 6.516 15 N -0.184 5.184 16 C -0.020 4.020 17 C -0.472 4.472 18 H 0.093 0.907 19 C -0.208 4.208 20 N -0.539 5.539 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.191 1.191 24 H -0.201 1.201 25 C -0.089 4.089 26 C -0.152 4.152 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.166 0.834 37 H 0.146 0.854 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.158 0.842 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.038 -23.557 8.512 27.790 hybrid contribution 0.424 1.086 -0.675 1.347 sum -11.614 -22.472 7.837 26.481 Atomic orbital electron populations 1.21796 0.95973 1.01867 1.01710 1.21528 0.95819 0.96110 1.02561 1.21577 0.93764 0.97426 1.02218 1.20751 0.95894 0.90838 1.04389 1.20494 0.94502 0.97083 0.92731 1.21250 1.00702 0.94086 0.99103 1.21511 0.95023 0.95014 0.97332 1.20454 1.07751 0.95535 0.95555 1.22708 0.71779 0.87009 0.89954 1.90483 1.42010 1.68205 1.35665 1.21669 1.04646 0.94769 0.96524 1.21230 1.03290 0.95766 0.94543 1.20918 0.83067 0.81759 0.91496 1.90452 1.59108 1.66730 1.35307 1.43882 1.56724 1.10758 1.06996 1.21429 0.99742 0.97101 0.83774 1.19705 1.25995 1.12844 0.88670 0.90686 1.26156 0.93762 0.99187 1.01650 1.70096 1.22450 1.29334 1.31973 0.84889 0.78142 0.77853 0.77509 1.19612 1.19139 1.20067 1.21712 0.94767 0.95129 0.97331 1.21323 1.00479 0.94324 0.99088 0.92934 0.92994 0.92284 0.91499 0.91435 0.92181 0.92207 0.89591 0.89593 0.83402 0.85406 0.87655 0.87310 0.88854 0.89504 0.93634 0.92796 0.91788 0.91733 0.84169 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.12 -0.99 5.93 30.59 0.18 -0.81 16 3 C -0.11 -1.10 5.20 30.59 0.16 -0.94 16 4 C -0.08 -0.79 5.34 29.85 0.16 -0.63 16 5 C -0.05 -0.72 5.14 -19.78 -0.10 -0.82 16 6 C -0.13 -2.23 9.68 22.22 0.22 -2.02 16 7 C -0.07 -1.56 9.60 22.58 0.22 -1.35 16 8 C -0.19 -4.78 5.87 -20.15 -0.12 -4.90 16 9 C 0.40 12.12 7.12 28.03 0.20 12.32 16 10 O -0.49 -16.88 15.98 -2.96 -0.05 -16.93 16 11 C -0.14 -4.45 3.60 29.85 0.11 -4.34 16 12 C -0.11 -4.15 3.51 29.85 0.10 -4.05 16 13 C 0.44 21.91 7.63 87.66 0.67 22.58 16 14 O -0.63 -35.04 15.67 -3.07 -0.05 -35.09 16 15 N -0.47 -24.96 3.02 -658.90 -1.99 -26.95 16 16 C 0.12 5.75 8.52 127.77 1.09 6.84 16 17 C -0.34 -20.05 9.29 84.04 0.78 -19.26 16 18 H 0.08 4.62 7.41 -2.91 -0.02 4.59 16 19 C -0.01 -0.34 5.11 84.93 0.43 0.09 16 20 N -0.90 -49.03 10.61 21.66 0.23 -48.80 16 21 Si 0.99 43.21 29.57 68.60 2.03 45.24 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.07 -1.50 9.47 22.58 0.21 -1.28 16 26 C -0.13 -2.23 9.68 22.23 0.22 -2.02 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.09 0.69 8.08 -2.38 -0.02 0.67 16 35 H 0.09 0.67 8.08 -2.39 -0.02 0.65 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.13 2.87 7.65 -2.91 -0.02 2.84 16 38 H 0.11 3.36 8.05 -2.39 -0.02 3.34 16 39 H 0.11 3.37 8.04 -2.39 -0.02 3.35 16 40 H 0.09 3.35 7.37 -2.39 -0.02 3.34 16 41 H 0.09 3.28 8.06 -2.39 -0.02 3.26 16 42 H 0.05 2.22 7.54 -2.38 -0.02 2.20 16 43 H 0.05 2.64 7.06 -2.39 -0.02 2.62 16 44 H 0.06 2.49 6.36 -2.39 -0.02 2.48 16 45 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 46 H 0.14 2.78 7.05 -2.91 -0.02 2.76 16 47 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -70.22 388.93 6.35 -63.87 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.94 Total: 19.89 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.24 Total: -1.23 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.76 Total: -75.75 kcal Atomic # 8 Polarization: -51.92 SS G_CDS: -0.10 Total: -52.01 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.22 6.35 -63.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263809753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.244 kcal (2) G-P(sol) polarization free energy of solvation -70.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds