Wall clock time and date at job start Tue Mar 31 2020 12:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.47174 * 2 1 4 4 C 1.38273 * 119.94361 * 90.00275 * 3 2 1 5 5 C 1.38145 * 120.05465 * 180.02562 * 4 3 2 6 6 C 1.38734 * 119.94552 * 359.97438 * 5 4 3 7 7 O 1.35897 * 120.05665 * 180.02562 * 6 5 4 8 8 C 1.42899 * 116.99793 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46876 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 C 1.50697 * 109.46949 * 90.00203 * 12 11 9 14 14 H 1.08004 * 120.00186 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00081 * 180.02562 * 13 12 11 16 16 N 1.31519 * 120.00096 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47061 * 119.99902 * 17 15 13 20 20 H 1.48503 * 109.47075 * 240.00004 * 17 15 13 21 21 C 1.46506 * 120.00264 * 0.28128 * 11 9 8 22 22 C 1.52998 * 109.47320 * 89.99349 * 21 11 9 23 23 C 1.52997 * 117.50231 * 243.62602 * 22 21 11 24 24 C 1.52998 * 117.50058 * 174.99994 * 22 21 11 25 25 C 1.38733 * 119.88395 * 0.27895 * 6 5 4 26 26 C 1.38148 * 119.94838 * 359.46401 * 25 6 5 27 27 H 1.09001 * 109.46896 * 60.00157 * 1 2 3 28 28 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47320 * 299.99900 * 1 2 3 30 30 H 1.09000 * 109.47147 * 239.99573 * 2 1 3 31 31 H 1.09001 * 109.46896 * 119.99842 * 2 1 3 32 32 H 1.07994 * 119.97341 * 359.97099 * 4 3 2 33 33 H 1.07993 * 120.03029 * 179.97438 * 5 4 3 34 34 H 1.09004 * 109.47206 * 60.00256 * 8 7 6 35 35 H 1.08994 * 109.47548 * 299.99913 * 8 7 6 36 36 H 1.09001 * 109.47567 * 210.00057 * 12 11 9 37 37 H 1.09005 * 109.47076 * 330.00563 * 12 11 9 38 38 H 0.96991 * 119.99957 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.46996 * 209.99677 * 21 11 9 40 40 H 1.09001 * 109.46578 * 329.99540 * 21 11 9 41 41 H 1.09001 * 115.54721 * 29.33740 * 22 21 11 42 42 H 1.09000 * 117.49450 * 0.02562 * 23 22 21 43 43 H 1.08994 * 117.49954 * 145.01950 * 23 22 21 44 44 H 1.08996 * 117.50282 * 214.98430 * 24 22 21 45 45 H 1.09000 * 117.49560 * 0.02562 * 24 22 21 46 46 H 1.08009 * 120.02352 * 179.72687 * 25 6 5 47 47 H 1.07997 * 119.97042 * 180.22984 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0715 1.1982 5 6 2.7224 3.3741 1.2008 6 6 2.9540 4.0292 0.0001 7 8 3.4070 5.3105 0.0000 8 6 3.6237 5.9219 -1.2732 9 6 4.1211 7.3307 -1.0757 10 8 4.2753 7.7679 0.0450 11 7 4.4004 8.1028 -2.1446 12 6 4.8896 9.4702 -1.9527 13 6 6.3949 9.4601 -1.8834 14 1 6.9334 8.5282 -1.9738 15 6 7.0848 10.6404 -1.7047 16 7 6.4291 11.7751 -1.5942 17 14 8.9509 10.6279 -1.6196 18 1 9.4439 9.2351 -1.7691 19 1 9.5018 11.4686 -2.7126 20 1 9.3902 11.1700 -0.3087 21 6 4.2146 7.5746 -3.4984 22 6 2.7919 7.8770 -3.9731 23 6 1.8723 6.6866 -4.2525 24 6 2.4346 7.5080 -5.4143 25 6 2.7173 3.3758 -1.2007 26 6 2.2624 2.0714 -1.1981 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0816 1.5612 2.1326 33 1 2.9016 3.8820 2.1368 34 1 2.6872 5.9424 -1.8306 35 1 4.3653 5.3491 -1.8299 36 1 4.5685 10.0917 -2.7886 37 1 4.4859 9.8736 -1.0239 38 1 6.9145 12.6055 -1.4688 39 1 4.9303 8.0443 -4.1730 40 1 4.3742 6.4963 -3.4927 41 1 2.3387 8.7767 -3.5569 42 1 2.2807 5.6879 -4.0976 43 1 0.8138 6.8029 -4.0198 44 1 1.7461 8.1647 -5.9461 45 1 3.2130 7.0494 -6.0242 46 1 2.8926 3.8852 -2.1368 47 1 2.0815 1.5612 -2.1326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264023181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:08 Heat of formation + Delta-G solvation = -48.296438 kcal Electronic energy + Delta-G solvation = -26188.993064 eV Core-core repulsion = 22529.979054 eV Total energy + Delta-G solvation = -3659.014011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51420 -40.53326 -38.75411 -38.31681 -36.19024 -34.66381 -34.40761 -32.05589 -30.96179 -29.63897 -28.67254 -27.48854 -25.00330 -24.38768 -23.57552 -23.18904 -21.92401 -21.68874 -20.19124 -19.39815 -18.65571 -18.10119 -17.38860 -17.30359 -16.77522 -16.44137 -16.02217 -15.95222 -15.73484 -15.31899 -14.85246 -14.80418 -14.52177 -14.41056 -14.17595 -14.07973 -13.82082 -13.61227 -13.33448 -13.25571 -12.96389 -12.83319 -12.61210 -12.58806 -12.28551 -12.25644 -12.01162 -11.87344 -11.81595 -11.71580 -11.59366 -11.26962 -10.96307 -10.67073 -10.61067 -9.93683 -9.55878 -9.02599 -8.25146 -6.39692 0.40891 0.46129 1.34863 1.37862 1.48820 1.61351 1.65186 2.35575 2.62729 2.80437 2.95435 3.05000 3.42561 3.81727 3.84741 3.92580 3.94835 3.98703 4.05026 4.05448 4.15988 4.29342 4.32674 4.45722 4.53999 4.62102 4.68411 4.70965 4.79393 4.83959 4.85759 4.96356 5.05743 5.07666 5.15683 5.18057 5.20812 5.29162 5.33430 5.36740 5.42804 5.46729 5.50901 5.73911 5.76489 5.88145 6.01942 6.38906 6.61904 6.69928 7.21179 7.35796 8.82694 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015303 B = 0.002997 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.278210 B = 9341.898845 C =10562.268654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 C -0.125 4.125 4 C -0.080 4.080 5 C -0.169 4.169 6 C 0.098 3.902 7 O -0.325 6.325 8 C 0.059 3.941 9 C 0.498 3.502 10 O -0.584 6.584 11 N -0.591 5.591 12 C 0.263 3.737 13 C -0.543 4.543 14 H 0.055 0.945 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.267 1.267 20 H -0.283 1.283 21 C 0.137 3.863 22 C -0.198 4.198 23 C -0.170 4.170 24 C -0.156 4.156 25 C -0.208 4.208 26 C -0.077 4.077 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.029 0.971 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.147 0.853 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.141 -24.488 -6.512 28.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.125 4.125 4 C -0.098 4.098 5 C -0.188 4.188 6 C 0.053 3.947 7 O -0.239 6.239 8 C -0.019 4.019 9 C 0.286 3.714 10 O -0.464 6.464 11 N -0.322 5.322 12 C 0.143 3.857 13 C -0.581 4.581 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.568 5.568 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.192 1.192 20 H -0.209 1.209 21 C 0.015 3.985 22 C -0.218 4.218 23 C -0.206 4.206 24 C -0.194 4.194 25 C -0.227 4.227 26 C -0.095 4.095 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.047 0.953 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.099 0.901 42 H 0.133 0.867 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.130 0.870 46 H 0.164 0.836 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.992 -23.931 -5.762 27.380 hybrid contribution 0.986 1.208 0.361 1.601 sum -11.005 -22.722 -5.400 25.818 Atomic orbital electron populations 1.21759 0.94505 1.02286 1.01836 1.20510 0.96235 0.90934 1.03754 1.20165 1.01651 0.97974 0.92694 1.21070 0.96926 0.92499 0.99278 1.20633 1.05770 0.96262 0.96156 1.19436 0.96190 0.83156 0.95891 1.86137 1.81101 1.25699 1.30950 1.22572 1.03706 0.90383 0.85262 1.20730 0.78114 0.87980 0.84588 1.90676 1.54499 1.75351 1.25887 1.48070 1.63086 1.14882 1.06184 1.18771 0.93453 0.77969 0.95556 1.21714 0.92454 0.93559 1.50387 0.92703 1.25873 1.04049 0.94886 0.94383 1.70057 1.37712 0.98859 1.50129 0.85353 0.78935 0.78514 0.77919 1.19031 1.19186 1.20919 1.21366 0.95403 0.99912 0.81852 1.22678 0.96451 1.00748 1.01876 1.23224 0.99259 0.95635 1.02518 1.23011 1.03552 1.02970 0.89826 1.21494 1.06954 0.97523 0.96685 1.21156 0.96309 0.93085 0.98958 0.92815 0.91199 0.93245 0.89904 0.90392 0.83553 0.86134 0.86408 0.86858 0.95347 0.98644 0.92360 0.89960 0.88015 0.90066 0.86679 0.88350 0.88215 0.86996 0.83581 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 71.98 0.71 -0.77 16 2 C -0.08 -0.84 6.06 29.85 0.18 -0.66 16 3 C -0.12 -2.08 5.13 -19.85 -0.10 -2.18 16 4 C -0.08 -1.56 9.69 22.26 0.22 -1.34 16 5 C -0.17 -4.42 9.99 22.37 0.22 -4.19 16 6 C 0.10 2.77 6.69 22.51 0.15 2.92 16 7 O -0.33 -11.65 9.67 -73.35 -0.71 -12.36 16 8 C 0.06 1.82 3.77 71.24 0.27 2.09 16 9 C 0.50 22.10 7.75 87.66 0.68 22.78 16 10 O -0.58 -33.12 16.08 16.00 0.26 -32.87 16 11 N -0.59 -25.41 2.46 -826.15 -2.03 -27.44 16 12 C 0.26 14.45 5.16 85.63 0.44 14.90 16 13 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 14 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 15 C 0.01 0.41 5.46 84.66 0.46 0.88 16 16 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 17 Si 0.97 45.46 29.54 68.60 2.03 47.48 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 C 0.14 4.11 5.50 86.38 0.47 4.58 16 22 C -0.20 -5.04 5.97 -10.80 -0.06 -5.10 16 23 C -0.17 -2.92 9.19 30.59 0.28 -2.64 16 24 C -0.16 -2.81 10.25 30.59 0.31 -2.49 16 25 C -0.21 -4.34 9.04 22.37 0.20 -4.14 16 26 C -0.08 -1.29 9.69 22.25 0.22 -1.07 16 27 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.08 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.12 3.25 8.06 -2.91 -0.02 3.22 16 34 H 0.12 2.88 6.39 -2.38 -0.02 2.86 16 35 H 0.11 2.80 6.93 -2.39 -0.02 2.78 16 36 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 37 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 38 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 39 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 40 H 0.10 2.26 6.17 -2.39 -0.01 2.25 16 41 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.12 1.45 7.87 -2.39 -0.02 1.43 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.15 2.34 6.30 -2.91 -0.02 2.32 16 47 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -79.72 391.65 5.67 -74.05 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.94 Total: 15.51 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.90 Total: -7.86 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -1.74 Total: -83.95 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.45 Total: -45.23 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.72 5.67 -74.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264023181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.750 kcal (2) G-P(sol) polarization free energy of solvation -79.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds