Wall clock time and date at job start Tue Mar 31 2020 13:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47086 * 2 1 4 4 C 1.52997 * 109.47328 * 120.00190 * 2 1 3 5 5 C 1.53003 * 109.47304 * 173.24237 * 4 2 1 6 6 C 1.50700 * 112.84737 * 307.60857 * 5 4 2 7 7 O 1.21289 * 120.00111 * 346.73962 * 6 5 4 8 8 N 1.34776 * 119.99892 * 166.74349 * 6 5 4 9 9 C 1.39922 * 120.00044 * 184.28808 * 8 6 5 10 10 C 1.38964 * 120.03987 * 144.38944 * 9 8 6 11 11 C 1.38156 * 120.06545 * 180.02562 * 10 9 8 12 12 C 1.38169 * 120.14276 * 0.23390 * 11 10 9 13 13 C 1.38906 * 120.06621 * 359.48841 * 12 11 10 14 14 O 1.35760 * 120.03195 * 180.23673 * 13 12 11 15 15 C 1.34829 * 116.99875 * 6.76901 * 14 13 12 16 16 H 1.08003 * 120.00117 * 5.80952 * 15 14 13 17 17 C 1.38647 * 119.99903 * 185.81260 * 15 14 13 18 18 N 1.31559 * 120.00276 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46941 * 60.00238 * 19 17 15 21 21 H 1.48502 * 109.46929 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47157 * 299.99949 * 19 17 15 23 23 C 1.38721 * 120.03291 * 324.40297 * 9 8 6 24 24 C 1.53781 * 113.69032 * 78.87370 * 5 4 2 25 25 C 1.53782 * 87.08164 * 89.12874 * 24 5 4 26 26 C 1.53782 * 113.61717 * 176.41056 * 5 4 2 27 27 H 1.08995 * 109.47474 * 64.92149 * 1 2 3 28 28 H 1.09003 * 109.46994 * 184.91930 * 1 2 3 29 29 H 1.08995 * 109.47183 * 304.91762 * 1 2 3 30 30 H 1.09002 * 109.47115 * 240.00499 * 2 1 3 31 31 H 1.08997 * 109.47525 * 191.96264 * 3 2 1 32 32 H 1.09006 * 109.47099 * 311.95856 * 3 2 1 33 33 H 1.09000 * 109.47431 * 71.96041 * 3 2 1 34 34 H 1.08995 * 109.47258 * 53.24131 * 4 2 1 35 35 H 1.09004 * 109.46967 * 293.24196 * 4 2 1 36 36 H 0.96999 * 120.00049 * 4.28099 * 8 6 5 37 37 H 1.07995 * 119.96572 * 0.02562 * 10 9 8 38 38 H 1.08004 * 119.92747 * 179.97438 * 11 10 9 39 39 H 1.07998 * 119.96445 * 179.74537 * 12 11 10 40 40 H 0.96997 * 120.00560 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.06660 * 359.96450 * 23 9 8 42 42 H 1.09000 * 113.61731 * 203.67855 * 24 5 4 43 43 H 1.09005 * 113.61290 * 334.57668 * 24 5 4 44 44 H 1.08998 * 113.61355 * 270.88293 * 25 24 5 45 45 H 1.08998 * 113.61330 * 139.97698 * 25 24 5 46 46 H 1.09002 * 113.60774 * 25.34561 * 26 5 4 47 47 H 1.08998 * 113.61340 * 156.16269 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5606 -0.8699 1.1672 6 6 4.0183 -1.4998 -0.1231 7 8 3.2148 -2.0438 -0.8508 8 7 5.3204 -1.4588 -0.4684 9 6 5.7321 -1.9636 -1.7067 10 6 6.7652 -1.3458 -2.4011 11 6 7.1717 -1.8434 -3.6241 12 6 6.5499 -2.9533 -4.1630 13 6 5.5205 -3.5788 -3.4712 14 8 4.9132 -4.6722 -3.9991 15 6 5.4463 -5.1837 -5.1270 16 1 6.3703 -4.7834 -5.5173 17 6 4.8081 -6.2235 -5.7857 18 7 3.6822 -6.7107 -5.3106 19 14 5.5464 -6.9317 -7.3487 20 1 6.9000 -7.4684 -7.0577 21 1 4.6788 -8.0258 -7.8543 22 1 5.6474 -5.8644 -8.3762 23 6 5.1092 -3.0811 -2.2428 24 6 4.3274 0.4120 1.5328 25 6 4.3043 -0.0833 2.9885 26 6 4.1858 -1.5070 2.4194 27 1 -0.3634 0.4356 -0.9307 28 1 -0.3633 -1.0239 0.0881 29 1 -0.3633 0.5882 0.8426 30 1 1.8934 -0.5138 -0.8900 31 1 3.1089 1.4500 -0.2130 32 1 1.5133 2.0141 -0.7642 33 1 1.8611 1.8912 0.9771 34 1 1.5814 -1.7080 1.3117 35 1 1.7788 -0.1424 2.1351 36 1 5.9721 -1.0793 0.1416 37 1 7.2507 -0.4758 -1.9843 38 1 7.9746 -1.3612 -4.1621 39 1 6.8673 -3.3374 -5.1212 40 1 3.2360 -7.4384 -5.7712 41 1 4.3063 -3.5632 -1.7049 42 1 5.3282 0.4596 1.1036 43 1 3.7534 1.3247 1.3729 44 1 3.4245 0.2390 3.5454 45 1 5.2357 0.0961 3.5255 46 1 3.4973 -2.1435 2.9754 47 1 5.1471 -1.9854 2.2323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268267587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:42 Heat of formation + Delta-G solvation = -44.062781 kcal Electronic energy + Delta-G solvation = -27028.437287 eV Core-core repulsion = 23369.606861 eV Total energy + Delta-G solvation = -3658.830426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25896 -40.75382 -39.33692 -38.05252 -36.50898 -35.29247 -34.27049 -31.27111 -30.24048 -29.37106 -28.40397 -27.37887 -26.28021 -25.91020 -23.74659 -23.04264 -22.01973 -21.19243 -20.00045 -19.81961 -19.00698 -18.02721 -17.27899 -16.79523 -16.54435 -16.27401 -16.12202 -15.83813 -15.75105 -15.50167 -15.23782 -14.80035 -14.59710 -14.30221 -14.23433 -13.60486 -13.44101 -13.30338 -13.16267 -13.15069 -12.96185 -12.82913 -12.72698 -12.61058 -12.44699 -12.34218 -12.17358 -12.06420 -11.59261 -11.56748 -11.34724 -11.29860 -11.08107 -10.84278 -10.75930 -10.33140 -9.35488 -8.88787 -8.47910 -6.18127 0.41461 0.68633 1.32848 1.44567 1.50799 1.60744 2.01932 2.19043 2.80963 3.15232 3.40024 3.50945 3.57507 3.66837 3.89323 3.97050 4.11314 4.12823 4.19588 4.29650 4.35735 4.40722 4.63480 4.67269 4.72592 4.72898 4.76423 4.81080 4.83421 4.88340 4.97820 4.99052 5.03463 5.06058 5.10267 5.13478 5.17232 5.24306 5.32735 5.41999 5.44983 5.48815 5.51878 5.60770 5.62488 5.72848 6.01116 6.20202 6.49026 6.95308 7.23353 7.78280 8.75833 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.003230 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.664155 B = 8667.677161 C = 9403.549508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.144 4.144 4 C -0.071 4.071 5 C -0.103 4.103 6 C 0.513 3.487 7 O -0.560 6.560 8 N -0.655 5.655 9 C 0.184 3.816 10 C -0.205 4.205 11 C -0.049 4.049 12 C -0.256 4.256 13 C 0.125 3.875 14 O -0.236 6.236 15 C -0.415 4.415 16 H 0.106 0.894 17 C -0.027 4.027 18 N -0.925 5.925 19 Si 1.024 2.976 20 H -0.254 1.254 21 H -0.273 1.273 22 H -0.255 1.255 23 C -0.214 4.214 24 C -0.135 4.135 25 C -0.118 4.118 26 C -0.130 4.130 27 H 0.047 0.953 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.426 0.574 37 H 0.164 0.836 38 H 0.160 0.840 39 H 0.123 0.877 40 H 0.272 0.728 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 19.305 17.034 26.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.108 4.108 5 C -0.106 4.106 6 C 0.303 3.697 7 O -0.437 6.437 8 N -0.303 5.303 9 C 0.090 3.910 10 C -0.226 4.226 11 C -0.067 4.067 12 C -0.275 4.275 13 C 0.074 3.926 14 O -0.143 6.143 15 C -0.491 4.491 16 H 0.123 0.877 17 C -0.224 4.224 18 N -0.563 5.563 19 Si 0.842 3.158 20 H -0.178 1.178 21 H -0.197 1.197 22 H -0.179 1.179 23 C -0.235 4.235 24 C -0.172 4.172 25 C -0.155 4.155 26 C -0.168 4.168 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.121 0.879 36 H 0.266 0.734 37 H 0.181 0.819 38 H 0.178 0.822 39 H 0.141 0.859 40 H 0.081 0.919 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.111 0.889 46 H 0.094 0.906 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.544 18.673 16.615 25.245 hybrid contribution -0.098 -1.131 -0.942 1.475 sum 3.446 17.542 15.673 23.774 Atomic orbital electron populations 1.21773 0.94900 1.01153 1.02002 1.21292 0.96272 0.97205 0.98609 1.22032 1.00871 0.94602 1.02556 1.21233 0.90479 1.00443 0.98679 1.22311 0.97992 1.00079 0.90190 1.21540 0.81300 0.78602 0.88304 1.90745 1.54279 1.44164 1.54500 1.43377 1.09355 1.60755 1.16809 1.17369 0.95425 0.91131 0.87121 1.20903 1.01491 1.03441 0.96717 1.21044 0.97844 0.93209 0.94597 1.21325 1.01680 1.01738 1.02785 1.19708 0.92487 0.87389 0.92993 1.83975 1.51847 1.38135 1.40336 1.21865 1.08337 1.17306 1.01623 0.87699 1.26733 0.96111 0.96462 1.03085 1.70224 1.18170 1.26357 1.41551 0.84587 0.78213 0.78056 0.74921 1.17775 1.19724 1.17897 1.20165 1.06032 1.00463 0.96860 1.23423 1.00454 0.96029 0.97293 1.22795 1.04161 0.93042 0.95471 1.23087 1.01017 0.98880 0.93832 0.93414 0.94183 0.90645 0.93444 0.92450 0.93371 0.90142 0.93489 0.87876 0.73399 0.81872 0.82203 0.85937 0.91878 0.88494 0.88726 0.88158 0.88442 0.88941 0.90609 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.16 71.98 0.66 -2.51 16 2 C -0.12 -2.84 2.65 -10.79 -0.03 -2.86 16 3 C -0.14 -2.62 7.62 71.98 0.55 -2.07 16 4 C -0.07 -1.50 3.88 30.59 0.12 -1.38 16 5 C -0.10 -2.07 0.82 -52.40 -0.04 -2.12 16 6 C 0.51 16.10 6.35 87.66 0.56 16.65 16 7 O -0.56 -24.63 11.73 -3.06 -0.04 -24.67 16 8 N -0.66 -18.33 5.12 -303.55 -1.55 -19.88 16 9 C 0.18 6.83 6.29 38.14 0.24 7.07 16 10 C -0.21 -6.26 9.97 22.42 0.22 -6.03 16 11 C -0.05 -1.63 10.03 22.23 0.22 -1.41 16 12 C -0.26 -11.56 9.12 22.41 0.20 -11.35 16 13 C 0.13 6.85 6.64 22.56 0.15 7.00 16 14 O -0.24 -15.51 9.76 -22.84 -0.22 -15.73 16 15 C -0.42 -25.55 9.43 67.92 0.64 -24.91 16 16 H 0.11 5.81 5.32 -2.91 -0.02 5.80 16 17 C -0.03 -1.61 5.49 84.83 0.47 -1.15 16 18 N -0.92 -60.23 13.67 21.61 0.30 -59.93 16 19 Si 1.02 44.54 29.55 68.60 2.03 46.57 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.52 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 23 C -0.21 -10.67 8.63 22.51 0.19 -10.48 16 24 C -0.13 -1.61 6.06 31.12 0.19 -1.42 16 25 C -0.12 -1.03 7.73 31.12 0.24 -0.79 16 26 C -0.13 -1.99 7.22 31.12 0.22 -1.76 16 27 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.66 5.51 -2.39 -0.01 1.65 16 31 H 0.06 1.05 6.04 -2.39 -0.01 1.03 16 32 H 0.05 0.90 8.09 -2.38 -0.02 0.88 16 33 H 0.08 1.01 7.61 -2.39 -0.02 0.99 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.10 1.47 7.25 -2.39 -0.02 1.45 16 36 H 0.43 7.71 7.29 -92.71 -0.68 7.03 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 39 H 0.12 5.54 5.73 -2.91 -0.02 5.53 16 40 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 41 H 0.10 5.46 6.27 -2.91 -0.02 5.44 16 42 H 0.09 0.92 6.56 -2.39 -0.02 0.91 16 43 H 0.10 1.06 4.88 -2.38 -0.01 1.05 16 44 H 0.10 0.66 7.63 -2.39 -0.02 0.65 16 45 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 47 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 Total: -1.00 -86.19 367.74 5.63 -80.56 By element: Atomic # 1 Polarization: 32.29 SS G_CDS: 0.31 Total: 32.61 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 4.81 Total: -39.53 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -1.26 Total: -79.81 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -0.26 Total: -40.40 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -86.19 5.63 -80.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268267587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.501 kcal (2) G-P(sol) polarization free energy of solvation -86.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds