Wall clock time and date at job start Tue Mar 31 2020 12:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 C 1.52992 * 109.61353 * 302.90698 * 3 2 1 5 5 N 1.46499 * 109.47515 * 305.56705 * 4 3 2 6 6 C 1.34783 * 120.00370 * 185.45670 * 5 4 3 7 7 O 1.21548 * 119.99625 * 359.97438 * 6 5 4 8 8 C 1.47882 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.39917 * 120.02441 * 359.71970 * 8 6 5 10 10 C 1.38331 * 120.35624 * 179.71503 * 9 8 6 11 11 C 1.37751 * 120.41301 * 0.56557 * 10 9 8 12 12 C 1.40755 * 120.03573 * 359.71214 * 11 10 9 13 13 C 1.41438 * 120.17540 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99865 * 331.40419 * 13 12 11 15 15 C 1.39935 * 120.00037 * 151.39967 * 13 12 11 16 16 N 1.30820 * 119.99998 * 349.89541 * 15 13 12 17 17 Si 1.86806 * 119.99860 * 169.89484 * 15 13 12 18 18 H 1.48501 * 109.46827 * 90.00454 * 17 15 13 19 19 H 1.48495 * 109.46969 * 210.00211 * 17 15 13 20 20 H 1.48498 * 109.47170 * 330.00349 * 17 15 13 21 21 C 1.38993 * 120.02376 * 179.97438 * 8 6 5 22 22 C 1.53201 * 109.54064 * 63.12855 * 3 2 1 23 23 C 1.53085 * 109.15259 * 62.89543 * 22 3 2 24 24 O 1.42900 * 109.42497 * 57.60537 * 23 22 3 25 25 C 1.42903 * 114.09746 * 298.83179 * 24 23 22 26 26 C 1.53092 * 109.41260 * 61.16012 * 25 24 23 27 27 H 1.08996 * 109.47452 * 186.97470 * 1 2 3 28 28 H 1.09005 * 109.47300 * 306.96957 * 1 2 3 29 29 H 1.08998 * 109.47159 * 66.96948 * 1 2 3 30 30 H 1.09001 * 109.46999 * 239.99659 * 2 1 3 31 31 H 1.09003 * 109.47165 * 119.99548 * 2 1 3 32 32 H 1.09008 * 109.47349 * 65.56415 * 4 3 2 33 33 H 1.09004 * 109.47058 * 185.56292 * 4 3 2 34 34 H 0.96995 * 120.00083 * 5.44453 * 5 4 3 35 35 H 1.08004 * 119.82100 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.79155 * 180.26004 * 10 9 8 37 37 H 1.07994 * 119.98074 * 179.73989 * 11 10 9 38 38 H 0.97003 * 120.00490 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.20466 * 359.97438 * 21 8 6 40 40 H 1.09006 * 109.53254 * 302.98425 * 22 3 2 41 41 H 1.09002 * 109.51711 * 182.79580 * 22 3 2 42 42 H 1.09002 * 109.48397 * 297.61185 * 23 22 3 43 43 H 1.09002 * 109.48008 * 177.59091 * 23 22 3 44 44 H 1.08996 * 109.48224 * 181.13930 * 25 24 23 45 45 H 1.09003 * 109.48198 * 301.17076 * 25 24 23 46 46 H 1.09001 * 109.52442 * 62.29602 * 26 25 24 47 47 H 1.09002 * 109.52575 * 182.48548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4730 2.1877 -1.2099 5 7 1.7909 1.4465 -2.4330 6 6 1.4862 1.9703 -3.6369 7 8 0.9473 3.0575 -3.7078 8 6 1.8077 1.2224 -4.8715 9 6 2.4334 -0.0265 -4.7906 10 6 2.7319 -0.7347 -5.9407 11 6 2.4273 -0.2139 -7.1791 12 6 1.8030 1.0436 -7.2805 13 6 1.4885 1.5809 -8.5505 14 1 2.0849 1.3166 -9.4113 15 6 0.4047 2.4547 -8.6916 16 7 -0.4342 2.6215 -7.7017 17 14 0.1558 3.3829 -10.2935 18 1 -0.6949 2.5769 -11.2055 19 1 -0.5089 4.6813 -10.0150 20 1 1.4732 3.6284 -10.9332 21 6 1.4932 1.7619 -6.1132 22 6 1.5955 2.1432 1.2879 23 6 2.2316 1.4379 2.4885 24 8 3.6536 1.4487 2.3475 25 6 4.1298 0.7667 1.1856 26 6 3.5703 1.4449 -0.0677 27 1 -0.3634 -1.0200 0.1248 28 1 -0.3634 0.6180 0.8211 29 1 -0.3633 0.4020 -0.9457 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.3911 2.2748 -1.1088 33 1 1.9143 3.1830 -1.2631 34 1 2.2208 0.5789 -2.3764 35 1 2.6809 -0.4416 -3.8247 36 1 3.2111 -1.6997 -5.8675 37 1 2.6673 -0.7709 -8.0727 38 1 -1.1853 3.2275 -7.7994 39 1 1.0136 2.7272 -6.1806 40 1 0.5097 2.0973 1.3716 41 1 1.9164 3.1846 1.2652 42 1 1.8785 0.4076 2.5339 43 1 1.9533 1.9581 3.4050 44 1 5.2189 0.8036 1.1632 45 1 3.8018 -0.2724 1.2139 46 1 3.9310 2.4723 -0.1177 47 1 3.8966 0.8998 -0.9534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266666802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:55 Heat of formation + Delta-G solvation = -82.383553 kcal Electronic energy + Delta-G solvation = -26962.304095 eV Core-core repulsion = 23301.811956 eV Total energy + Delta-G solvation = -3660.492139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.61634 -38.98187 -37.13435 -36.32222 -33.77943 -33.17353 -31.51721 -30.76881 -30.21761 -29.43903 -27.27303 -25.28760 -24.49212 -23.64076 -22.92802 -21.78477 -20.90912 -19.56064 -18.48610 -17.82033 -16.61649 -16.23823 -15.98474 -15.63792 -15.42614 -15.17513 -14.97135 -14.65110 -14.49409 -14.04871 -13.87147 -13.44922 -13.18539 -12.84826 -12.65345 -12.59615 -12.50478 -12.26621 -12.13364 -11.92287 -11.63776 -11.50410 -11.14665 -11.09735 -11.00655 -10.91932 -10.74473 -10.52815 -10.49220 -10.32810 -10.01240 -9.71685 -9.59844 -9.26658 -9.01038 -8.62473 -7.63497 -7.48667 -6.73618 -4.43832 2.20069 2.81190 3.08216 3.11178 3.14406 3.63691 3.71395 3.87173 3.93862 4.39075 4.40606 4.51948 4.67364 4.80085 4.90009 4.95029 4.99662 5.21965 5.28548 5.32274 5.44357 5.49257 5.54324 5.57563 5.59751 5.66786 5.72845 5.79220 5.85480 5.92494 5.98329 6.05510 6.09294 6.14407 6.23685 6.28133 6.69774 6.87330 6.97236 6.98850 7.00325 7.22319 7.37638 7.67997 7.74926 7.91907 8.10426 8.19283 8.50862 8.81627 8.82904 8.96732 10.19782 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.002908 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.496763 B = 9627.022590 C =10093.782634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.070 4.070 4 C 0.133 3.867 5 N -0.734 5.734 6 C 0.563 3.437 7 O -0.546 6.546 8 C -0.131 4.131 9 C -0.213 4.213 10 C -0.101 4.101 11 C -0.207 4.207 12 C 0.098 3.902 13 C -0.461 4.461 14 H 0.080 0.920 15 C 0.070 3.930 16 N -0.793 5.793 17 Si 0.913 3.087 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.086 4.086 22 C -0.145 4.145 23 C 0.061 3.939 24 O -0.384 6.384 25 C 0.060 3.940 26 C -0.147 4.147 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.397 0.603 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.283 0.717 39 H 0.137 0.863 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -4.165 16.741 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.070 4.070 4 C 0.009 3.991 5 N -0.389 5.389 6 C 0.353 3.647 7 O -0.424 6.424 8 C -0.134 4.134 9 C -0.233 4.233 10 C -0.119 4.119 11 C -0.227 4.227 12 C 0.095 3.905 13 C -0.490 4.490 14 H 0.098 0.902 15 C -0.147 4.147 16 N -0.418 5.418 17 Si 0.737 3.263 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.106 4.106 22 C -0.183 4.183 23 C -0.015 4.015 24 O -0.303 6.303 25 C -0.016 4.016 26 C -0.184 4.184 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.234 0.766 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.155 0.845 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.198 -3.146 16.886 17.472 hybrid contribution -0.248 -0.222 -0.903 0.962 sum 2.950 -3.368 15.983 16.598 Atomic orbital electron populations 1.21881 0.95307 1.01667 1.02583 1.21682 0.96700 0.95207 1.02054 1.20858 0.95283 0.95970 0.94897 1.21253 1.00003 0.95122 0.82708 1.45978 1.64404 1.23243 1.05256 1.18836 0.77137 0.85205 0.83511 1.90699 1.42753 1.21587 1.87375 1.19508 1.05256 0.96141 0.92495 1.20344 1.09687 0.96881 0.96368 1.20436 1.00463 0.98011 0.93038 1.21157 1.09237 0.96678 0.95640 1.17627 0.89624 0.89959 0.93280 1.19572 1.11370 1.23319 0.94764 0.90214 1.25946 0.94968 0.95397 0.98427 1.69750 1.10569 1.29566 1.31883 0.86231 0.79460 0.79106 0.81462 1.19490 1.20032 1.18506 1.21732 0.98887 1.00418 0.89541 1.22233 1.01504 1.00520 0.94063 1.22584 0.81125 0.99910 0.97929 1.87924 1.21278 1.77061 1.44021 1.22616 0.99247 0.95067 0.84714 1.22275 0.94669 1.02705 0.98782 0.92755 0.92471 0.91857 0.91595 0.91630 0.91742 0.91684 0.76631 0.89430 0.88913 0.88580 0.90562 0.84517 0.90156 0.90668 0.92923 0.89023 0.88947 0.92968 0.90650 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.15 37.16 0.34 -1.18 16 2 C -0.12 -1.10 4.15 -26.73 -0.11 -1.21 16 3 C -0.07 -0.70 0.31 -154.31 -0.05 -0.75 16 4 C 0.13 1.81 3.99 -4.05 -0.02 1.80 16 5 N -0.73 -11.75 4.97 -61.24 -0.30 -12.05 16 6 C 0.56 12.18 7.77 -12.31 -0.10 12.08 16 7 O -0.55 -13.71 16.33 5.32 0.09 -13.62 16 8 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 9 C -0.21 -4.39 9.55 -38.92 -0.37 -4.76 16 10 C -0.10 -2.13 10.01 -39.73 -0.40 -2.52 16 11 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 12 C 0.10 2.57 5.55 -106.87 -0.59 1.98 16 13 C -0.46 -12.11 9.06 -37.73 -0.34 -12.45 16 14 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 15 C 0.07 1.79 5.27 -17.35 -0.09 1.70 16 16 N -0.79 -21.11 10.79 55.55 0.60 -20.52 16 17 Si 0.91 18.90 29.57 -169.99 -5.03 13.88 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 21 C -0.09 -2.28 8.20 -38.45 -0.32 -2.59 16 22 C -0.15 -1.28 4.72 -26.58 -0.13 -1.41 16 23 C 0.06 0.51 6.57 37.20 0.24 0.75 16 24 O -0.38 -3.99 10.77 -35.23 -0.38 -4.37 16 25 C 0.06 0.54 6.57 37.20 0.24 0.78 16 26 C -0.15 -1.45 4.76 -26.59 -0.13 -1.57 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.49 6.14 -51.93 -0.32 0.17 16 29 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 30 H 0.07 0.65 6.56 -51.93 -0.34 0.30 16 31 H 0.07 0.54 5.01 -51.93 -0.26 0.27 16 32 H 0.06 0.92 6.88 -51.92 -0.36 0.56 16 33 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 34 H 0.40 5.57 4.29 -40.82 -0.18 5.39 16 35 H 0.09 1.48 6.38 -52.48 -0.33 1.15 16 36 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 39 H 0.14 3.97 5.76 -52.49 -0.30 3.66 16 40 H 0.08 0.65 6.24 -51.93 -0.32 0.32 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.40 6.54 -51.93 -0.34 0.06 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.42 6.67 -51.93 -0.35 0.07 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.08 0.77 7.45 -51.93 -0.39 0.38 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -29.96 360.99 -9.16 -39.12 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -6.77 Total: 10.43 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.80 Total: -18.31 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.30 Total: -32.57 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.29 Total: -17.99 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.96 -9.16 -39.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266666802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.264 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds