Wall clock time and date at job start Tue Mar 31 2020 13:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00190 * 2 1 3 5 5 C 1.53003 * 109.47304 * 173.24237 * 4 2 1 6 6 C 1.50700 * 112.84737 * 307.60857 * 5 4 2 7 7 O 1.21289 * 120.00111 * 346.73962 * 6 5 4 8 8 N 1.34776 * 119.99892 * 166.74349 * 6 5 4 9 9 C 1.39922 * 120.00044 * 184.28808 * 8 6 5 10 10 C 1.38964 * 120.03987 * 144.38944 * 9 8 6 11 11 C 1.38156 * 120.06545 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.14276 * 0.23390 * 11 10 9 13 13 C 1.38906 * 120.06621 * 359.48841 * 12 11 10 14 14 O 1.35760 * 120.03195 * 180.23673 * 13 12 11 15 15 C 1.34829 * 116.99875 * 6.76901 * 14 13 12 16 16 H 1.08003 * 120.00117 * 5.80952 * 15 14 13 17 17 C 1.38647 * 119.99903 * 185.81260 * 15 14 13 18 18 N 1.31559 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46941 * 60.00238 * 19 17 15 21 21 H 1.48502 * 109.46929 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47157 * 299.99949 * 19 17 15 23 23 C 1.38721 * 120.03291 * 324.40297 * 9 8 6 24 24 C 1.53781 * 113.69032 * 78.87370 * 5 4 2 25 25 C 1.53782 * 87.08164 * 89.12874 * 24 5 4 26 26 C 1.53782 * 113.61717 * 176.41056 * 5 4 2 27 27 H 1.08995 * 109.47474 * 64.92149 * 1 2 3 28 28 H 1.09003 * 109.46994 * 184.91930 * 1 2 3 29 29 H 1.08995 * 109.47183 * 304.91762 * 1 2 3 30 30 H 1.09002 * 109.47115 * 240.00499 * 2 1 3 31 31 H 1.08997 * 109.47525 * 191.96264 * 3 2 1 32 32 H 1.09006 * 109.47099 * 311.95856 * 3 2 1 33 33 H 1.09000 * 109.47431 * 71.96041 * 3 2 1 34 34 H 1.08995 * 109.47258 * 53.24131 * 4 2 1 35 35 H 1.09004 * 109.46967 * 293.24196 * 4 2 1 36 36 H 0.96999 * 120.00049 * 4.28099 * 8 6 5 37 37 H 1.07995 * 119.96572 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.92747 * 179.97438 * 11 10 9 39 39 H 1.07998 * 119.96445 * 179.74537 * 12 11 10 40 40 H 0.96997 * 120.00560 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.06660 * 359.96450 * 23 9 8 42 42 H 1.09000 * 113.61731 * 203.67855 * 24 5 4 43 43 H 1.09005 * 113.61290 * 334.57668 * 24 5 4 44 44 H 1.08998 * 113.61355 * 270.88293 * 25 24 5 45 45 H 1.08998 * 113.61330 * 139.97698 * 25 24 5 46 46 H 1.09002 * 113.60774 * 25.34561 * 26 5 4 47 47 H 1.08998 * 113.61340 * 156.16269 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5606 -0.8699 1.1672 6 6 4.0183 -1.4998 -0.1231 7 8 3.2148 -2.0438 -0.8508 8 7 5.3204 -1.4588 -0.4684 9 6 5.7321 -1.9636 -1.7067 10 6 6.7652 -1.3458 -2.4011 11 6 7.1717 -1.8434 -3.6241 12 6 6.5499 -2.9533 -4.1630 13 6 5.5205 -3.5788 -3.4712 14 8 4.9132 -4.6722 -3.9991 15 6 5.4463 -5.1837 -5.1270 16 1 6.3703 -4.7834 -5.5173 17 6 4.8081 -6.2235 -5.7857 18 7 3.6822 -6.7107 -5.3106 19 14 5.5464 -6.9317 -7.3487 20 1 6.9000 -7.4684 -7.0577 21 1 4.6788 -8.0258 -7.8543 22 1 5.6474 -5.8644 -8.3762 23 6 5.1092 -3.0811 -2.2428 24 6 4.3274 0.4120 1.5328 25 6 4.3043 -0.0833 2.9885 26 6 4.1858 -1.5070 2.4194 27 1 -0.3634 0.4356 -0.9307 28 1 -0.3633 -1.0239 0.0881 29 1 -0.3633 0.5882 0.8426 30 1 1.8934 -0.5138 -0.8900 31 1 3.1089 1.4500 -0.2130 32 1 1.5133 2.0141 -0.7642 33 1 1.8611 1.8912 0.9771 34 1 1.5814 -1.7080 1.3117 35 1 1.7788 -0.1424 2.1351 36 1 5.9721 -1.0793 0.1416 37 1 7.2507 -0.4758 -1.9843 38 1 7.9746 -1.3612 -4.1621 39 1 6.8673 -3.3374 -5.1212 40 1 3.2360 -7.4384 -5.7712 41 1 4.3063 -3.5632 -1.7049 42 1 5.3282 0.4596 1.1036 43 1 3.7534 1.3247 1.3729 44 1 3.4245 0.2390 3.5454 45 1 5.2357 0.0961 3.5255 46 1 3.4973 -2.1435 2.9754 47 1 5.1471 -1.9854 2.2323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268267587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:43 Heat of formation + Delta-G solvation = -22.760518 kcal Electronic energy + Delta-G solvation = -27027.513552 eV Core-core repulsion = 23369.606861 eV Total energy + Delta-G solvation = -3657.906690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.17439 -39.14004 -37.93946 -36.44723 -35.51218 -33.86815 -32.21419 -29.60719 -28.80904 -28.29573 -27.57116 -25.59487 -25.37035 -24.76759 -22.31072 -21.44936 -20.73770 -20.26046 -18.75521 -18.22264 -17.33816 -16.81243 -15.90948 -15.31863 -15.08178 -15.01407 -14.91450 -14.57125 -14.23230 -13.86129 -13.76219 -13.62017 -13.48385 -12.87359 -12.63357 -12.53430 -12.44602 -12.30728 -12.01025 -11.95532 -11.69614 -11.54443 -11.46086 -11.39414 -11.09147 -10.94899 -10.79805 -10.72421 -10.56937 -10.45749 -10.39479 -10.09003 -9.66837 -9.49905 -8.99044 -8.78039 -7.66339 -7.15396 -6.39039 -3.98505 2.04080 2.37093 2.86138 3.15846 3.17630 3.20217 3.27927 4.00988 4.26921 4.32462 4.42569 4.53006 4.60311 4.87685 4.99253 5.05454 5.08187 5.16048 5.35149 5.37331 5.41718 5.43650 5.59512 5.63537 5.65482 5.65833 5.68948 5.76686 5.84171 5.84402 5.85970 5.94658 6.01533 6.07666 6.14435 6.24960 6.27699 6.34019 6.41863 6.56974 6.76478 6.93361 7.07098 7.12112 7.36429 7.51047 7.75414 7.83816 8.05425 8.44900 9.05567 9.77425 10.78775 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.003230 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.664155 B = 8667.677161 C = 9403.549508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.150 4.150 4 C -0.073 4.073 5 C -0.097 4.097 6 C 0.520 3.480 7 O -0.504 6.504 8 N -0.669 5.669 9 C 0.176 3.824 10 C -0.236 4.236 11 C -0.059 4.059 12 C -0.245 4.245 13 C 0.166 3.834 14 O -0.174 6.174 15 C -0.392 4.392 16 H 0.091 0.909 17 C 0.039 3.961 18 N -0.860 5.860 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.186 4.186 24 C -0.142 4.142 25 C -0.137 4.137 26 C -0.127 4.127 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.402 0.598 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.270 0.730 41 H 0.133 0.867 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 15.277 15.234 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.130 4.130 3 C -0.207 4.207 4 C -0.111 4.111 5 C -0.101 4.101 6 C 0.307 3.693 7 O -0.377 6.377 8 N -0.315 5.315 9 C 0.082 3.918 10 C -0.257 4.257 11 C -0.078 4.078 12 C -0.265 4.265 13 C 0.111 3.889 14 O -0.077 6.077 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.208 4.208 24 C -0.179 4.179 25 C -0.174 4.174 26 C -0.164 4.164 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.080 0.920 41 H 0.151 0.849 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.415 14.569 14.743 20.732 hybrid contribution 0.814 -0.127 -0.601 1.020 sum 1.229 14.443 14.142 20.251 Atomic orbital electron populations 1.21783 0.95389 1.01657 1.01133 1.21350 0.95707 0.95928 1.00026 1.22074 1.01187 0.96436 1.01007 1.21229 0.90375 1.01400 0.98079 1.22140 0.97734 0.97740 0.92444 1.20464 0.81801 0.79731 0.87325 1.90736 1.52772 1.41848 1.52359 1.43420 1.08758 1.61464 1.17844 1.17197 0.96013 0.92887 0.85660 1.20268 1.03869 1.03490 0.98112 1.20497 0.97862 0.95192 0.94266 1.21176 1.02135 1.00333 1.02838 1.19166 0.90838 0.87072 0.91783 1.84014 1.49427 1.35362 1.38853 1.21282 1.07419 1.16580 1.01564 0.89131 1.25296 0.95748 0.96397 0.99076 1.70044 1.15677 1.24806 1.38983 0.85791 0.78701 0.78730 0.80243 1.19516 1.20299 1.19510 1.20157 1.05580 0.98198 0.96817 1.23359 1.00431 0.97630 0.96515 1.22837 1.02428 0.95905 0.96235 1.22987 1.01308 0.97100 0.95031 0.92874 0.92604 0.93344 0.88512 0.92349 0.93033 0.93004 0.90922 0.91275 0.76188 0.87518 0.87119 0.85520 0.91985 0.84949 0.89892 0.89132 0.89767 0.91035 0.90426 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.16 37.16 0.34 -1.23 16 2 C -0.11 -1.36 2.65 -90.62 -0.24 -1.60 16 3 C -0.15 -1.52 7.62 37.16 0.28 -1.24 16 4 C -0.07 -0.80 3.88 -26.73 -0.10 -0.90 16 5 C -0.10 -1.05 0.82 -154.85 -0.13 -1.18 16 6 C 0.52 8.02 6.35 -10.99 -0.07 7.95 16 7 O -0.50 -10.17 11.73 5.55 0.07 -10.11 16 8 N -0.67 -9.84 5.12 -9.88 -0.05 -9.89 16 9 C 0.18 3.32 6.29 -83.72 -0.53 2.80 16 10 C -0.24 -4.10 9.97 -39.34 -0.39 -4.50 16 11 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 12 C -0.24 -5.49 9.12 -39.36 -0.36 -5.85 16 13 C 0.17 4.25 6.64 -39.14 -0.26 3.99 16 14 O -0.17 -5.20 9.76 0.02 0.00 -5.20 16 15 C -0.39 -11.29 9.43 30.88 0.29 -11.00 16 16 H 0.09 2.39 5.32 -52.48 -0.28 2.11 16 17 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 18 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 19 Si 0.94 20.94 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 23 C -0.19 -4.35 8.63 -39.21 -0.34 -4.69 16 24 C -0.14 -1.15 6.06 -25.92 -0.16 -1.31 16 25 C -0.14 -0.93 7.73 -25.92 -0.20 -1.13 16 26 C -0.13 -1.12 7.22 -25.92 -0.19 -1.30 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.10 1.56 5.51 -51.93 -0.29 1.28 16 31 H 0.06 0.61 6.04 -51.93 -0.31 0.29 16 32 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 33 H 0.05 0.43 7.61 -51.93 -0.40 0.04 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.60 7.25 -51.93 -0.38 0.22 16 36 H 0.40 4.38 7.29 -40.82 -0.30 4.08 16 37 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 39 H 0.13 2.81 5.73 -52.49 -0.30 2.51 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.13 3.33 6.27 -52.49 -0.33 3.00 16 42 H 0.08 0.62 6.56 -51.93 -0.34 0.28 16 43 H 0.09 0.70 4.88 -51.93 -0.25 0.45 16 44 H 0.08 0.52 7.63 -51.93 -0.40 0.12 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 47 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 367.74 15.07 5.54 5.54 Total: -1.00 -33.55 367.74 -8.17 -41.72 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -6.92 Total: 8.95 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -2.54 Total: -21.67 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.71 Total: -35.16 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.55 -8.17 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268267587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.964 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds