Wall clock time and date at job start Tue Mar 31 2020 12:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47131 * 2 1 4 4 C 1.52993 * 109.61681 * 304.43471 * 3 2 1 5 5 N 1.46507 * 109.47118 * 304.96805 * 4 3 2 6 6 C 1.34773 * 120.00302 * 176.61199 * 5 4 3 7 7 O 1.21586 * 119.99944 * 359.97438 * 6 5 4 8 8 C 1.47642 * 120.00016 * 180.02562 * 6 5 4 9 9 C 1.40008 * 119.89344 * 359.72272 * 8 6 5 10 10 C 1.36320 * 120.10233 * 179.71844 * 9 8 6 11 11 C 1.40892 * 119.89225 * 0.58330 * 10 9 8 12 12 C 1.41109 * 120.10180 * 179.67656 * 11 10 9 13 13 H 1.08006 * 120.00117 * 158.55833 * 12 11 10 14 14 C 1.40229 * 120.00073 * 338.55227 * 12 11 10 15 15 N 1.30647 * 119.99880 * 328.05125 * 14 12 11 16 16 Si 1.86798 * 119.99829 * 148.05234 * 14 12 11 17 17 H 1.48497 * 109.47053 * 94.96588 * 16 14 12 18 18 H 1.48498 * 109.47193 * 214.96472 * 16 14 12 19 19 H 1.48500 * 109.47343 * 334.96379 * 16 14 12 20 20 C 1.40887 * 119.79426 * 359.69051 * 11 10 9 21 21 C 1.36321 * 119.89001 * 0.02562 * 20 11 10 22 22 C 1.53200 * 109.53952 * 184.21502 * 3 2 1 23 23 C 1.53088 * 109.14958 * 183.15695 * 22 3 2 24 24 O 1.42904 * 109.42800 * 57.60630 * 23 22 3 25 25 C 1.42905 * 114.09435 * 298.83865 * 24 23 22 26 26 C 1.53091 * 109.41729 * 61.15408 * 25 24 23 27 27 H 1.08996 * 109.47354 * 179.45376 * 1 2 3 28 28 H 1.09000 * 109.47416 * 299.46214 * 1 2 3 29 29 H 1.09003 * 109.46707 * 59.45366 * 1 2 3 30 30 H 1.08996 * 109.47307 * 239.99882 * 2 1 3 31 31 H 1.09006 * 109.46628 * 119.99702 * 2 1 3 32 32 H 1.09005 * 109.47367 * 64.96134 * 4 3 2 33 33 H 1.08997 * 109.47364 * 184.97087 * 4 3 2 34 34 H 0.97001 * 119.99714 * 356.61680 * 5 4 3 35 35 H 1.08000 * 119.94870 * 0.02562 * 9 8 6 36 36 H 1.07999 * 120.05326 * 180.25229 * 10 9 8 37 37 H 0.96999 * 119.99269 * 179.97438 * 15 14 12 38 38 H 1.07999 * 120.05791 * 179.97438 * 20 11 10 39 39 H 1.08001 * 119.94526 * 179.97438 * 21 20 11 40 40 H 1.08999 * 109.53460 * 63.25226 * 22 3 2 41 41 H 1.08997 * 109.52045 * 303.05328 * 22 3 2 42 42 H 1.09001 * 109.48169 * 297.61651 * 23 22 3 43 43 H 1.09003 * 109.48314 * 177.59328 * 23 22 3 44 44 H 1.09006 * 109.47825 * 181.13816 * 25 24 23 45 45 H 1.08995 * 109.48040 * 301.15542 * 25 24 23 46 46 H 1.08999 * 109.52395 * 62.29875 * 26 25 24 47 47 H 1.08999 * 109.52428 * 182.48498 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4429 2.1984 -1.1886 5 7 1.7423 1.4756 -2.4273 6 6 1.2549 1.9211 -3.6022 7 8 0.5664 2.9227 -3.6341 8 6 1.5561 1.1923 -4.8503 9 6 2.3531 0.0418 -4.8116 10 6 2.6292 -0.6376 -5.9607 11 6 2.1213 -0.1735 -7.1902 12 6 2.4099 -0.8696 -8.3832 13 1 1.7742 -0.7465 -9.2476 14 6 3.5223 -1.7210 -8.4466 15 7 4.5929 -1.4501 -7.7485 16 14 3.4734 -3.2426 -9.5291 17 1 4.0806 -2.9314 -10.8480 18 1 4.2368 -4.3376 -8.8786 19 1 2.0637 -3.6683 -9.7212 20 6 1.3245 0.9879 -7.2248 21 6 1.0490 1.6574 -6.0697 22 6 3.5683 1.4457 -0.1061 23 6 4.0743 2.8883 -0.0260 24 8 3.6306 3.4804 1.1966 25 6 2.2094 3.5477 1.3301 26 6 1.6282 2.1316 1.3046 27 1 -0.3634 -1.0276 -0.0098 28 1 -0.3634 0.5054 0.8948 29 1 -0.3633 0.5223 -0.8851 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 0.3626 2.2752 -1.0648 33 1 1.8750 3.1979 -1.2378 34 1 2.2912 0.6762 -2.4018 35 1 2.7457 -0.3106 -3.8692 36 1 3.2407 -1.5273 -5.9293 37 1 5.3622 -2.0393 -7.7921 38 1 0.9333 1.3477 -8.1649 39 1 0.4387 2.5481 -6.0953 40 1 3.8685 1.0067 -1.0576 41 1 3.9915 0.8652 0.7136 42 1 3.6831 3.4581 -0.8688 43 1 5.1639 2.8937 -0.0580 44 1 1.9555 4.0279 2.2752 45 1 1.7938 4.1263 0.5052 46 1 2.0122 1.5649 2.1528 47 1 0.5410 2.1830 1.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270350914.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:59 Heat of formation + Delta-G solvation = -103.504604 kcal Electronic energy + Delta-G solvation = -26972.108665 eV Core-core repulsion = 23310.700648 eV Total energy + Delta-G solvation = -3661.408017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.59903 -40.32729 -38.85119 -37.41163 -35.72531 -34.59460 -32.29351 -31.98652 -31.69647 -31.33273 -28.47789 -26.89915 -26.09304 -24.58850 -23.54735 -22.79429 -22.58030 -21.23372 -19.79572 -19.37689 -18.34207 -17.31054 -17.22057 -16.98453 -16.77125 -16.41822 -15.86051 -15.71767 -15.68506 -15.36693 -15.03827 -14.96250 -14.58305 -14.35824 -14.03483 -13.97831 -13.64628 -13.33705 -13.23048 -13.11950 -12.90795 -12.89030 -12.68166 -12.65546 -12.33167 -12.27415 -11.97731 -11.86183 -11.63207 -11.37647 -11.26530 -11.13518 -11.00331 -10.69102 -10.40744 -9.99193 -9.58408 -9.48958 -8.93260 -6.45575 0.47300 1.14624 1.35047 1.41905 1.55160 2.09840 2.16790 2.41514 2.72142 2.95476 3.52861 3.60601 3.67302 3.72580 4.05800 4.09026 4.23036 4.25415 4.29611 4.32527 4.42949 4.45661 4.51117 4.57013 4.63550 4.72502 4.74483 4.81128 4.89937 4.93535 5.00760 5.05199 5.07590 5.12768 5.13564 5.18931 5.20548 5.28092 5.33714 5.46950 5.55219 5.60815 5.81832 5.91236 5.98853 6.20494 6.23849 6.49983 6.71464 6.73809 6.88682 7.46622 8.04144 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019469 B = 0.002957 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.825859 B = 9467.316217 C = 9760.647382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.064 4.064 4 C 0.130 3.870 5 N -0.718 5.718 6 C 0.571 3.429 7 O -0.610 6.610 8 C -0.304 4.304 9 C -0.045 4.045 10 C -0.210 4.210 11 C 0.104 3.896 12 C -0.476 4.476 13 H 0.087 0.913 14 C 0.051 3.949 15 N -0.776 5.776 16 Si 0.978 3.022 17 H -0.259 1.259 18 H -0.259 1.259 19 H -0.258 1.258 20 C -0.260 4.260 21 C -0.028 4.028 22 C -0.143 4.143 23 C 0.055 3.945 24 O -0.396 6.396 25 C 0.050 3.950 26 C -0.135 4.135 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.405 0.595 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.301 0.699 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.037 0.963 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.042 0.958 46 H 0.090 0.910 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -1.482 16.294 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.064 4.064 4 C 0.006 3.994 5 N -0.370 5.370 6 C 0.365 3.635 7 O -0.495 6.495 8 C -0.309 4.309 9 C -0.064 4.064 10 C -0.229 4.229 11 C 0.101 3.899 12 C -0.502 4.502 13 H 0.105 0.895 14 C -0.172 4.172 15 N -0.397 5.397 16 Si 0.797 3.203 17 H -0.183 1.183 18 H -0.183 1.183 19 H -0.181 1.181 20 C -0.279 4.279 21 C -0.048 4.048 22 C -0.181 4.181 23 C -0.021 4.021 24 O -0.315 6.315 25 C -0.027 4.027 26 C -0.173 4.173 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.243 0.757 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.056 0.944 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.060 0.940 46 H 0.108 0.892 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.004 -0.759 16.517 16.535 hybrid contribution 0.076 -0.654 -1.128 1.306 sum 0.072 -1.413 15.389 15.454 Atomic orbital electron populations 1.21846 0.95751 1.01935 1.01679 1.21543 0.96158 0.94216 1.02716 1.20845 0.95240 0.96367 0.93957 1.21488 0.99977 0.94941 0.82979 1.45737 1.54405 1.31056 1.05834 1.18391 0.77918 0.83015 0.84211 1.90607 1.42397 1.28565 1.87917 1.19102 1.15291 1.03823 0.92653 1.20619 0.94902 0.93331 0.97550 1.20773 1.07494 1.02471 0.92191 1.18033 0.88734 0.89287 0.93879 1.20081 1.09224 1.21931 0.98929 0.89540 1.26919 0.92903 1.00792 0.96612 1.69818 1.02518 1.34732 1.32677 0.85254 0.80128 0.76460 0.78430 1.18304 1.18280 1.18133 1.20774 1.10730 0.99453 0.96942 1.20487 0.95238 0.96882 0.92154 1.22242 0.94573 0.97720 1.03516 1.22655 1.00412 0.92826 0.86224 1.87895 1.22561 1.81624 1.39463 1.22796 0.80594 0.96630 1.02649 1.22208 1.02245 0.96329 0.96471 0.92281 0.91215 0.94471 0.92421 0.89685 0.92173 0.93217 0.75748 0.86169 0.87812 0.88705 0.88072 0.88273 0.90939 0.89208 0.94431 0.87866 0.87016 0.93954 0.89167 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.20 71.98 0.66 -2.21 16 2 C -0.11 -1.89 4.69 30.60 0.14 -1.74 16 3 C -0.06 -1.20 0.30 -52.06 -0.02 -1.22 16 4 C 0.13 3.44 3.36 86.38 0.29 3.73 16 5 N -0.72 -22.68 4.92 -466.16 -2.29 -24.97 16 6 C 0.57 24.06 7.76 86.73 0.67 24.74 16 7 O -0.61 -29.42 16.32 -3.99 -0.07 -29.48 16 8 C -0.30 -13.92 5.89 -19.93 -0.12 -14.04 16 9 C -0.05 -1.95 9.47 22.25 0.21 -1.74 16 10 C -0.21 -10.20 8.73 22.47 0.20 -10.01 16 11 C 0.10 5.36 5.58 -21.28 -0.12 5.24 16 12 C -0.48 -23.79 8.95 23.46 0.21 -23.58 16 13 H 0.09 4.18 8.02 -2.91 -0.02 4.16 16 14 C 0.05 2.31 4.79 85.35 0.41 2.71 16 15 N -0.78 -36.10 11.70 21.87 0.26 -35.84 16 16 Si 0.98 33.63 29.66 68.60 2.03 35.66 16 17 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 18 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 C -0.26 -12.99 9.73 22.47 0.22 -12.78 16 21 C -0.03 -1.38 9.52 22.25 0.21 -1.17 16 22 C -0.14 -2.66 4.83 30.69 0.15 -2.51 16 23 C 0.06 1.17 6.57 72.01 0.47 1.64 16 24 O -0.40 -8.76 10.77 -148.98 -1.60 -10.36 16 25 C 0.05 0.89 6.57 72.01 0.47 1.36 16 26 C -0.13 -2.09 4.59 30.68 0.14 -1.95 16 27 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.06 6.66 -2.39 -0.02 1.05 16 29 H 0.04 0.88 6.45 -2.39 -0.02 0.86 16 30 H 0.06 1.10 6.80 -2.39 -0.02 1.08 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.06 1.71 6.65 -2.38 -0.02 1.70 16 33 H 0.05 1.46 5.03 -2.39 -0.01 1.44 16 34 H 0.40 11.28 4.24 -92.71 -0.39 10.89 16 35 H 0.12 4.22 6.37 -2.91 -0.02 4.20 16 36 H 0.10 5.03 6.46 -2.91 -0.02 5.01 16 37 H 0.30 12.27 8.29 -92.71 -0.77 11.50 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.10 4.73 7.63 -2.91 -0.02 4.71 16 40 H 0.07 1.41 7.07 -2.39 -0.02 1.40 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 0.92 6.49 -2.39 -0.02 0.91 16 43 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.04 0.86 6.72 -2.39 -0.02 0.84 16 46 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.09 1.22 6.74 -2.39 -0.02 1.20 16 Total: -1.00 -61.41 361.76 3.13 -58.27 By element: Atomic # 1 Polarization: 39.63 SS G_CDS: 0.60 Total: 40.23 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.21 Total: -33.51 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -2.04 Total: -60.81 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -1.67 Total: -39.84 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.66 kcal Total: -61.41 3.13 -58.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270350914.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.234 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds