Wall clock time and date at job start Tue Mar 31 2020 12:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47191 * 2 1 4 4 C 1.52992 * 109.61353 * 302.90698 * 3 2 1 5 5 N 1.46499 * 109.47515 * 305.56705 * 4 3 2 6 6 C 1.34783 * 120.00370 * 185.45670 * 5 4 3 7 7 O 1.21548 * 119.99625 * 359.97438 * 6 5 4 8 8 C 1.47882 * 120.00148 * 179.97438 * 6 5 4 9 9 C 1.39917 * 120.02441 * 359.71970 * 8 6 5 10 10 C 1.38331 * 120.35624 * 179.71503 * 9 8 6 11 11 C 1.37751 * 120.41301 * 0.56557 * 10 9 8 12 12 C 1.40755 * 120.03573 * 359.71214 * 11 10 9 13 13 C 1.41438 * 120.17540 * 180.02562 * 12 11 10 14 14 H 1.08008 * 119.99865 * 331.40419 * 13 12 11 15 15 C 1.39935 * 120.00037 * 151.39967 * 13 12 11 16 16 N 1.30820 * 119.99998 * 349.89541 * 15 13 12 17 17 Si 1.86806 * 119.99860 * 169.89484 * 15 13 12 18 18 H 1.48501 * 109.46827 * 90.00454 * 17 15 13 19 19 H 1.48495 * 109.46969 * 210.00211 * 17 15 13 20 20 H 1.48498 * 109.47170 * 330.00349 * 17 15 13 21 21 C 1.38993 * 120.02376 * 179.97438 * 8 6 5 22 22 C 1.53201 * 109.54064 * 63.12855 * 3 2 1 23 23 C 1.53085 * 109.15259 * 62.89543 * 22 3 2 24 24 O 1.42900 * 109.42497 * 57.60537 * 23 22 3 25 25 C 1.42903 * 114.09746 * 298.83179 * 24 23 22 26 26 C 1.53092 * 109.41260 * 61.16012 * 25 24 23 27 27 H 1.08996 * 109.47452 * 186.97470 * 1 2 3 28 28 H 1.09005 * 109.47300 * 306.96957 * 1 2 3 29 29 H 1.08998 * 109.47159 * 66.96948 * 1 2 3 30 30 H 1.09001 * 109.46999 * 239.99659 * 2 1 3 31 31 H 1.09003 * 109.47165 * 119.99548 * 2 1 3 32 32 H 1.09008 * 109.47349 * 65.56415 * 4 3 2 33 33 H 1.09004 * 109.47058 * 185.56292 * 4 3 2 34 34 H 0.96995 * 120.00083 * 5.44453 * 5 4 3 35 35 H 1.08004 * 119.82100 * 359.97438 * 9 8 6 36 36 H 1.08002 * 119.79155 * 180.26004 * 10 9 8 37 37 H 1.07994 * 119.98074 * 179.73989 * 11 10 9 38 38 H 0.97003 * 120.00490 * 179.97438 * 16 15 13 39 39 H 1.08002 * 120.20466 * 359.97438 * 21 8 6 40 40 H 1.09006 * 109.53254 * 302.98425 * 22 3 2 41 41 H 1.09002 * 109.51711 * 182.79580 * 22 3 2 42 42 H 1.09002 * 109.48397 * 297.61185 * 23 22 3 43 43 H 1.09002 * 109.48008 * 177.59091 * 23 22 3 44 44 H 1.08996 * 109.48224 * 181.13930 * 25 24 23 45 45 H 1.09003 * 109.48198 * 301.17076 * 25 24 23 46 46 H 1.09001 * 109.52442 * 62.29602 * 26 25 24 47 47 H 1.09002 * 109.52575 * 182.48548 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4730 2.1877 -1.2099 5 7 1.7909 1.4465 -2.4330 6 6 1.4862 1.9703 -3.6369 7 8 0.9473 3.0575 -3.7078 8 6 1.8077 1.2224 -4.8715 9 6 2.4334 -0.0265 -4.7906 10 6 2.7319 -0.7347 -5.9407 11 6 2.4273 -0.2139 -7.1791 12 6 1.8030 1.0436 -7.2805 13 6 1.4885 1.5809 -8.5505 14 1 2.0849 1.3166 -9.4113 15 6 0.4047 2.4547 -8.6916 16 7 -0.4342 2.6215 -7.7017 17 14 0.1558 3.3829 -10.2935 18 1 -0.6949 2.5769 -11.2055 19 1 -0.5089 4.6813 -10.0150 20 1 1.4732 3.6284 -10.9332 21 6 1.4932 1.7619 -6.1132 22 6 1.5955 2.1432 1.2879 23 6 2.2316 1.4379 2.4885 24 8 3.6536 1.4487 2.3475 25 6 4.1298 0.7667 1.1856 26 6 3.5703 1.4449 -0.0677 27 1 -0.3634 -1.0200 0.1248 28 1 -0.3634 0.6180 0.8211 29 1 -0.3633 0.4020 -0.9457 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.3911 2.2748 -1.1088 33 1 1.9143 3.1830 -1.2631 34 1 2.2208 0.5789 -2.3764 35 1 2.6809 -0.4416 -3.8247 36 1 3.2111 -1.6997 -5.8675 37 1 2.6673 -0.7709 -8.0727 38 1 -1.1853 3.2275 -7.7994 39 1 1.0136 2.7272 -6.1806 40 1 0.5097 2.0973 1.3716 41 1 1.9164 3.1846 1.2652 42 1 1.8785 0.4076 2.5339 43 1 1.9533 1.9581 3.4050 44 1 5.2189 0.8036 1.1632 45 1 3.8018 -0.2724 1.2139 46 1 3.9310 2.4723 -0.1177 47 1 3.8966 0.8998 -0.9534 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266666802.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:54 Heat of formation + Delta-G solvation = -100.176579 kcal Electronic energy + Delta-G solvation = -26963.075659 eV Core-core repulsion = 23301.811956 eV Total energy + Delta-G solvation = -3661.263703 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.59543 -40.49341 -38.82893 -37.40539 -35.61146 -34.58825 -32.31000 -31.96769 -31.48906 -31.27236 -28.46684 -27.12813 -25.28237 -24.73937 -23.90893 -23.07883 -22.69065 -21.22326 -19.66621 -19.19673 -18.07854 -17.22843 -17.09702 -16.87919 -16.73815 -16.47781 -16.32107 -15.92004 -15.63978 -15.36029 -15.15243 -14.93756 -14.62521 -14.30549 -14.19489 -13.74684 -13.54222 -13.43577 -13.14947 -13.02284 -12.90313 -12.78789 -12.66921 -12.54039 -12.21989 -12.21228 -11.91290 -11.81566 -11.69963 -11.51877 -11.30517 -11.11798 -11.07663 -10.78779 -10.33461 -10.12245 -9.45456 -9.35360 -8.60532 -6.41065 0.37195 1.00930 1.36131 1.45906 1.51377 2.10176 2.20059 2.25118 2.81343 3.02213 3.52217 3.59618 3.68112 3.70913 4.01597 4.09578 4.11285 4.24216 4.30719 4.40234 4.49122 4.54201 4.57193 4.59784 4.65641 4.68113 4.76769 4.82759 4.85447 4.90736 4.98118 5.05427 5.08740 5.10270 5.18331 5.19685 5.29530 5.32303 5.34837 5.46622 5.50215 5.52860 5.85764 5.90879 6.06375 6.28604 6.31449 6.51091 6.68269 6.88932 6.94574 7.31370 8.34527 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023814 B = 0.002908 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.496763 B = 9627.022590 C =10093.782634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.060 4.060 4 C 0.132 3.868 5 N -0.706 5.706 6 C 0.558 3.442 7 O -0.591 6.591 8 C -0.142 4.142 9 C -0.190 4.190 10 C -0.098 4.098 11 C -0.211 4.211 12 C 0.065 3.935 13 C -0.498 4.498 14 H 0.083 0.917 15 C 0.025 3.975 16 N -0.835 5.835 17 Si 0.986 3.014 18 H -0.258 1.258 19 H -0.274 1.274 20 H -0.255 1.255 21 C -0.124 4.124 22 C -0.144 4.144 23 C 0.061 3.939 24 O -0.403 6.403 25 C 0.061 3.939 26 C -0.146 4.146 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.035 0.965 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.410 0.590 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.284 0.716 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.105 0.895 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.914 -6.653 18.550 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.061 4.061 4 C 0.009 3.991 5 N -0.360 5.360 6 C 0.348 3.652 7 O -0.473 6.473 8 C -0.145 4.145 9 C -0.210 4.210 10 C -0.116 4.116 11 C -0.231 4.231 12 C 0.063 3.937 13 C -0.528 4.528 14 H 0.101 0.899 15 C -0.188 4.188 16 N -0.461 5.461 17 Si 0.806 3.194 18 H -0.183 1.183 19 H -0.199 1.199 20 H -0.178 1.178 21 C -0.145 4.145 22 C -0.182 4.182 23 C -0.015 4.015 24 O -0.322 6.322 25 C -0.015 4.015 26 C -0.184 4.184 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.249 0.751 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 4.444 -5.685 18.735 20.077 hybrid contribution -0.545 0.438 -1.279 1.457 sum 3.899 -5.246 17.457 18.640 Atomic orbital electron populations 1.21876 0.95629 1.02383 1.01533 1.21693 0.96325 0.94281 1.03047 1.20797 0.95431 0.96367 0.93461 1.21411 0.99826 0.94855 0.83010 1.45734 1.62489 1.23404 1.04338 1.18756 0.77080 0.84640 0.84691 1.90674 1.45016 1.23544 1.88082 1.19806 1.05069 0.97448 0.92191 1.20852 1.06498 0.94963 0.98698 1.20935 0.99295 0.99590 0.91763 1.21472 1.08200 0.95746 0.97675 1.17967 0.90907 0.91447 0.93388 1.19858 1.12479 1.25281 0.95162 0.89890 1.26850 0.94253 0.95843 1.01898 1.69876 1.11373 1.30739 1.34148 0.85149 0.79576 0.77598 0.77065 1.18289 1.19868 1.17843 1.21517 1.01588 0.99932 0.91462 1.22233 1.02185 0.99976 0.93765 1.22706 0.80170 1.00788 0.97866 1.87911 1.22372 1.77445 1.44456 1.22686 0.99815 0.95477 0.83518 1.22272 0.94270 1.02128 0.99751 0.91697 0.91337 0.94626 0.91691 0.89467 0.92378 0.93277 0.75057 0.84700 0.84177 0.87234 0.90558 0.88220 0.89236 0.91683 0.91463 0.87713 0.88090 0.91353 0.92135 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.15 71.98 0.66 -1.99 16 2 C -0.12 -1.77 4.15 30.59 0.13 -1.65 16 3 C -0.06 -1.09 0.31 -52.06 -0.02 -1.10 16 4 C 0.13 3.56 3.99 86.38 0.34 3.90 16 5 N -0.71 -21.96 4.97 -465.93 -2.31 -24.27 16 6 C 0.56 24.66 7.77 86.80 0.67 25.33 16 7 O -0.59 -31.31 16.33 -3.87 -0.06 -31.38 16 8 C -0.14 -6.70 5.87 -20.14 -0.12 -6.82 16 9 C -0.19 -7.32 9.55 22.70 0.22 -7.11 16 10 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 11 C -0.21 -9.78 9.78 22.77 0.22 -9.56 16 12 C 0.07 3.55 5.55 -21.32 -0.12 3.43 16 13 C -0.50 -27.32 9.06 23.47 0.21 -27.11 16 14 H 0.08 4.28 7.87 -2.91 -0.02 4.26 16 15 C 0.02 1.32 5.27 85.25 0.45 1.76 16 16 N -0.83 -47.34 10.79 21.82 0.24 -47.10 16 17 Si 0.99 40.22 29.57 68.60 2.03 42.25 16 18 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 20 H -0.25 -9.99 7.11 99.48 0.71 -9.29 16 21 C -0.12 -6.96 8.20 23.01 0.19 -6.77 16 22 C -0.14 -2.26 4.72 30.69 0.14 -2.11 16 23 C 0.06 0.83 6.57 72.01 0.47 1.30 16 24 O -0.40 -7.26 10.77 -148.98 -1.60 -8.86 16 25 C 0.06 0.90 6.57 72.01 0.47 1.38 16 26 C -0.15 -2.58 4.76 30.69 0.15 -2.43 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 28 H 0.07 0.99 6.14 -2.38 -0.01 0.97 16 29 H 0.03 0.80 6.93 -2.39 -0.02 0.78 16 30 H 0.06 1.02 6.56 -2.39 -0.02 1.00 16 31 H 0.09 1.02 5.01 -2.39 -0.01 1.01 16 32 H 0.06 1.67 6.88 -2.38 -0.02 1.65 16 33 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 34 H 0.41 10.37 4.29 -92.71 -0.40 9.97 16 35 H 0.14 3.86 6.38 -2.91 -0.02 3.84 16 36 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 37 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.28 14.91 8.30 -92.71 -0.77 14.14 16 39 H 0.10 6.28 5.76 -2.91 -0.02 6.26 16 40 H 0.09 1.25 6.24 -2.38 -0.01 1.23 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 42 H 0.07 0.73 6.54 -2.39 -0.02 0.72 16 43 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.07 0.80 6.67 -2.39 -0.02 0.78 16 46 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.34 7.45 -2.39 -0.02 1.33 16 Total: -1.00 -70.50 360.99 3.18 -67.32 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.59 Total: 35.16 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 4.30 Total: -33.12 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -2.08 Total: -71.37 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.67 Total: -40.24 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -70.50 3.18 -67.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266666802.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.852 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds