Wall clock time and date at job start Tue Mar 31 2020 12:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47116 * 2 1 4 4 C 1.50706 * 109.46841 * 119.99585 * 2 1 3 5 5 C 1.38170 * 120.02888 * 300.32032 * 4 2 1 6 6 C 1.38237 * 120.05308 * 180.29824 * 5 4 2 7 7 C 1.38285 * 120.11329 * 359.68093 * 6 5 4 8 8 C 1.38124 * 120.05752 * 0.02562 * 7 6 5 9 9 C 1.38714 * 120.02596 * 120.00098 * 4 2 1 10 10 O 1.35895 * 120.05271 * 0.02562 * 9 4 2 11 11 C 1.42904 * 116.99777 * 179.72714 * 10 9 4 12 12 C 1.52994 * 109.47375 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47181 * 179.97438 * 12 11 10 14 14 O 1.21290 * 119.99832 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99629 * 180.02562 * 13 12 11 16 16 C 1.37099 * 119.99464 * 180.02562 * 15 13 12 17 17 H 1.08008 * 119.99903 * 224.48393 * 16 15 13 18 18 C 1.38951 * 120.00437 * 44.48113 * 16 15 13 19 19 N 1.31408 * 119.99696 * 17.99972 * 18 16 15 20 20 Si 1.86792 * 120.00148 * 197.99575 * 18 16 15 21 21 H 1.48502 * 109.47258 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47192 * 120.00355 * 20 18 16 23 23 H 1.48505 * 109.47151 * 240.00278 * 20 18 16 24 24 C 1.46494 * 120.00628 * 359.97438 * 15 13 12 25 25 C 1.53000 * 117.50340 * 183.27736 * 24 15 13 26 26 C 1.53001 * 117.50276 * 114.61339 * 24 15 13 27 27 H 1.08999 * 109.47026 * 300.00571 * 1 2 3 28 28 H 1.09007 * 109.46434 * 60.00514 * 1 2 3 29 29 H 1.08997 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47026 * 239.99428 * 2 1 3 31 31 H 1.09001 * 109.47058 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46625 * 299.99400 * 3 2 1 33 33 H 1.09000 * 109.47139 * 59.99652 * 3 2 1 34 34 H 1.08000 * 119.97102 * 0.02562 * 5 4 2 35 35 H 1.08002 * 119.94399 * 179.70167 * 6 5 4 36 36 H 1.08002 * 119.97110 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.03032 * 180.02562 * 8 7 6 38 38 H 1.09006 * 109.47028 * 299.99932 * 11 10 9 39 39 H 1.09000 * 109.47076 * 59.99257 * 11 10 9 40 40 H 1.08999 * 109.47283 * 299.99764 * 12 11 10 41 41 H 1.09000 * 109.47312 * 59.99786 * 12 11 10 42 42 H 0.97002 * 120.00304 * 174.96040 * 19 18 16 43 43 H 1.09005 * 115.54848 * 328.94618 * 24 15 13 44 44 H 1.09009 * 117.49661 * 359.97438 * 25 24 15 45 45 H 1.08993 * 117.50168 * 145.01639 * 25 24 15 46 46 H 1.08990 * 117.49916 * 214.98004 * 26 24 15 47 47 H 1.09000 * 117.49313 * 359.97438 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 1.6934 -0.2426 2.4857 6 6 2.1589 -0.8902 3.6149 7 6 2.9592 -2.0111 3.4914 8 6 3.2959 -2.4863 2.2390 9 6 2.8299 -1.8382 1.1041 10 8 3.1596 -2.3037 -0.1294 11 6 3.9890 -3.4662 -0.1837 12 6 4.2508 -3.8381 -1.6445 13 6 5.1260 -5.0637 -1.7017 14 8 5.5027 -5.5883 -0.6751 15 7 5.4899 -5.5767 -2.8937 16 6 6.2856 -6.6919 -2.9457 17 1 7.1170 -6.7304 -3.6341 18 6 6.0225 -7.7727 -2.1129 19 7 4.8444 -7.8914 -1.5430 20 14 7.3434 -9.0567 -1.8037 21 1 8.5714 -8.6949 -2.5563 22 1 7.6511 -9.1106 -0.3519 23 1 6.8581 -10.3851 -2.2565 24 6 5.0343 -4.9434 -4.1337 25 6 5.4173 -5.6169 -5.4530 26 6 6.0961 -4.3101 -5.0350 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8900 34 1 1.0679 0.6323 2.5847 35 1 1.8969 -0.5202 4.5951 36 1 3.3213 -2.5155 4.3751 37 1 3.9206 -3.3620 2.1431 38 1 4.9364 -3.2602 0.3146 39 1 3.4874 -4.2941 0.3174 40 1 3.3033 -4.0442 -2.1424 41 1 4.7522 -3.0103 -2.1460 42 1 4.6356 -8.6819 -1.0210 43 1 4.0614 -4.4545 -4.0820 44 1 6.0086 -6.5310 -5.3984 45 1 4.6966 -5.5708 -6.2694 46 1 5.8217 -3.4049 -5.5766 47 1 7.1336 -4.3643 -4.7051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269707690.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:56 Heat of formation + Delta-G solvation = -41.266668 kcal Electronic energy + Delta-G solvation = -26589.785307 eV Core-core repulsion = 22931.076130 eV Total energy + Delta-G solvation = -3658.709177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.37494 -40.44800 -38.68417 -37.77114 -36.23217 -34.90021 -33.25058 -32.45478 -31.02367 -30.18358 -27.92229 -27.44855 -25.39075 -24.09064 -23.15642 -22.87127 -22.65964 -21.16186 -20.66421 -19.28775 -18.10940 -17.76221 -17.34066 -17.22571 -16.63972 -16.48351 -16.01497 -15.65829 -15.42878 -15.13060 -15.03226 -14.76542 -14.48628 -14.33713 -14.16456 -13.80802 -13.60588 -13.13888 -13.00690 -12.94710 -12.83676 -12.82085 -12.65228 -12.54892 -12.33870 -12.23181 -12.07405 -11.99617 -11.76580 -11.65977 -11.48494 -11.40353 -11.22417 -10.76645 -10.05213 -9.77692 -9.08715 -9.01278 -8.23411 -6.02254 0.37454 0.49935 1.33811 1.41583 1.49378 1.99981 2.22429 2.37786 2.81350 3.10061 3.16190 3.34294 3.71088 3.78430 3.92467 3.95037 4.07483 4.12875 4.15144 4.22040 4.28960 4.30524 4.38189 4.42699 4.50645 4.53631 4.60262 4.69079 4.80703 4.85617 4.86687 4.90241 4.95153 5.03739 5.05639 5.15085 5.23040 5.28472 5.33000 5.45182 5.45472 5.48800 5.49387 5.59429 5.65481 5.89448 6.17521 6.41002 6.99574 7.13674 7.64800 8.28569 8.85499 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015833 B = 0.003281 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.040510 B = 8531.359014 C = 9880.237348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C -0.136 4.136 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.154 4.154 7 C -0.094 4.094 8 C -0.226 4.226 9 C 0.106 3.894 10 O -0.319 6.319 11 C 0.098 3.902 12 C -0.113 4.113 13 C 0.472 3.528 14 O -0.588 6.588 15 N -0.440 5.440 16 C -0.356 4.356 17 H 0.079 0.921 18 C 0.022 3.978 19 N -0.872 5.872 20 Si 0.970 3.030 21 H -0.257 1.257 22 H -0.295 1.295 23 H -0.272 1.272 24 C 0.040 3.960 25 C -0.170 4.170 26 C -0.178 4.178 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.260 0.740 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.118 0.882 46 H 0.125 0.875 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.161 17.915 2.195 19.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.073 4.073 3 C -0.193 4.193 4 C -0.118 4.118 5 C -0.097 4.097 6 C -0.172 4.172 7 C -0.112 4.112 8 C -0.245 4.245 9 C 0.061 3.939 10 O -0.233 6.233 11 C 0.023 3.977 12 C -0.154 4.154 13 C 0.261 3.739 14 O -0.470 6.470 15 N -0.160 5.160 16 C -0.484 4.484 17 H 0.097 0.903 18 C -0.184 4.184 19 N -0.507 5.507 20 Si 0.795 3.205 21 H -0.181 1.181 22 H -0.222 1.222 23 H -0.197 1.197 24 C -0.065 4.065 25 C -0.207 4.207 26 C -0.217 4.217 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.174 0.826 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.129 0.871 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.115 0.885 41 H 0.128 0.872 42 H 0.069 0.931 43 H 0.143 0.857 44 H 0.100 0.900 45 H 0.136 0.864 46 H 0.143 0.857 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.102 17.624 2.664 19.579 hybrid contribution 0.922 -1.704 0.447 1.989 sum -7.180 15.919 3.111 17.739 Atomic orbital electron populations 1.21818 0.93196 1.01433 1.02984 1.20002 0.96653 0.96314 0.94336 1.21807 1.00470 0.94079 1.02957 1.19551 1.00155 0.94855 0.97236 1.21145 0.98485 0.99859 0.90205 1.21386 0.99530 0.96328 0.99978 1.21208 0.97127 0.96626 0.96232 1.21448 1.06179 1.03041 0.93865 1.19209 0.96299 0.94672 0.83735 1.85918 1.66283 1.44375 1.26757 1.22107 0.93071 0.85128 0.97442 1.21273 1.00976 0.97107 0.95997 1.20329 0.84078 0.85529 0.83991 1.90494 1.58612 1.63323 1.34613 1.42944 1.45758 1.24456 1.02851 1.19148 1.10151 0.93776 1.25289 0.90291 1.26066 0.97167 0.99403 0.95768 1.69937 1.21655 1.27693 1.31453 0.85260 0.79630 0.78232 0.77392 1.18086 1.22217 1.19738 1.22065 0.97964 1.02536 0.83902 1.23130 1.03958 0.96800 0.96813 1.23334 0.97643 0.97333 1.03382 0.91130 0.91132 0.94099 0.91639 0.93862 0.91158 0.91172 0.82633 0.82946 0.84383 0.87059 0.92706 0.93700 0.88550 0.87219 0.93132 0.85651 0.90017 0.86424 0.85668 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 9.00 71.98 0.65 -1.75 16 2 C -0.05 -1.18 3.06 -11.54 -0.04 -1.21 16 3 C -0.14 -2.30 9.01 71.98 0.65 -1.65 16 4 C -0.12 -2.99 4.79 -19.76 -0.09 -3.08 16 5 C -0.08 -1.60 8.71 22.25 0.19 -1.40 16 6 C -0.15 -3.10 10.04 22.28 0.22 -2.87 16 7 C -0.09 -2.34 10.04 22.25 0.22 -2.11 16 8 C -0.23 -7.13 9.04 22.37 0.20 -6.93 16 9 C 0.11 3.37 6.66 22.51 0.15 3.52 16 10 O -0.32 -11.10 8.90 -92.37 -0.82 -11.92 16 11 C 0.10 3.82 4.03 71.98 0.29 4.11 16 12 C -0.11 -4.43 4.69 29.85 0.14 -4.29 16 13 C 0.47 24.23 6.96 87.66 0.61 24.84 16 14 O -0.59 -35.56 13.76 -3.06 -0.04 -35.60 16 15 N -0.44 -22.05 2.83 -613.13 -1.74 -23.79 16 16 C -0.36 -19.66 7.91 84.04 0.66 -19.00 16 17 H 0.08 4.22 7.27 -2.91 -0.02 4.20 16 18 C 0.02 1.27 4.39 84.93 0.37 1.64 16 19 N -0.87 -53.28 11.74 21.66 0.25 -53.03 16 20 Si 0.97 45.91 29.59 68.60 2.03 47.94 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 24 C 0.04 1.53 5.87 44.99 0.26 1.80 16 25 C -0.17 -5.71 9.80 30.62 0.30 -5.41 16 26 C -0.18 -5.54 10.36 30.62 0.32 -5.22 16 27 H 0.07 0.98 7.37 -2.39 -0.02 0.97 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.68 6.99 -2.39 -0.02 1.67 16 31 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 0.95 7.41 -2.39 -0.02 0.93 16 34 H 0.16 2.10 7.10 -2.91 -0.02 2.08 16 35 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.11 3.87 6.30 -2.91 -0.02 3.85 16 38 H 0.05 2.22 7.62 -2.38 -0.02 2.20 16 39 H 0.04 1.94 7.62 -2.39 -0.02 1.92 16 40 H 0.10 3.52 7.57 -2.39 -0.02 3.50 16 41 H 0.11 3.69 8.11 -2.39 -0.02 3.68 16 42 H 0.26 15.26 8.32 -92.71 -0.77 14.49 16 43 H 0.13 4.17 6.96 -2.38 -0.02 4.16 16 44 H 0.08 3.19 6.73 -2.38 -0.02 3.17 16 45 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 46 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 47 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -73.38 380.99 5.75 -67.63 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.95 Total: 27.80 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: 5.12 Total: -19.02 kcal Atomic # 7 Polarization: -75.34 SS G_CDS: -1.48 Total: -76.82 kcal Atomic # 8 Polarization: -46.66 SS G_CDS: -0.86 Total: -47.53 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -73.38 5.75 -67.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269707690.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.361 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds