Wall clock time and date at job start Tue Mar 31 2020 12:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47174 * 2 1 4 4 C 1.38273 * 119.94361 * 90.00275 * 3 2 1 5 5 C 1.38145 * 120.05465 * 180.02562 * 4 3 2 6 6 C 1.38734 * 119.94552 * 359.97438 * 5 4 3 7 7 O 1.35897 * 120.05665 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99793 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46876 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 11 9 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47061 * 119.99902 * 17 15 13 20 20 H 1.48503 * 109.47075 * 240.00004 * 17 15 13 21 21 C 1.46506 * 120.00264 * 0.28128 * 11 9 8 22 22 C 1.52998 * 109.47320 * 89.99349 * 21 11 9 23 23 C 1.52997 * 117.50231 * 243.62602 * 22 21 11 24 24 C 1.52998 * 117.50058 * 174.99994 * 22 21 11 25 25 C 1.38733 * 119.88395 * 0.27895 * 6 5 4 26 26 C 1.38148 * 119.94838 * 359.46401 * 25 6 5 27 27 H 1.09001 * 109.46896 * 60.00157 * 1 2 3 28 28 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47320 * 299.99900 * 1 2 3 30 30 H 1.09000 * 109.47147 * 239.99573 * 2 1 3 31 31 H 1.09001 * 109.46896 * 119.99842 * 2 1 3 32 32 H 1.07994 * 119.97341 * 359.97099 * 4 3 2 33 33 H 1.07993 * 120.03029 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47206 * 60.00256 * 8 7 6 35 35 H 1.08994 * 109.47548 * 299.99913 * 8 7 6 36 36 H 1.09001 * 109.47567 * 210.00057 * 12 11 9 37 37 H 1.09005 * 109.47076 * 330.00563 * 12 11 9 38 38 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.46996 * 209.99677 * 21 11 9 40 40 H 1.09001 * 109.46578 * 329.99540 * 21 11 9 41 41 H 1.09001 * 115.54721 * 29.33740 * 22 21 11 42 42 H 1.09000 * 117.49450 * 0.02562 * 23 22 21 43 43 H 1.08994 * 117.49954 * 145.01950 * 23 22 21 44 44 H 1.08996 * 117.50282 * 214.98430 * 24 22 21 45 45 H 1.09000 * 117.49560 * 0.02562 * 24 22 21 46 46 H 1.08009 * 120.02352 * 179.72687 * 25 6 5 47 47 H 1.07997 * 119.97042 * 180.22984 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1982 5 6 2.7224 3.3741 1.2008 6 6 2.9540 4.0292 0.0001 7 8 3.4070 5.3105 0.0000 8 6 3.6237 5.9219 -1.2732 9 6 4.1211 7.3307 -1.0757 10 8 4.2753 7.7679 0.0450 11 7 4.4004 8.1028 -2.1446 12 6 4.8896 9.4702 -1.9527 13 6 6.3949 9.4601 -1.8834 14 1 6.9334 8.5282 -1.9738 15 6 7.0848 10.6404 -1.7047 16 7 6.4291 11.7751 -1.5942 17 14 8.9509 10.6279 -1.6196 18 1 9.4439 9.2351 -1.7691 19 1 9.5018 11.4686 -2.7126 20 1 9.3902 11.1700 -0.3087 21 6 4.2146 7.5746 -3.4984 22 6 2.7919 7.8770 -3.9731 23 6 1.8723 6.6866 -4.2525 24 6 2.4346 7.5080 -5.4143 25 6 2.7173 3.3758 -1.2007 26 6 2.2624 2.0714 -1.1981 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0816 1.5612 2.1326 33 1 2.9016 3.8820 2.1368 34 1 2.6872 5.9424 -1.8306 35 1 4.3653 5.3491 -1.8299 36 1 4.5685 10.0917 -2.7886 37 1 4.4859 9.8736 -1.0239 38 1 6.9145 12.6055 -1.4688 39 1 4.9303 8.0443 -4.1730 40 1 4.3742 6.4963 -3.4927 41 1 2.3387 8.7767 -3.5569 42 1 2.2807 5.6879 -4.0976 43 1 0.8138 6.8029 -4.0198 44 1 1.7461 8.1647 -5.9461 45 1 3.2130 7.0494 -6.0242 46 1 2.8926 3.8852 -2.1368 47 1 2.0815 1.5612 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264023181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:09 Heat of formation + Delta-G solvation = -30.587351 kcal Electronic energy + Delta-G solvation = -26188.225141 eV Core-core repulsion = 22529.979054 eV Total energy + Delta-G solvation = -3658.246087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.35000 -39.17896 -37.72927 -37.10891 -34.49032 -33.70117 -32.59465 -31.18179 -29.56251 -28.43522 -27.34569 -25.89900 -23.80517 -23.21624 -22.40467 -22.34971 -20.93086 -20.74314 -18.67107 -18.29962 -16.75958 -16.58008 -16.02089 -15.91121 -15.69717 -15.23490 -14.87799 -14.58002 -14.49369 -14.23585 -13.97763 -13.70910 -13.43355 -13.36068 -13.08024 -12.68103 -12.58120 -12.32236 -12.10648 -11.91814 -11.56799 -11.50202 -11.35907 -11.25583 -11.18708 -10.92876 -10.84960 -10.82353 -10.65712 -10.39682 -10.13228 -9.91337 -9.64033 -9.09519 -8.96678 -8.45866 -8.10177 -7.77956 -6.06819 -4.11553 1.24910 1.34260 2.93977 3.24573 3.28987 3.37111 3.41354 3.65802 3.77300 4.06566 4.43335 4.59288 4.61937 4.72832 4.79168 4.85522 4.92776 4.97129 5.07104 5.12900 5.20301 5.23866 5.25697 5.28373 5.29928 5.38621 5.41134 5.55891 5.60414 5.63605 5.73349 5.76447 5.89955 5.92538 5.95690 5.99272 6.09662 6.20761 6.29361 6.36401 6.51193 6.68545 6.96932 7.37964 7.39723 7.49771 7.89401 8.19157 8.28018 8.84572 8.99232 9.53585 11.01432 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002997 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.278210 B = 9341.898845 C =10562.268654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 C -0.129 4.129 4 C -0.078 4.078 5 C -0.148 4.148 6 C 0.133 3.867 7 O -0.287 6.287 8 C 0.041 3.959 9 C 0.510 3.490 10 O -0.516 6.516 11 N -0.590 5.590 12 C 0.247 3.753 13 C -0.527 4.527 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.139 3.861 22 C -0.168 4.168 23 C -0.189 4.189 24 C -0.173 4.173 25 C -0.209 4.209 26 C -0.077 4.077 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.036 0.964 37 H 0.045 0.955 38 H 0.263 0.737 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.127 0.873 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 -20.749 -4.165 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.116 4.116 3 C -0.130 4.130 4 C -0.096 4.096 5 C -0.167 4.167 6 C 0.087 3.913 7 O -0.199 6.199 8 C -0.038 4.038 9 C 0.295 3.705 10 O -0.391 6.391 11 N -0.323 5.323 12 C 0.129 3.871 13 C -0.566 4.566 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.015 3.985 22 C -0.187 4.187 23 C -0.226 4.226 24 C -0.210 4.210 25 C -0.228 4.228 26 C -0.095 4.095 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.145 0.855 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.700 -20.151 -3.356 23.542 hybrid contribution 1.003 0.117 -0.382 1.079 sum -10.697 -20.034 -3.738 23.017 Atomic orbital electron populations 1.21767 0.95024 1.01426 1.02251 1.20442 0.95930 0.92652 1.02551 1.19757 1.03307 0.96791 0.93096 1.20807 0.97618 0.93470 0.97697 1.20469 1.04607 0.95048 0.96590 1.19156 0.93910 0.84007 0.94274 1.86200 1.79844 1.23669 1.30183 1.22729 1.01865 0.94212 0.84990 1.19695 0.79284 0.85873 0.85685 1.90722 1.51566 1.73537 1.23304 1.48118 1.63934 1.16640 1.03635 1.19346 0.94349 0.75004 0.98410 1.21453 0.91386 0.93530 1.50241 0.92363 1.24934 0.98822 0.95324 0.94995 1.69937 1.35632 0.98160 1.49531 0.86437 0.85201 0.78057 0.77701 1.19786 1.20950 1.20839 1.21082 0.94029 0.98207 0.85228 1.22970 0.97191 0.99759 0.98796 1.23069 0.99497 0.95878 1.04125 1.22892 1.03494 1.03544 0.91094 1.21263 1.07563 0.96861 0.97098 1.20769 0.97455 0.93694 0.97578 0.92623 0.92645 0.92560 0.91328 0.91270 0.85585 0.84994 0.89396 0.89821 0.94576 0.93708 0.92722 0.88936 0.91712 0.87113 0.89110 0.88994 0.88845 0.88662 0.85521 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.89 37.16 0.37 -0.62 16 2 C -0.08 -0.57 6.06 -27.89 -0.17 -0.74 16 3 C -0.13 -1.27 5.13 -104.60 -0.54 -1.81 16 4 C -0.08 -0.82 9.69 -39.60 -0.38 -1.20 16 5 C -0.15 -1.92 9.99 -39.43 -0.39 -2.31 16 6 C 0.13 1.91 6.69 -39.22 -0.26 1.65 16 7 O -0.29 -5.04 9.67 -39.33 -0.38 -5.42 16 8 C 0.04 0.65 3.77 36.01 0.14 0.79 16 9 C 0.51 10.87 7.75 -10.98 -0.09 10.78 16 10 O -0.52 -13.64 16.08 -14.35 -0.23 -13.87 16 11 N -0.59 -12.22 2.46 -175.06 -0.43 -12.65 16 12 C 0.25 6.36 5.16 -5.20 -0.03 6.34 16 13 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 14 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 C 0.14 2.14 5.50 -4.04 -0.02 2.12 16 22 C -0.17 -2.21 5.97 -90.62 -0.54 -2.75 16 23 C -0.19 -1.95 9.19 -26.73 -0.25 -2.20 16 24 C -0.17 -1.80 10.25 -26.73 -0.27 -2.08 16 25 C -0.21 -2.47 9.04 -39.43 -0.36 -2.83 16 26 C -0.08 -0.78 9.69 -39.61 -0.38 -1.17 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 34 H 0.09 1.17 6.39 -51.93 -0.33 0.84 16 35 H 0.08 1.14 6.93 -51.93 -0.36 0.78 16 36 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 37 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 40 H 0.06 0.82 6.17 -51.93 -0.32 0.50 16 41 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 42 H 0.09 0.82 7.87 -51.93 -0.41 0.41 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.13 1.29 6.30 -52.48 -0.33 0.96 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 391.65 15.07 5.90 5.90 Total: -1.00 -33.62 391.65 -10.61 -44.23 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.59 Total: 0.18 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -3.60 Total: -9.52 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.31 Total: -38.32 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.61 Total: -19.30 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.62 -10.61 -44.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.643 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds