Wall clock time and date at job start Tue Mar 31 2020 12:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47131 * 2 1 4 4 C 1.52993 * 109.61681 * 304.43471 * 3 2 1 5 5 N 1.46507 * 109.47118 * 304.96805 * 4 3 2 6 6 C 1.34773 * 120.00302 * 176.61199 * 5 4 3 7 7 O 1.21586 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.47642 * 120.00016 * 180.02562 * 6 5 4 9 9 C 1.40008 * 119.89344 * 359.72272 * 8 6 5 10 10 C 1.36320 * 120.10233 * 179.71844 * 9 8 6 11 11 C 1.40892 * 119.89225 * 0.58330 * 10 9 8 12 12 C 1.41109 * 120.10180 * 179.67656 * 11 10 9 13 13 H 1.08006 * 120.00117 * 158.55833 * 12 11 10 14 14 C 1.40229 * 120.00073 * 338.55227 * 12 11 10 15 15 N 1.30647 * 119.99880 * 328.05125 * 14 12 11 16 16 Si 1.86798 * 119.99829 * 148.05234 * 14 12 11 17 17 H 1.48497 * 109.47053 * 94.96588 * 16 14 12 18 18 H 1.48498 * 109.47193 * 214.96472 * 16 14 12 19 19 H 1.48500 * 109.47343 * 334.96379 * 16 14 12 20 20 C 1.40887 * 119.79426 * 359.69051 * 11 10 9 21 21 C 1.36321 * 119.89001 * 0.02562 * 20 11 10 22 22 C 1.53200 * 109.53952 * 184.21502 * 3 2 1 23 23 C 1.53088 * 109.14958 * 183.15695 * 22 3 2 24 24 O 1.42904 * 109.42800 * 57.60630 * 23 22 3 25 25 C 1.42905 * 114.09435 * 298.83865 * 24 23 22 26 26 C 1.53091 * 109.41729 * 61.15408 * 25 24 23 27 27 H 1.08996 * 109.47354 * 179.45376 * 1 2 3 28 28 H 1.09000 * 109.47416 * 299.46214 * 1 2 3 29 29 H 1.09003 * 109.46707 * 59.45366 * 1 2 3 30 30 H 1.08996 * 109.47307 * 239.99882 * 2 1 3 31 31 H 1.09006 * 109.46628 * 119.99702 * 2 1 3 32 32 H 1.09005 * 109.47367 * 64.96134 * 4 3 2 33 33 H 1.08997 * 109.47364 * 184.97087 * 4 3 2 34 34 H 0.97001 * 119.99714 * 356.61680 * 5 4 3 35 35 H 1.08000 * 119.94870 * 0.02562 * 9 8 6 36 36 H 1.07999 * 120.05326 * 180.25229 * 10 9 8 37 37 H 0.96999 * 119.99269 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.05791 * 179.97438 * 20 11 10 39 39 H 1.08001 * 119.94526 * 179.97438 * 21 20 11 40 40 H 1.08999 * 109.53460 * 63.25226 * 22 3 2 41 41 H 1.08997 * 109.52045 * 303.05328 * 22 3 2 42 42 H 1.09001 * 109.48169 * 297.61651 * 23 22 3 43 43 H 1.09003 * 109.48314 * 177.59328 * 23 22 3 44 44 H 1.09006 * 109.47825 * 181.13816 * 25 24 23 45 45 H 1.08995 * 109.48040 * 301.15542 * 25 24 23 46 46 H 1.08999 * 109.52395 * 62.29875 * 26 25 24 47 47 H 1.08999 * 109.52428 * 182.48498 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4429 2.1984 -1.1886 5 7 1.7423 1.4756 -2.4273 6 6 1.2549 1.9211 -3.6022 7 8 0.5664 2.9227 -3.6341 8 6 1.5561 1.1923 -4.8503 9 6 2.3531 0.0418 -4.8116 10 6 2.6292 -0.6376 -5.9607 11 6 2.1213 -0.1735 -7.1902 12 6 2.4099 -0.8696 -8.3832 13 1 1.7742 -0.7465 -9.2476 14 6 3.5223 -1.7210 -8.4466 15 7 4.5929 -1.4501 -7.7485 16 14 3.4734 -3.2426 -9.5291 17 1 4.0806 -2.9314 -10.8480 18 1 4.2368 -4.3376 -8.8786 19 1 2.0637 -3.6683 -9.7212 20 6 1.3245 0.9879 -7.2248 21 6 1.0490 1.6574 -6.0697 22 6 3.5683 1.4457 -0.1061 23 6 4.0743 2.8883 -0.0260 24 8 3.6306 3.4804 1.1966 25 6 2.2094 3.5477 1.3301 26 6 1.6282 2.1316 1.3046 27 1 -0.3634 -1.0276 -0.0098 28 1 -0.3634 0.5054 0.8948 29 1 -0.3633 0.5223 -0.8851 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.3626 2.2752 -1.0648 33 1 1.8750 3.1979 -1.2378 34 1 2.2912 0.6762 -2.4018 35 1 2.7457 -0.3106 -3.8692 36 1 3.2407 -1.5273 -5.9293 37 1 5.3622 -2.0393 -7.7921 38 1 0.9333 1.3477 -8.1649 39 1 0.4387 2.5481 -6.0953 40 1 3.8685 1.0067 -1.0576 41 1 3.9915 0.8652 0.7136 42 1 3.6831 3.4581 -0.8688 43 1 5.1639 2.8937 -0.0580 44 1 1.9555 4.0279 2.2752 45 1 1.7938 4.1263 0.5052 46 1 2.0122 1.5649 2.1528 47 1 0.5410 2.1830 1.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270350914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:01 Heat of formation + Delta-G solvation = -88.418818 kcal Electronic energy + Delta-G solvation = -26971.454496 eV Core-core repulsion = 23310.700648 eV Total energy + Delta-G solvation = -3660.753848 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.56606 -38.79161 -37.16361 -36.33055 -33.95066 -33.20485 -31.38828 -30.91145 -30.26817 -29.49681 -27.01451 -25.54552 -25.04765 -23.72646 -21.92647 -21.70570 -20.97106 -19.60978 -18.73151 -17.56297 -16.93345 -16.29901 -16.12435 -15.64772 -15.40419 -15.28737 -14.73816 -14.58163 -14.17298 -14.00023 -13.69477 -13.48328 -13.28328 -13.11714 -12.70519 -12.46297 -12.24205 -12.18388 -12.05849 -11.93909 -11.79951 -11.47790 -11.34445 -11.30992 -11.14498 -11.00629 -10.74682 -10.67557 -10.44444 -10.28293 -10.17425 -9.56935 -9.52204 -9.25639 -8.96139 -8.54288 -7.75626 -7.64941 -7.20437 -4.60069 2.24225 2.84088 2.91207 2.99487 3.01688 3.68638 3.75382 3.81167 3.82916 4.43098 4.44323 4.48813 4.58773 4.85242 4.98278 5.07534 5.12998 5.27438 5.32643 5.40066 5.48110 5.52786 5.54493 5.62646 5.69024 5.74173 5.80211 5.87756 5.96882 6.00013 6.01898 6.03485 6.11594 6.18489 6.29656 6.33712 6.72182 6.77109 6.92725 7.03142 7.06975 7.09972 7.39576 7.64105 7.73467 7.83151 8.02366 8.25176 8.33716 8.57770 8.72906 9.09986 9.72715 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002957 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.825859 B = 9467.316217 C = 9760.647382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.072 4.072 4 C 0.129 3.871 5 N -0.738 5.738 6 C 0.571 3.429 7 O -0.578 6.578 8 C -0.293 4.293 9 C -0.055 4.055 10 C -0.192 4.192 11 C 0.130 3.870 12 C -0.446 4.446 13 H 0.088 0.912 14 C 0.085 3.915 15 N -0.750 5.750 16 Si 0.903 3.097 17 H -0.266 1.266 18 H -0.271 1.271 19 H -0.254 1.254 20 C -0.243 4.243 21 C -0.017 4.017 22 C -0.146 4.146 23 C 0.057 3.943 24 O -0.384 6.384 25 C 0.055 3.945 26 C -0.141 4.141 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.395 0.605 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.289 0.711 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 0.217 14.570 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.072 4.072 4 C 0.005 3.995 5 N -0.392 5.392 6 C 0.366 3.634 7 O -0.460 6.460 8 C -0.298 4.298 9 C -0.074 4.074 10 C -0.211 4.211 11 C 0.127 3.873 12 C -0.472 4.472 13 H 0.106 0.894 14 C -0.140 4.140 15 N -0.371 5.371 16 Si 0.725 3.275 17 H -0.191 1.191 18 H -0.196 1.196 19 H -0.178 1.178 20 C -0.263 4.263 21 C -0.036 4.036 22 C -0.183 4.183 23 C -0.019 4.019 24 O -0.303 6.303 25 C -0.021 4.021 26 C -0.179 4.179 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.232 0.768 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.742 0.944 14.757 14.805 hybrid contribution 0.291 -1.270 -0.655 1.458 sum -0.451 -0.326 14.102 14.113 Atomic orbital electron populations 1.21863 0.95518 1.01769 1.02196 1.21534 0.96442 0.94793 1.02055 1.20882 0.95262 0.96227 0.94833 1.21345 1.00118 0.95047 0.83006 1.45923 1.55856 1.31191 1.06264 1.18571 0.77915 0.83505 0.83386 1.90628 1.40822 1.27244 1.87344 1.18821 1.15469 1.03413 0.92088 1.20378 0.96078 0.94293 0.96661 1.20723 1.06613 1.01990 0.91760 1.17697 0.87985 0.88760 0.92855 1.19817 1.08152 1.20343 0.98915 0.89406 1.26124 0.93992 0.98581 0.95294 1.69831 1.01824 1.33530 1.31886 0.86380 0.80346 0.80536 0.80208 1.19118 1.19587 1.17790 1.20645 1.10037 0.99124 0.96458 1.20351 0.94919 0.96768 0.91569 1.22251 0.94833 0.98153 1.03102 1.22634 0.99773 0.92608 0.86921 1.87909 1.21463 1.81424 1.39471 1.22639 0.81465 0.95981 1.02043 1.22226 1.01593 0.96950 0.97099 0.92790 0.92755 0.91867 0.91624 0.91816 0.91535 0.92247 0.76839 0.89638 0.87466 0.89978 0.88465 0.88209 0.90503 0.90820 0.92553 0.88866 0.88996 0.92757 0.90695 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.20 37.16 0.34 -1.27 16 2 C -0.11 -1.11 4.69 -26.73 -0.13 -1.24 16 3 C -0.07 -0.75 0.30 -154.31 -0.05 -0.80 16 4 C 0.13 1.76 3.36 -4.04 -0.01 1.75 16 5 N -0.74 -11.91 4.92 -61.31 -0.30 -12.22 16 6 C 0.57 11.98 7.76 -12.42 -0.10 11.88 16 7 O -0.58 -13.70 16.32 5.29 0.09 -13.61 16 8 C -0.29 -6.65 5.89 -104.73 -0.62 -7.26 16 9 C -0.05 -1.20 9.47 -39.61 -0.38 -1.57 16 10 C -0.19 -4.61 8.73 -39.27 -0.34 -4.95 16 11 C 0.13 3.28 5.58 -106.80 -0.60 2.68 16 12 C -0.45 -10.94 8.95 -37.75 -0.34 -11.28 16 13 H 0.09 2.07 8.02 -52.48 -0.42 1.65 16 14 C 0.09 1.94 4.79 -17.31 -0.08 1.86 16 15 N -0.75 -17.55 11.70 55.56 0.65 -16.90 16 16 Si 0.90 16.74 29.66 -169.99 -5.04 11.70 16 17 H -0.27 -4.87 7.11 56.52 0.40 -4.46 16 18 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.25 -4.75 7.11 56.52 0.40 -4.35 16 20 C -0.24 -5.88 9.73 -39.27 -0.38 -6.26 16 21 C -0.02 -0.40 9.52 -39.61 -0.38 -0.78 16 22 C -0.15 -1.52 4.83 -26.58 -0.13 -1.65 16 23 C 0.06 0.64 6.57 37.20 0.24 0.88 16 24 O -0.38 -4.56 10.77 -35.23 -0.38 -4.94 16 25 C 0.06 0.55 6.57 37.20 0.24 0.79 16 26 C -0.14 -1.29 4.59 -26.59 -0.12 -1.41 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.49 6.66 -51.93 -0.35 0.14 16 29 H 0.06 0.79 6.45 -51.93 -0.33 0.45 16 30 H 0.07 0.71 6.80 -51.93 -0.35 0.36 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.96 6.65 -51.93 -0.35 0.62 16 33 H 0.06 0.87 5.03 -51.93 -0.26 0.61 16 34 H 0.40 5.81 4.24 -40.82 -0.17 5.63 16 35 H 0.09 1.57 6.37 -52.49 -0.33 1.24 16 36 H 0.11 2.59 6.46 -52.49 -0.34 2.25 16 37 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 40 H 0.08 0.83 7.07 -51.93 -0.37 0.46 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.70 6.49 -51.93 -0.34 0.36 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.57 6.72 -51.93 -0.35 0.22 16 46 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 0.65 6.74 -51.93 -0.35 0.30 16 LS Contribution 361.76 15.07 5.45 5.45 Total: -1.00 -28.07 361.76 -9.15 -37.22 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.80 Total: 11.91 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -2.81 Total: -18.62 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 0.35 Total: -29.11 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.29 Total: -18.56 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.04 Total: 11.70 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.07 -9.15 -37.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270350914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.194 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds